diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2018-07-16 18:11:44 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2018-07-16 18:11:44 +0000 |
| commit | 19d0c4c3a41fd61997167ed2b775b5ff41e7207b (patch) | |
| tree | 5d4935b9e8af5044d4d0256e45171a5043e25fd6 /biology | |
| parent | Remove expired ports: (diff) | |
biology/htslib: Update 1.6 -> 1.8
Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW
PR: 228908
Approved by: maintainer's timeout (cartwright@asu.edu; 35 days)
Notes
Notes:
svn path=/head/; revision=474752
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/htslib/Makefile | 9 | ||||
| -rw-r--r-- | biology/htslib/distinfo | 6 | ||||
| -rw-r--r-- | biology/htslib/pkg-descr | 2 | ||||
| -rw-r--r-- | biology/htslib/pkg-plist | 1 |
4 files changed, 8 insertions, 10 deletions
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile index 4293a9a07b86..ac3b62b3bf46 100644 --- a/biology/htslib/Makefile +++ b/biology/htslib/Makefile @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= htslib -PORTVERSION= 1.6 +DISTVERSION= 1.8 CATEGORIES= biology devel MAINTAINER= cartwright@asu.edu @@ -14,10 +14,9 @@ LICENSE_FILE= ${WRKSRC}/LICENSE TEST_DEPENDS= bash:shells/bash +USES= autoreconf gmake localbase pathfix perl5 shebangfix USE_GITHUB= yes GH_ACCOUNT= samtools - -USES= autoreconf gmake pathfix perl5 shebangfix USE_PERL5= test USE_LDCONFIG= yes GNU_CONFIGURE= yes @@ -28,12 +27,10 @@ OPTIONS_DEFINE= CURL OPTIONS_DEFAULT= CURL CURL_DESC= Use libcurl for network file access (HTTPS and S3 support). +CURL_USES= ssl CURL_LIB_DEPENDS= libcurl.so:ftp/curl CURL_CONFIGURE_ENABLE= libcurl -CPPFLAGS+= -I${LOCALBASE}/include -LDFLAGS+= -L${LOCALBASE}/lib - PLIST_SUB= PORTVERSION="${PORTVERSION}" TEST_TARGET= test diff --git a/biology/htslib/distinfo b/biology/htslib/distinfo index 437e0b06550a..0882f1ef9080 100644 --- a/biology/htslib/distinfo +++ b/biology/htslib/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1508301522 -SHA256 (samtools-htslib-1.6_GH0.tar.gz) = 4215c9153c27603cbaaf542f2ec128c5e839380d6df6edd4dbf67955170740c6 -SIZE (samtools-htslib-1.6_GH0.tar.gz) = 1155672 +TIMESTAMP = 1528766078 +SHA256 (samtools-htslib-1.8_GH0.tar.gz) = ad52105c0f9ce6474c8f5d2f208b8e71982436ee1ca5225162932b08aff48b23 +SIZE (samtools-htslib-1.8_GH0.tar.gz) = 1262465 diff --git a/biology/htslib/pkg-descr b/biology/htslib/pkg-descr index 4abab85879ac..f5684283ff81 100644 --- a/biology/htslib/pkg-descr +++ b/biology/htslib/pkg-descr @@ -2,4 +2,4 @@ HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. -WWW: http://www.htslib.org/ +WWW: https://www.htslib.org/ diff --git a/biology/htslib/pkg-plist b/biology/htslib/pkg-plist index ea4eb9a990f4..2143ba6be014 100644 --- a/biology/htslib/pkg-plist +++ b/biology/htslib/pkg-plist @@ -32,6 +32,7 @@ lib/libhts.so lib/libhts.so.%%PORTVERSION%% lib/libhts.so.2 libdata/pkgconfig/htslib.pc +man/man1/bgzip.1.gz man/man1/htsfile.1.gz man/man1/tabix.1.gz man/man5/faidx.5.gz |