diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2020-06-05 01:55:49 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2020-06-05 01:55:49 +0000 |
| commit | a156fdcf52bb164e6f390b3cc02e1bfe2f2cb844 (patch) | |
| tree | 21235eac2346991dc703f228fec9710de0765d50 /biology/subread/files/patch-subread.h | |
| parent | - Fix the name of py-django30 in my previous commit (diff) | |
biology/subread: Read alignment, quantification and mutation discovery
The Subread package comprises a suite of software programs for processing
next-gen sequencing read data including:
Subread: a general-purpose read aligner
Subjunc: a read aligner developed for aligning RNA-seq reads
featureCounts: a software program developed for counting reads to genomic
features such as genes, exons, promoters and genomic bins.
Sublong: a long-read aligner that is designed based on seed-and-vote.
exactSNP: discovers SNPs by testing signals against local background noise.
Notes
Notes:
svn path=/head/; revision=537982
Diffstat (limited to 'biology/subread/files/patch-subread.h')
| -rw-r--r-- | biology/subread/files/patch-subread.h | 11 |
1 files changed, 11 insertions, 0 deletions
diff --git a/biology/subread/files/patch-subread.h b/biology/subread/files/patch-subread.h new file mode 100644 index 000000000000..3916daa6835f --- /dev/null +++ b/biology/subread/files/patch-subread.h @@ -0,0 +1,11 @@ +--- subread.h.orig 2018-11-08 14:46:06 UTC ++++ subread.h +@@ -102,7 +102,7 @@ + + #define USE_POSIX_MUTEX_LOCK + +-#if defined(MACOS) || defined(FREEBSD) || defined(USE_POSIX_MUTEX_LOCK) ++#if defined(__APPLE__) || defined(__FreeBSD__) || defined(USE_POSIX_MUTEX_LOCK) + typedef pthread_mutex_t subread_lock_t; + #define pthread_spinlock_t pthread_mutex_t + #define pthread_spin_lock pthread_mutex_lock |