diff options
| author | Johann Visagie <wjv@FreeBSD.org> | 2001-08-29 12:00:08 +0000 |
|---|---|---|
| committer | Johann Visagie <wjv@FreeBSD.org> | 2001-08-29 12:00:08 +0000 |
| commit | 22c3e2138e264ad37fb997e8d0c73d518b02ae1b (patch) | |
| tree | b4b10d36581c3ef2e2332bf558433535a6099966 /biology | |
| parent | add glass (diff) | |
- Update to version 3.1
PR: 30176
Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
Notes
Notes:
svn path=/head/; revision=47087
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/paml/Makefile | 8 | ||||
| -rw-r--r-- | biology/paml/distinfo | 2 | ||||
| -rw-r--r-- | biology/paml/files/patch-src::Makefile | 12 | ||||
| -rw-r--r-- | biology/paml/pkg-plist | 2 |
4 files changed, 18 insertions, 6 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile index 045e78934fc8..93d99e80f866 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -6,10 +6,10 @@ # PORTNAME= paml -PORTVERSION= 3.04 +PORTVERSION= 3.1 CATEGORIES= biology MASTER_SITES= ftp://abacus.gene.ucl.ac.uk/pub/paml/ -DISTNAME= paml3.0d +DISTNAME= paml3.1 EXTRACT_SUFX= .tar.Z MAINTAINER= dbader@eece.unm.edu @@ -24,9 +24,9 @@ do-install: ${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin .endfor .if !defined(NOPORTDOCS) - ${MKDIR} ${PREFIX}/share/doc/${PORTNAME} + ${MKDIR} ${DOCSDIR} ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/pamlDOC.pdf \ - ${PREFIX}/share/doc/${PORTNAME} + ${DOCSDIR} .endif .include <bsd.port.mk> diff --git a/biology/paml/distinfo b/biology/paml/distinfo index f94439974a93..1edfbcf51c88 100644 --- a/biology/paml/distinfo +++ b/biology/paml/distinfo @@ -1 +1 @@ -MD5 (paml3.0d.tar.Z) = a4c7b9d6dc2137ff080b5da816412936 +MD5 (paml3.1.tar.Z) = dbf2b5a61a373518e5d27b837aec9df7 diff --git a/biology/paml/files/patch-src::Makefile b/biology/paml/files/patch-src::Makefile new file mode 100644 index 000000000000..9c24749fda4b --- /dev/null +++ b/biology/paml/files/patch-src::Makefile @@ -0,0 +1,12 @@ +--- Makefile.orig Thu Jul 19 12:01:33 2001 ++++ Makefile Tue Aug 28 19:07:55 2001 +@@ -1,7 +1,7 @@ + PRGS = baseml codeml codemlsites basemlg pamp evolver mcmctree yn00 chi2 +-CC = cc # cc, gcc, cl ++CC = gcc # cc, gcc, cl + +-CFLAGS = -fast -w ++CFLAGS = -O2 + + #CFLAGS = -w0 -warnprotos -newc -std -fast + #CFLAGS = -g -w0 -warnprotos -newc -std -edit1 # diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist index d4ee4fc816f4..17ee1e6cd87c 100644 --- a/biology/paml/pkg-plist +++ b/biology/paml/pkg-plist @@ -1,6 +1,6 @@ bin/baseml bin/basemlg -bin/chi2 +bin/chi2 bin/codeml bin/codemlsites bin/evolver |