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authorBaptiste Daroussin <bapt@FreeBSD.org>2015-04-05 17:55:35 +0000
committerBaptiste Daroussin <bapt@FreeBSD.org>2015-04-05 17:55:35 +0000
commitf4e1a5b6b20f59d5f0c9c918282358302dea37c0 (patch)
treed4d5a85e271018904c86d05b01fd16a84e137d1b /biology
parentMark as broken unfetchable ports (diff)
Mark as broken unfetchable ports
Notes
Notes: svn path=/head/; revision=383309
Diffstat (limited to 'biology')
-rw-r--r--biology/consed/Makefile2
-rw-r--r--biology/migrate/Makefile2
-rw-r--r--biology/ncbi-blast+/Makefile2
-rw-r--r--biology/njplot/Makefile2
-rw-r--r--biology/ortep3/Makefile2
-rw-r--r--biology/p5-Bio-ASN1-EntrezGene/Makefile2
-rw-r--r--biology/paml/Makefile2
-rw-r--r--biology/platon/Makefile1
-rw-r--r--biology/povchem/Makefile1
-rw-r--r--biology/seaview/Makefile2
10 files changed, 18 insertions, 0 deletions
diff --git a/biology/consed/Makefile b/biology/consed/Makefile
index 971c930d5e15..09ae7a0d5c67 100644
--- a/biology/consed/Makefile
+++ b/biology/consed/Makefile
@@ -11,6 +11,8 @@ DISTNAME= ${PORTNAME}_linux
MAINTAINER= mzaki@m.u-tokyo.ac.jp
COMMENT= Graphical tool for editing Phrap assemblies
+BROKEN= Unfetchable
+
RUN_DEPENDS= phred:${PORTSDIR}/biology/phred \
phrap:${PORTSDIR}/biology/phrap
diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile
index 92edf8febc47..9c297277c24f 100644
--- a/biology/migrate/Makefile
+++ b/biology/migrate/Makefile
@@ -10,6 +10,8 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}.src
MAINTAINER= ports@FreeBSD.org
COMMENT= Program to estimate population sizes and migration rates
+BROKEN= unfetchable
+
GNU_CONFIGURE= yes
CONFIGURE_ENV= ac_cv_prog_GMAKE="${MAKE}"
MAKE_ARGS= PRETTYCFLAGS="${CFLAGS} -DNOJPEG -DNOZLIB -DNOPNG -Iharu \
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index ab900445cd16..2130fb7a4011 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -12,6 +12,8 @@ DISTNAME= ncbi-blast-${PORTVERSION}+-src
MAINTAINER= jwbacon@tds.net
COMMENT= NCBI implementation of Basic Local Alignment Search Tool
+BROKEN= Unfetchable
+
LICENSE= Public_domain
LICENSE_NAME= Public Domain
LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE
diff --git a/biology/njplot/Makefile b/biology/njplot/Makefile
index f7b679c2b792..9f14186d45a2 100644
--- a/biology/njplot/Makefile
+++ b/biology/njplot/Makefile
@@ -10,6 +10,8 @@ MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/
MAINTAINER= mzaki@m.u-tokyo.ac.jp
COMMENT= Phylogenetic tree drawing program capable of interactive manipulation
+BROKEN= Unfetchable
+
OPTIONS_DEFINE= DOCS X11
OPTIONS_DEFAULT= DOCS X11
diff --git a/biology/ortep3/Makefile b/biology/ortep3/Makefile
index ce688ec8557d..32205a5491a3 100644
--- a/biology/ortep3/Makefile
+++ b/biology/ortep3/Makefile
@@ -13,6 +13,8 @@ EXTRACT_ONLY= ortep.tar.Z
MAINTAINER= ports@FreeBSD.org
COMMENT= Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
+BROKEN= Unfetchable
+
PGPLOT_LIB_DEPENDS= libpgplot.so:${PORTSDIR}/graphics/pgplot
USES= fortran
diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile
index 3128b0bf287b..ef687b66a297 100644
--- a/biology/p5-Bio-ASN1-EntrezGene/Makefile
+++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile
@@ -11,6 +11,8 @@ PKGNAMEPREFIX= p5-
MAINTAINER= mauricio@arareko.net
COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene
+BROKEN= Unfetchable
+
WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-1.09
USES= perl5 tar:tgz
diff --git a/biology/paml/Makefile b/biology/paml/Makefile
index c28a6a9be64a..cde5e4507ef9 100644
--- a/biology/paml/Makefile
+++ b/biology/paml/Makefile
@@ -10,6 +10,8 @@ DISTNAME= ${PORTNAME}${PORTVERSION}
MAINTAINER= jrm@ftfl.ca
COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML)
+BROKEN= Unfetchable
+
USES= gmake tar:tgz
WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION}/src
MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}"
diff --git a/biology/platon/Makefile b/biology/platon/Makefile
index f5b8e3b967f3..1e0c92396658 100644
--- a/biology/platon/Makefile
+++ b/biology/platon/Makefile
@@ -16,6 +16,7 @@ COMMENT= Tool for viewing molecular/crystallographic structures
# There is a charge of US$ 5000 for commercial users.
NO_CDROM= free for academic, US$ 5000 for commercial users
+BROKEN= Unfetchable
USES= fortran
USE_XORG= x11
diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile
index 64823160e0eb..516e93db62bb 100644
--- a/biology/povchem/Makefile
+++ b/biology/povchem/Makefile
@@ -17,6 +17,7 @@ COMMENT= Simple yet powerful tool to generate POV from a PDB file
RUN_DEPENDS= povray:${PORTSDIR}/graphics/povray-meta
+BROKEN= Unfetchable
NO_WRKSUBDIR= yes
USES= dos2unix
diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index c1ecbca02d81..1e63d0ed40bc 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -14,6 +14,8 @@ COMMENT= Multiple DNA/protein sequence alignment editor
LICENSE= GPLv3
+BROKEN= Unfetchable
+
LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk \
libpng.so:${PORTSDIR}/graphics/png