diff options
| author | Joseph Mingrone <jrm@FreeBSD.org> | 2016-12-20 17:01:27 +0000 |
|---|---|---|
| committer | Joseph Mingrone <jrm@FreeBSD.org> | 2016-12-20 17:01:27 +0000 |
| commit | 14eec0f1a6f74f8477d563b1fa780e412fe5d0e4 (patch) | |
| tree | a5302d5e256d8a4fb84d8cd92dfd5bd4071e58fe /biology | |
| parent | biology/cd-hit: Update to bug-fix release 4.6.6 (diff) | |
biology/bowtie2: Update to version 2.2.9
- Update license information.
- Add python to USES (bowtie2-build bowtie2-inspect need python)
- Add DOCS and EXAMPLES options
Approved by: AMDmi3 (mentor) swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8182
Notes
Notes:
svn path=/head/; revision=429003
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/bowtie2/Makefile | 27 | ||||
| -rw-r--r-- | biology/bowtie2/distinfo | 5 |
2 files changed, 18 insertions, 14 deletions
diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index 459bc46bd71c..a09862b29506 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -1,25 +1,28 @@ # Created by: Jason Bacon # $FreeBSD$ -PORTNAME= bowtie2 -PORTVERSION= 2.2.8 +PORTNAME= bowtie2 +PORTVERSION= 2.2.9 DISTVERSIONPREFIX= v -CATEGORIES= biology +CATEGORIES= biology MAINTAINER= bacon4000@gmail.com COMMENT= Ultrafast, memory-efficient short read aligner -LICENSE= GPLv3 +LICENSE= GPLv3+ +LICENSE_FILE= ${WRKSRC}/LICENSE # May also work on other 64-bit platforms, but untested ONLY_FOR_ARCHS= amd64 -USES= gmake perl5 shebangfix +USES= gmake perl5 python shebangfix USE_PERL5= run -SHEBANG_FILES= scripts/*.pl +SHEBANG_FILES= bowtie2-build bowtie2-inspect scripts/*.pl USE_GITHUB= yes GH_ACCOUNT= BenLangmead +OPTIONS_DEFINE= DOCS EXAMPLES + post-install: ${MKDIR} ${STAGEDIR}${DATADIR}/scripts ${INSTALL_PROGRAM} \ @@ -30,11 +33,11 @@ post-install: ${WRKSRC}/scripts/*.sh \ ${WRKSRC}/scripts/*.pl \ ${STAGEDIR}${DATADIR}/scripts - cd ${WRKSRC}/example && ${COPYTREE_SHARE} \ - 'index reads reference' \ - ${STAGEDIR}${EXAMPLESDIR} - cd ${WRKSRC}/doc && ${COPYTREE_SHARE} \ - \* \ - ${STAGEDIR}${DOCSDIR} + +post-install-DOCS-on: + (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) + +post-install-EXAMPLES-on: + (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) .include <bsd.port.mk> diff --git a/biology/bowtie2/distinfo b/biology/bowtie2/distinfo index 2b548acf00f2..32a39c53fefa 100644 --- a/biology/bowtie2/distinfo +++ b/biology/bowtie2/distinfo @@ -1,2 +1,3 @@ -SHA256 (BenLangmead-bowtie2-v2.2.8_GH0.tar.gz) = e4795f5779dfdefffcc9c341239c1fb6f7d78e15528c6094d9c580a5c0e87ac1 -SIZE (BenLangmead-bowtie2-v2.2.8_GH0.tar.gz) = 5814699 +TIMESTAMP = 1475861880 +SHA256 (BenLangmead-bowtie2-v2.2.9_GH0.tar.gz) = af940f77fc36aabea90d3d865724fd7ec7e250788d2d2f793c45c713d16ae5ee +SIZE (BenLangmead-bowtie2-v2.2.9_GH0.tar.gz) = 5815106 |