diff options
author | Baptiste Daroussin <bapt@FreeBSD.org> | 2015-04-05 17:55:35 +0000 |
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committer | Baptiste Daroussin <bapt@FreeBSD.org> | 2015-04-05 17:55:35 +0000 |
commit | f4e1a5b6b20f59d5f0c9c918282358302dea37c0 (patch) | |
tree | d4d5a85e271018904c86d05b01fd16a84e137d1b /biology | |
parent | Mark as broken unfetchable ports (diff) |
Mark as broken unfetchable ports
Notes
Notes:
svn path=/head/; revision=383309
Diffstat (limited to 'biology')
-rw-r--r-- | biology/consed/Makefile | 2 | ||||
-rw-r--r-- | biology/migrate/Makefile | 2 | ||||
-rw-r--r-- | biology/ncbi-blast+/Makefile | 2 | ||||
-rw-r--r-- | biology/njplot/Makefile | 2 | ||||
-rw-r--r-- | biology/ortep3/Makefile | 2 | ||||
-rw-r--r-- | biology/p5-Bio-ASN1-EntrezGene/Makefile | 2 | ||||
-rw-r--r-- | biology/paml/Makefile | 2 | ||||
-rw-r--r-- | biology/platon/Makefile | 1 | ||||
-rw-r--r-- | biology/povchem/Makefile | 1 | ||||
-rw-r--r-- | biology/seaview/Makefile | 2 |
10 files changed, 18 insertions, 0 deletions
diff --git a/biology/consed/Makefile b/biology/consed/Makefile index 971c930d5e15..09ae7a0d5c67 100644 --- a/biology/consed/Makefile +++ b/biology/consed/Makefile @@ -11,6 +11,8 @@ DISTNAME= ${PORTNAME}_linux MAINTAINER= mzaki@m.u-tokyo.ac.jp COMMENT= Graphical tool for editing Phrap assemblies +BROKEN= Unfetchable + RUN_DEPENDS= phred:${PORTSDIR}/biology/phred \ phrap:${PORTSDIR}/biology/phrap diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile index 92edf8febc47..9c297277c24f 100644 --- a/biology/migrate/Makefile +++ b/biology/migrate/Makefile @@ -10,6 +10,8 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}.src MAINTAINER= ports@FreeBSD.org COMMENT= Program to estimate population sizes and migration rates +BROKEN= unfetchable + GNU_CONFIGURE= yes CONFIGURE_ENV= ac_cv_prog_GMAKE="${MAKE}" MAKE_ARGS= PRETTYCFLAGS="${CFLAGS} -DNOJPEG -DNOZLIB -DNOPNG -Iharu \ diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile index ab900445cd16..2130fb7a4011 100644 --- a/biology/ncbi-blast+/Makefile +++ b/biology/ncbi-blast+/Makefile @@ -12,6 +12,8 @@ DISTNAME= ncbi-blast-${PORTVERSION}+-src MAINTAINER= jwbacon@tds.net COMMENT= NCBI implementation of Basic Local Alignment Search Tool +BROKEN= Unfetchable + LICENSE= Public_domain LICENSE_NAME= Public Domain LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE diff --git a/biology/njplot/Makefile b/biology/njplot/Makefile index f7b679c2b792..9f14186d45a2 100644 --- a/biology/njplot/Makefile +++ b/biology/njplot/Makefile @@ -10,6 +10,8 @@ MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/ MAINTAINER= mzaki@m.u-tokyo.ac.jp COMMENT= Phylogenetic tree drawing program capable of interactive manipulation +BROKEN= Unfetchable + OPTIONS_DEFINE= DOCS X11 OPTIONS_DEFAULT= DOCS X11 diff --git a/biology/ortep3/Makefile b/biology/ortep3/Makefile index ce688ec8557d..32205a5491a3 100644 --- a/biology/ortep3/Makefile +++ b/biology/ortep3/Makefile @@ -13,6 +13,8 @@ EXTRACT_ONLY= ortep.tar.Z MAINTAINER= ports@FreeBSD.org COMMENT= Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure +BROKEN= Unfetchable + PGPLOT_LIB_DEPENDS= libpgplot.so:${PORTSDIR}/graphics/pgplot USES= fortran diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile index 3128b0bf287b..ef687b66a297 100644 --- a/biology/p5-Bio-ASN1-EntrezGene/Makefile +++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile @@ -11,6 +11,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= mauricio@arareko.net COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene +BROKEN= Unfetchable + WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-1.09 USES= perl5 tar:tgz diff --git a/biology/paml/Makefile b/biology/paml/Makefile index c28a6a9be64a..cde5e4507ef9 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -10,6 +10,8 @@ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= jrm@ftfl.ca COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) +BROKEN= Unfetchable + USES= gmake tar:tgz WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION}/src MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" diff --git a/biology/platon/Makefile b/biology/platon/Makefile index f5b8e3b967f3..1e0c92396658 100644 --- a/biology/platon/Makefile +++ b/biology/platon/Makefile @@ -16,6 +16,7 @@ COMMENT= Tool for viewing molecular/crystallographic structures # There is a charge of US$ 5000 for commercial users. NO_CDROM= free for academic, US$ 5000 for commercial users +BROKEN= Unfetchable USES= fortran USE_XORG= x11 diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile index 64823160e0eb..516e93db62bb 100644 --- a/biology/povchem/Makefile +++ b/biology/povchem/Makefile @@ -17,6 +17,7 @@ COMMENT= Simple yet powerful tool to generate POV from a PDB file RUN_DEPENDS= povray:${PORTSDIR}/graphics/povray-meta +BROKEN= Unfetchable NO_WRKSUBDIR= yes USES= dos2unix diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile index c1ecbca02d81..1e63d0ed40bc 100644 --- a/biology/seaview/Makefile +++ b/biology/seaview/Makefile @@ -14,6 +14,8 @@ COMMENT= Multiple DNA/protein sequence alignment editor LICENSE= GPLv3 +BROKEN= Unfetchable + LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk \ libpng.so:${PORTSDIR}/graphics/png |