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authorMathieu Arnold <mat@FreeBSD.org>2015-05-06 15:16:53 +0000
committerMathieu Arnold <mat@FreeBSD.org>2015-05-06 15:16:53 +0000
commitc6457ffef432e7f18fbdf8194ed4d1993763454a (patch)
tree385230180bcda4fc6cd7a1a7465d2944e039c131 /biology
parentFix the patch to fix build with clang 3.6, it seems it was applied twice (diff)
Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler. With hat: portmgr Sponsored by: Absolight
Notes
Notes: svn path=/head/; revision=385521
Diffstat (limited to 'biology')
-rw-r--r--biology/htslib/Makefile1
-rw-r--r--biology/htslib/distinfo4
-rw-r--r--biology/samtools/Makefile2
-rw-r--r--biology/samtools/distinfo4
4 files changed, 4 insertions, 7 deletions
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index f03f87f6eaef..ad57169abdd2 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -14,7 +14,6 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
USE_GITHUB= yes
GH_ACCOUNT= samtools
-GH_COMMIT= 6042ece
USES= gmake
USE_LDCONFIG= yes
diff --git a/biology/htslib/distinfo b/biology/htslib/distinfo
index 9f6c8e9679f3..15bc94bb0b48 100644
--- a/biology/htslib/distinfo
+++ b/biology/htslib/distinfo
@@ -1,2 +1,2 @@
-SHA256 (htslib-1.2.1.tar.gz) = 6403e84e31d3a8179405c4587118144d337b29fa215c0d2948c1c0a6099c5e58
-SIZE (htslib-1.2.1.tar.gz) = 997746
+SHA256 (samtools-htslib-1.2.1_GH0.tar.gz) = 4f67f0fc73ae86f3ed4336d8d8f6da3c12066e9cb5f142b685622dd6b8f9ae42
+SIZE (samtools-htslib-1.2.1_GH0.tar.gz) = 997625
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index 7d9c8ef51b5d..ba9d9ec1737a 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -15,8 +15,6 @@ BUILD_DEPENDS= htslib>=1.2:${PORTSDIR}/biology/htslib
LIB_DEPENDS= libhts.so:${PORTSDIR}/biology/htslib
USE_GITHUB= yes
-GH_ACCOUNT= samtools
-GH_COMMIT= 6af451d
USES= gmake
SUB_FILES= pkg-message
diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo
index c53022888069..e8b155a7fc92 100644
--- a/biology/samtools/distinfo
+++ b/biology/samtools/distinfo
@@ -1,2 +1,2 @@
-SHA256 (samtools-1.2.tar.gz) = a9f8695d2d7da23f2cbc6e34820eff9169966ed7dd52254b427e0036b16b1f23
-SIZE (samtools-1.2.tar.gz) = 4318928
+SHA256 (samtools-samtools-1.2_GH0.tar.gz) = e4be60ad24fe0324b9384fe58ec2ab7359fe926fbee3115d869c447eb01a9e47
+SIZE (samtools-samtools-1.2_GH0.tar.gz) = 4318615