diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2023-01-30 16:03:46 -0600 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2023-01-30 16:05:19 -0600 |
| commit | 4512fe6572782dda2df7fb1d3af56144f5d1c4a4 (patch) | |
| tree | c11162911c9642ef13218a50a96af72f863cff0e /biology/vcflib/files/patch-CMakeLists.txt | |
| parent | graphics/qiv: Update to 2.3.3 (diff) | |
biology/vcflib: Update to 1.0.6
A few minor upstream fixes
Unbundle WFA2-lib, which may be useful outside vcflib
Update some submodules to latest commit (no recent releases available)
Diffstat (limited to 'biology/vcflib/files/patch-CMakeLists.txt')
| -rw-r--r-- | biology/vcflib/files/patch-CMakeLists.txt | 23 |
1 files changed, 10 insertions, 13 deletions
diff --git a/biology/vcflib/files/patch-CMakeLists.txt b/biology/vcflib/files/patch-CMakeLists.txt index 6de651bd1d98..5a7824a2dfa0 100644 --- a/biology/vcflib/files/patch-CMakeLists.txt +++ b/biology/vcflib/files/patch-CMakeLists.txt @@ -1,6 +1,6 @@ ---- CMakeLists.txt.orig 2023-01-16 08:55:05 UTC +--- CMakeLists.txt.orig 2023-01-29 04:57:02 UTC +++ CMakeLists.txt -@@ -1,7 +1,7 @@ +@@ -9,7 +9,7 @@ cmake_minimum_required(VERSION 3.16) project(vcflib) @@ -9,15 +9,12 @@ include(ExternalProject) include(FeatureSummary) -@@ -358,9 +358,9 @@ endif(HTSLIB_LOCAL) +@@ -38,7 +38,7 @@ option(PROFILING "Enable profiling" OFF) + option(GPROF "Enable gprof profiling" OFF) + option(ASAN "Use address sanitiser" OFF) + option(ZIG "Set to OFF to disable the zig code" ON) +-option(WFA_GITMODULE "Force local git submodule for WFA2LIB" ON) # disable in distros, you may need to add path to WFA_INCLUDE_DIRS ++option(WFA_GITMODULE "Force local git submodule for WFA2LIB" OFF) # disable in distros, you may need to add path to WFA_INCLUDE_DIRS - # FIXME: hard-coded compile switches need to be fixed upstream - if (ASAN) -- set(wfa_MAKE_ARGS BUILD_WFA_PARALLEL=1 BUILD_TOOLS=0 BUILD_EXAMPLES=0 CC=gcc CC_FLAGS=-fPIC setup asan lib_wfa) -+ set(wfa_MAKE_ARGS BUILD_WFA_PARALLEL=1 BUILD_TOOLS=0 BUILD_EXAMPLES=0 CC_FLAGS=-fPIC setup asan lib_wfa) - else() -- set(wfa_MAKE_ARGS BUILD_WFA_PARALLEL=1 BUILD_TOOLS=0 BUILD_EXAMPLES=0 CC=gcc CC_FLAGS=-fPIC setup lib_wfa) -+ set(wfa_MAKE_ARGS BUILD_WFA_PARALLEL=1 BUILD_TOOLS=0 BUILD_EXAMPLES=0 CC_FLAGS=-fPIC setup lib_wfa) - endif() - - # if ((${CMAKE_BUILD_TYPE} MATCHES Release) OR (${CMAKE_BUILD_TYPE} MATCHES RelWithDebInfo)) + include(CheckIPOSupported) # adds lto + check_ipo_supported(RESULT ipo_supported OUTPUT output) |