diff options
| author | Mark Linimon <linimon@FreeBSD.org> | 2018-06-21 23:52:37 +0000 |
|---|---|---|
| committer | Mark Linimon <linimon@FreeBSD.org> | 2018-06-21 23:52:37 +0000 |
| commit | 0e9d79c998164f81d1bcc1061bce68afdd0b5756 (patch) | |
| tree | 43e3e96b51c1b5ffe0081b680c450409ce4bb954 /biology | |
| parent | - Fix build with clang 6.0 (diff) | |
Mark as broken on aarch64, and, where appropriate, armvX.
While here, pet portlint.
Approved by: portmgr (tier-2 blanket)
Notes
Notes:
svn path=/head/; revision=473009
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/canu/Makefile | 4 | ||||
| -rw-r--r-- | biology/freebayes/Makefile | 4 | ||||
| -rw-r--r-- | biology/pear-merger/Makefile | 4 | ||||
| -rw-r--r-- | biology/trimadap/Makefile | 4 |
4 files changed, 16 insertions, 0 deletions
diff --git a/biology/canu/Makefile b/biology/canu/Makefile index 19ab1b85b2fb..c6c0f25ea3d7 100644 --- a/biology/canu/Makefile +++ b/biology/canu/Makefile @@ -11,6 +11,10 @@ COMMENT= Single molecule sequence assembler LICENSE= GPLv2 LICENSE_FILE= ${WRKDIR}/${PORTNAME}-${PORTVERSION}/README.license.GPL +BROKEN_aarch64= fails to link: undefined reference to omp_set_num_threads +BROKEN_armv6= fails to install: mv: rename site_perl to /wrkdirs/usr/ports/biology/canu/work/canu-1.7/src/usr/local/FreeBSD-armv6/lib/perl5/site_perl: No such file or directory +BROKEN_armv7= fails to install: mv: rename site_perl to /wrkdirs/usr/ports/biology/canu/work/canu-1.7/src/usr/local/FreeBSD-armv7/lib/perl5/site_perl: No such file or directory + LIB_DEPENDS= libboost_regex.so:devel/boost-libs RUN_DEPENDS= gnuplot:math/gnuplot diff --git a/biology/freebayes/Makefile b/biology/freebayes/Makefile index 3d1fa422be62..9efc560da37e 100644 --- a/biology/freebayes/Makefile +++ b/biology/freebayes/Makefile @@ -10,6 +10,10 @@ COMMENT= Bayesian haplotype-based polymorphism discovery and genotyping LICENSE= MIT +BROKEN_aarch64= fails to compile: invalid conversion between vector type and integer type +BROKEN_armv6= fails to compile: invalid conversion between vector type and integer type +BROKEN_armv7= fails to compile: invalid conversion between vector type and integer type + # Submodules use older versions than the ports, so we cannot safely unbundle # No shared libs are built by the submodules so there will be no conflicts USES= gmake tar:xz diff --git a/biology/pear-merger/Makefile b/biology/pear-merger/Makefile index dee206c9dd84..d9a9a3985bcc 100644 --- a/biology/pear-merger/Makefile +++ b/biology/pear-merger/Makefile @@ -14,6 +14,10 @@ COMMENT= Memory-efficient and highly accurate paired-end read merger LICENSE= CC-BY-NC-SA-3.0 +BROKEN_aarch64= fails to compile: invokes x86 assembler +BROKEN_armv6= fails to compile: invokes x86 assembler +BROKEN_armv7= fails to compile: invokes x86 assembler + GNU_CONFIGURE= yes WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}-src diff --git a/biology/trimadap/Makefile b/biology/trimadap/Makefile index 21e8a9b4e149..565e42f7c40e 100644 --- a/biology/trimadap/Makefile +++ b/biology/trimadap/Makefile @@ -10,6 +10,10 @@ COMMENT= Trim adapter sequences from Illumina data using heuristic rules LICENSE= GPLv2 +BROKEN_aarch64= fails to compile: invalid conversion between vector type and integer type +BROKEN_armv6= fails to compile: invalid conversion between vector type and integer type +BROKEN_armv7= fails to compile: invalid conversion between vector type and integer type + USE_GITHUB= yes GH_ACCOUNT= lh3 |