diff options
| author | Joseph Mingrone <jrm@FreeBSD.org> | 2016-12-20 16:48:12 +0000 |
|---|---|---|
| committer | Joseph Mingrone <jrm@FreeBSD.org> | 2016-12-20 16:48:12 +0000 |
| commit | 78fbf405d6efe612cad998f68c4d6fabd2d17a34 (patch) | |
| tree | 9632e2eb3946846997f9813cc0ae382a40e8ffd2 /biology | |
| parent | Update to 0.4.5 (diff) | |
biology/cd-hit: Update to bug-fix release 4.6.6
Changes in version 4.6.6:
Bug fix for cd-hit-dup in variable length input when write out R1 reads
Changes in version 4.6.5:
Add filter for -aL option so that short sequences will be skipped if not
satisfy representative sequences' -aL requirement. This will make compute
faster in clustering settings where sequences in the same cluster are
required to have similar length using -aL -AL option (e.g. -aL 0.9).
Approved by: AMDmi3 (mentor) swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8186
Notes
Notes:
svn path=/head/; revision=429002
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/cd-hit/Makefile | 4 | ||||
| -rw-r--r-- | biology/cd-hit/distinfo | 5 |
2 files changed, 4 insertions, 5 deletions
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile index b28743051285..7e3d5df96f56 100644 --- a/biology/cd-hit/Makefile +++ b/biology/cd-hit/Makefile @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= cd-hit -PORTVERSION= 4.6.4 -PORTREVISION= 1 +PORTVERSION= 4.6.6 DISTVERSIONPREFIX= V CATEGORIES= biology @@ -17,7 +16,6 @@ GH_ACCOUNT= weizhongli GH_PROJECT= cdhit USES= compiler:openmp gmake shebangfix -WRKSRC= ${WRKDIR}/cdhit-${PORTVERSION} SHEBANG_FILES= ${WRKSRC}/*.pl MAKE_FLAGS= openmp=yes diff --git a/biology/cd-hit/distinfo b/biology/cd-hit/distinfo index db221603beb2..8865a2816460 100644 --- a/biology/cd-hit/distinfo +++ b/biology/cd-hit/distinfo @@ -1,2 +1,3 @@ -SHA256 (weizhongli-cdhit-V4.6.4_GH0.tar.gz) = b170108147ec91d8b5f9d10b9e8d5fd971e7aef3af6ec1e5542cbaf10d54b2fc -SIZE (weizhongli-cdhit-V4.6.4_GH0.tar.gz) = 1148426 +TIMESTAMP = 1482076217 +SHA256 (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = a0c89c969ad338f958620083b12bc69fa30fcba8246a7ec0b6243e5b2ba0365d +SIZE (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = 1149112 |