From 22c3e2138e264ad37fb997e8d0c73d518b02ae1b Mon Sep 17 00:00:00 2001
From: Johann Visagie <wjv@FreeBSD.org>
Date: Wed, 29 Aug 2001 12:00:08 +0000
Subject: - Update to version 3.1

PR:		30176
Submitted by:	David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
---
 biology/paml/Makefile                  |  8 ++++----
 biology/paml/distinfo                  |  2 +-
 biology/paml/files/patch-src::Makefile | 12 ++++++++++++
 biology/paml/pkg-plist                 |  2 +-
 4 files changed, 18 insertions(+), 6 deletions(-)
 create mode 100644 biology/paml/files/patch-src::Makefile

(limited to 'biology')

diff --git a/biology/paml/Makefile b/biology/paml/Makefile
index 045e78934fc8..93d99e80f866 100644
--- a/biology/paml/Makefile
+++ b/biology/paml/Makefile
@@ -6,10 +6,10 @@
 #
 
 PORTNAME=	paml
-PORTVERSION=	3.04
+PORTVERSION=	3.1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://abacus.gene.ucl.ac.uk/pub/paml/
-DISTNAME=	paml3.0d
+DISTNAME=	paml3.1
 EXTRACT_SUFX=	.tar.Z
 
 MAINTAINER=	dbader@eece.unm.edu
@@ -24,9 +24,9 @@ do-install:
 		${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
 .endfor
 .if !defined(NOPORTDOCS)
-		${MKDIR} ${PREFIX}/share/doc/${PORTNAME}
+		${MKDIR} ${DOCSDIR}
 		${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/pamlDOC.pdf \
-			${PREFIX}/share/doc/${PORTNAME}
+			${DOCSDIR}
 .endif
 
 .include <bsd.port.mk>
diff --git a/biology/paml/distinfo b/biology/paml/distinfo
index f94439974a93..1edfbcf51c88 100644
--- a/biology/paml/distinfo
+++ b/biology/paml/distinfo
@@ -1 +1 @@
-MD5 (paml3.0d.tar.Z) = a4c7b9d6dc2137ff080b5da816412936
+MD5 (paml3.1.tar.Z) = dbf2b5a61a373518e5d27b837aec9df7
diff --git a/biology/paml/files/patch-src::Makefile b/biology/paml/files/patch-src::Makefile
new file mode 100644
index 000000000000..9c24749fda4b
--- /dev/null
+++ b/biology/paml/files/patch-src::Makefile
@@ -0,0 +1,12 @@
+--- Makefile.orig	Thu Jul 19 12:01:33 2001
++++ Makefile	Tue Aug 28 19:07:55 2001
+@@ -1,7 +1,7 @@
+ PRGS =  baseml codeml codemlsites basemlg pamp evolver mcmctree yn00 chi2 
+-CC = cc # cc, gcc, cl
++CC = gcc # cc, gcc, cl
+ 
+-CFLAGS = -fast -w
++CFLAGS = -O2
+ 
+ #CFLAGS = -w0 -warnprotos -newc -std -fast
+ #CFLAGS = -g -w0 -warnprotos -newc -std -edit1 #
diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist
index d4ee4fc816f4..17ee1e6cd87c 100644
--- a/biology/paml/pkg-plist
+++ b/biology/paml/pkg-plist
@@ -1,6 +1,6 @@
 bin/baseml
 bin/basemlg
-bin/chi2 
+bin/chi2
 bin/codeml
 bin/codemlsites
 bin/evolver
-- 
cgit v1.2.3