Update to 0.3.2.

3 files changed, 21 insertions, 4 deletions

diff --git a/biology/ruby-bio/Makefile b/biology/ruby-bio/Makefile
index b21101ad859f..ac9b6e05fc0a 100644
--- a/biology/ruby-bio/Makefile
+++ b/biology/ruby-bio/Makefile
@@ -6,12 +6,12 @@
 #
 
 PORTNAME=	bio
-PORTVERSION=	0.3.20011024
+PORTVERSION=	0.3.2
 CATEGORIES=	biology ruby
 MASTER_SITES=	ftp://ftp.bioruby.org/bioruby/src/
 MASTER_SITE_SUBDIR=	knu
 PKGNAMEPREFIX=	${RUBY_PKGNAMEPREFIX}
-DISTNAME=	${PORTNAME}ruby-${PORTVERSION:R}-${PORTVERSION:E}
+DISTNAME=	${PORTNAME}ruby-${PORTVERSION}
 EXTRACT_SUFX=	.tgz
 DIST_SUBDIR=	ruby
 
@@ -27,8 +27,9 @@ do-install:
 .if !defined(NOPORTDOCS)
 	${MKDIR} ${RUBY_EXAMPLESDIR}/${PORTNAME}
 	${CP} -R ${WRKSRC}/sample/ ${RUBY_EXAMPLESDIR}/${PORTNAME}/
-	${MKDIR} ${RUBY_DOCDIR}/${PORTNAME}
+	${MKDIR} ${RUBY_DOCDIR}/${PORTNAME}/ja
 	${CP} -R ${WRKSRC}/README ${RUBY_DOCDIR}/${PORTNAME}/
+	${INSTALL_DATA} ${WRKSRC}/doc/*.ja ${RUBY_DOCDIR}/${PORTNAME}/ja/
 .endif
 
 .include <bsd.port.mk>
diff --git a/biology/ruby-bio/distinfo b/biology/ruby-bio/distinfo
index dd75c7f93ab2..6c70ba54c5e7 100644
--- a/biology/ruby-bio/distinfo
+++ b/biology/ruby-bio/distinfo
@@ -1 +1 @@
-MD5 (ruby/bioruby-0.3-20011024.tgz) = b33c40a43ee47236837dad280814384b
+MD5 (ruby/bioruby-0.3.2.tgz) = 43ca066129edfe429e0846997edbb7ed
diff --git a/biology/ruby-bio/pkg-plist b/biology/ruby-bio/pkg-plist
index 42fbbfc5b0c7..17953708be19 100644
--- a/biology/ruby-bio/pkg-plist
+++ b/biology/ruby-bio/pkg-plist
@@ -1,5 +1,6 @@
 bin/dbget
 %%RUBY_SITELIBDIR%%/bio.rb
+%%RUBY_SITELIBDIR%%/bio/appl/blast.rb
 %%RUBY_SITELIBDIR%%/bio/data/aa.rb
 %%RUBY_SITELIBDIR%%/bio/data/codontable.rb
 %%RUBY_SITELIBDIR%%/bio/data/keggorg.rb
@@ -7,6 +8,8 @@ bin/dbget
 %%RUBY_SITELIBDIR%%/bio/db.rb
 %%RUBY_SITELIBDIR%%/bio/db/aaindex.rb
 %%RUBY_SITELIBDIR%%/bio/db/ddbj.rb
+%%RUBY_SITELIBDIR%%/bio/db/embl.rb
+%%RUBY_SITELIBDIR%%/bio/db/fasta.rb
 %%RUBY_SITELIBDIR%%/bio/db/genbank.rb
 %%RUBY_SITELIBDIR%%/bio/db/kegg/brite.rb
 %%RUBY_SITELIBDIR%%/bio/db/kegg/cell.rb
@@ -14,12 +17,18 @@ bin/dbget
 %%RUBY_SITELIBDIR%%/bio/db/kegg/enzyme.rb
 %%RUBY_SITELIBDIR%%/bio/db/kegg/genes.rb
 %%RUBY_SITELIBDIR%%/bio/db/kegg/genome.rb
+%%RUBY_SITELIBDIR%%/bio/db/kegg/keggtab.rb
+%%RUBY_SITELIBDIR%%/bio/db/kegg/microarray.rb
 %%RUBY_SITELIBDIR%%/bio/db/litdb.rb
 %%RUBY_SITELIBDIR%%/bio/db/medline.rb
 %%RUBY_SITELIBDIR%%/bio/db/prosite.rb
 %%RUBY_SITELIBDIR%%/bio/db/refseq.rb
+%%RUBY_SITELIBDIR%%/bio/db/sptr.rb
+%%RUBY_SITELIBDIR%%/bio/db/swissprot.rb
 %%RUBY_SITELIBDIR%%/bio/db/transfac.rb
+%%RUBY_SITELIBDIR%%/bio/db/trembl.rb
 %%RUBY_SITELIBDIR%%/bio/io/dbget.rb
+%%RUBY_SITELIBDIR%%/bio/io/flatfile.rb
 %%RUBY_SITELIBDIR%%/bio/io/pubmed.rb
 %%RUBY_SITELIBDIR%%/bio/location.rb
 %%RUBY_SITELIBDIR%%/bio/matrix.rb
@@ -27,6 +36,8 @@ bin/dbget
 %%RUBY_SITELIBDIR%%/bio/reference.rb
 %%RUBY_SITELIBDIR%%/bio/sequence.rb
 %%RUBY_SITELIBDIR%%/bio/util/fold.rb
+%%RUBY_SITELIBDIR%%/bio/util/hoge.rb
+@dirrm %%RUBY_SITELIBDIR%%/bio/appl
 @dirrm %%RUBY_SITELIBDIR%%/bio/data
 @dirrm %%RUBY_SITELIBDIR%%/bio/db/kegg
 @dirrm %%RUBY_SITELIBDIR%%/bio/db
@@ -47,4 +58,9 @@ bin/dbget
 %%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/vs-genes.rb
 %%PORTDOCS%%@dirrm %%RUBY_EXAMPLESDIR%%/bio
 %%PORTDOCS%%%%RUBY_DOCDIR%%/bio/README
+%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/BioRuby.rd.ja
+%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/Design.rd.ja
+%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/TODO.rd.ja
+%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/Tutorial.rd.ja
+%%PORTDOCS%%@dirrm %%RUBY_DOCDIR%%/bio/ja
 %%PORTDOCS%%@dirrm %%RUBY_DOCDIR%%/bio