diff options
| author | Felippe de Meirelles Motta <lippe@FreeBSD.org> | 2008-06-21 00:01:57 +0000 |
|---|---|---|
| committer | Felippe de Meirelles Motta <lippe@FreeBSD.org> | 2008-06-21 00:01:57 +0000 |
| commit | 702ce223052d37a75d90d1e9a7c23cce604c68e7 (patch) | |
| tree | b6ffa11c790521083f26bb569a7e35357201671e /biology/ssaha/files/patch-SequenceReaderFasta.h | |
| parent | - Update to 0.2.1.1-alpha. (diff) | |
SSAHA is a software tool for very fast matching and alignment of DNA
sequences. It stands for Sequence Search and Alignment by Hashing
Algorithm. It achieves its fast search speed by converting sequence
information into a `hash table' data structure, which can then be
searched very rapidly for matches.
WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/
PR: ports/124525
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by: gabor (mentor, implicit)
Notes
Notes:
svn path=/head/; revision=215429
Diffstat (limited to 'biology/ssaha/files/patch-SequenceReaderFasta.h')
| -rw-r--r-- | biology/ssaha/files/patch-SequenceReaderFasta.h | 11 |
1 files changed, 11 insertions, 0 deletions
diff --git a/biology/ssaha/files/patch-SequenceReaderFasta.h b/biology/ssaha/files/patch-SequenceReaderFasta.h new file mode 100644 index 000000000000..a2988fbb91d8 --- /dev/null +++ b/biology/ssaha/files/patch-SequenceReaderFasta.h @@ -0,0 +1,11 @@ +--- ./SequenceReader/SequenceReaderFasta.h.orig 2004-03-01 13:51:29.000000000 -0300 ++++ ./SequenceReader/SequenceReaderFasta.h 2008-06-12 15:39:31.000000000 -0300 +@@ -55,7 +55,7 @@ + { + public: + SequenceReaderFileState( SequenceNumber lsn, std::streampos fp ) : +- filePos_(fp), SequenceReaderState(lsn) {} ++ SequenceReaderState(lsn), filePos_(fp) {} + // no point in making this private as it's const + const std::streampos filePos_; + }; |