- Update to version 1.13.0 and improve FreeBSD support; it also builds

  pretty cleanly with GCC v4.2, v4.6, and Clang (modulo a few warnings)
- Sadly, do not use PORTDOCS: since DOCSDIR is set to be inside DATADIR,
  and will get appended to PLIST after @dirrm %%DATADIR%%, which upsets
  sanity checking tools; instead, list the docs explicitly in DISTFILES
  and add them to pkg-plist (guarded by %%PORTDOCS%%)

Tested on:	i386 (only)

1 files changed, 49 insertions, 0 deletions

diff --git a/biology/ugene/files/patch-src-ugenem-src-SendReportDialog.cpp b/biology/ugene/files/patch-src-ugenem-src-SendReportDialog.cpp
new file mode 100644
index 000000000000..7f75a92202e3
--- /dev/null
+++ b/biology/ugene/files/patch-src-ugenem-src-SendReportDialog.cpp
@@ -0,0 +1,49 @@
+--- src/ugenem/src/SendReportDialog.cpp.orig
++++ src/ugenem/src/SendReportDialog.cpp
+@@ -44,6 +44,10 @@
+ #include <Winbase.h> //for IsProcessorFeaturePresent
+ #endif
+ 
++#if defined(Q_OS_LINUX) || defined(Q_OS_FREEBSD)
++#include <unistd.h> // for sysconf(3)
++#endif
++
+ #define HOST_URL "http://ugene.unipro.ru"
+ //#define HOST_URL "http://127.0.0.1"
+ #define DESTINATION_URL_KEEPER_PAGE "/crash_reports_dest.html"
+@@ -241,6 +245,8 @@ QString ReportSender::getOSVersion() {
+ 
+ #elif defined(Q_OS_LINUX)
+     result = "Linux";
++#elif defined(Q_OS_FREEBSD)
++    result = "FreeBSD";
+ #elif defined(Q_OS_MAC)
+     result = "Mac ";
+     switch (QSysInfo::MacintoshVersion){
+@@ -304,17 +310,15 @@ int ReportSender::getTotalPhysicalMemory
+         totalPhysicalMemory = memory_status.ullTotalPhys / (1024 * 1024);
+     }
+ 
+-#elif defined(Q_OS_LINUX)
+-    QProcess p;
+-    p.start("awk", QStringList() << "/MemTotal/ {print $2}" << "/proc/meminfo");
+-    p.waitForFinished();
+-    QString memory = p.readAllStandardOutput();
+-    p.close();
+-    bool ok = false;
+-    qlonglong output_mem = memory.toLongLong(&ok);
+-    if (ok) {
+-        totalPhysicalMemory = output_mem / 1024;
+-    }
++#elif defined(Q_OS_LINUX) || defined(Q_OS_FREEBSD)
++    long pagesize = sysconf(_SC_PAGESIZE);
++    long numpages = sysconf(_SC_PHYS_PAGES);
++
++    // Assume that page size is always a multiple of 1024, so it can be
++    // divided without losing any precision.  On the other hand, number
++    // of pages would hardly overflow `long' when multiplied by a small
++    // number (number of pages / 1024), so we should be safe here.
++    totalPhysicalMemory = (int)(numpages * (pagesize / 1024) / 1024);
+ 
+ #elif defined(Q_OS_MAC)
+ // TODO