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authorWen Heping <wen@FreeBSD.org>2014-07-27 07:27:17 +0000
committerWen Heping <wen@FreeBSD.org>2014-07-27 07:27:17 +0000
commitaa18ea4cb6ef741832444a8cc6342b3c5738449b (patch)
tree501e65a78b835b3e503e1599e6a8e37f5f2391de /biology
parent- update to 1.31 (diff)
- Update to 1.6.924 [1]
- Reset maintainer to perl@ PR: 192088 [1] Submitted by: Kurt Jaeger<pi@FreeBSD.org> [1]
Notes
Notes: svn path=/head/; revision=363015
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-bioperl/Makefile4
-rw-r--r--biology/p5-bioperl/distinfo4
-rw-r--r--biology/p5-bioperl/files/patch-Bio-Root-Build.pm13
3 files changed, 11 insertions, 10 deletions
diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile
index f84b692d63b5..7f2a9ff819ee 100644
--- a/biology/p5-bioperl/Makefile
+++ b/biology/p5-bioperl/Makefile
@@ -2,14 +2,14 @@
# $FreeBSD$
PORTNAME= bioperl
-PORTVERSION= 1.6.923
+PORTVERSION= 1.6.924
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
PKGNAMEPREFIX= p5-
DISTNAME= BioPerl-${PORTVERSION}
-MAINTAINER= wen@FreeBSD.org
+MAINTAINER= perl@FreeBSD.org
COMMENT= Collection of Perl modules for bioinformatics
LICENSE= ART10 GPLv1
diff --git a/biology/p5-bioperl/distinfo b/biology/p5-bioperl/distinfo
index 8d785377be8f..f8ce60817098 100644
--- a/biology/p5-bioperl/distinfo
+++ b/biology/p5-bioperl/distinfo
@@ -1,2 +1,2 @@
-SHA256 (BioPerl-1.6.923.tar.gz) = 6f6ada4ebd51ad223662e4b1ddcccc37a4fb8c47f3ecbbf060e6844d361730cd
-SIZE (BioPerl-1.6.923.tar.gz) = 12562520
+SHA256 (BioPerl-1.6.924.tar.gz) = 616a7546bb3c58504de27304a0f6cb904e18b6bbcdb6a4ec8454f2bd37bb76d0
+SIZE (BioPerl-1.6.924.tar.gz) = 12623118
diff --git a/biology/p5-bioperl/files/patch-Bio-Root-Build.pm b/biology/p5-bioperl/files/patch-Bio-Root-Build.pm
index 1d759f995cf6..b4433616c5fc 100644
--- a/biology/p5-bioperl/files/patch-Bio-Root-Build.pm
+++ b/biology/p5-bioperl/files/patch-Bio-Root-Build.pm
@@ -1,6 +1,6 @@
---- Bio/Root/Build.pm.orig 2009-09-30 00:33:53.000000000 +0800
-+++ Bio/Root/Build.pm 2009-12-01 10:31:39.000000000 +0800
-@@ -127,49 +127,9 @@
+--- Bio/Root/Build.pm.orig 2014-07-10 22:13:23.000000000 +0200
++++ Bio/Root/Build.pm 2014-07-24 11:55:59.000000000 +0200
+@@ -83,49 +83,9 @@
}
}
closedir($scripts_dir);
@@ -52,11 +52,12 @@
print "\n";
}
-@@ -1136,21 +1096,9 @@
+@@ -1153,22 +1113,9 @@
sub prompt_for_network {
my ($self, $accept) = @_;
-- my $proceed = $accept ? 0 : $self->y_n("Do you want to run tests that require connection to servers across the internet\n(likely to cause some failures)? y/n", 'n');
+- my $proceed = $accept ? 0 : $self->y_n( "Do you want to run tests that require connection to servers across the internet\n"
+- . "(likely to cause some failures)? y/n", 'n');
-
- if ($proceed) {
- $self->notes('network' => 1);
@@ -76,4 +77,4 @@
+ $self->log_info(" - will not run internet-requiring tests\n");
}
- # override the build script warnings flag
+ =head2 print_build_script