diff options
| author | Kurt Jaeger <pi@FreeBSD.org> | 2014-08-23 18:04:58 +0000 |
|---|---|---|
| committer | Kurt Jaeger <pi@FreeBSD.org> | 2014-08-23 18:04:58 +0000 |
| commit | 690da7ea383f1f7ba029563658b17f1a2544007b (patch) | |
| tree | 23e972a9950cc8d2fbf2c0128d929e3655a093ab /biology/phrap/files/patch-tig_node.c | |
| parent | archivers/rubygem-rubyzip: update to 1.1.6 (diff) | |
update ports:
biology/phrab
biology/phred
biology/consed
Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.
PR: 191336
Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
Notes
Notes:
svn path=/head/; revision=365765
Diffstat (limited to 'biology/phrap/files/patch-tig_node.c')
| -rw-r--r-- | biology/phrap/files/patch-tig_node.c | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/biology/phrap/files/patch-tig_node.c b/biology/phrap/files/patch-tig_node.c new file mode 100644 index 000000000000..d2506b8beeda --- /dev/null +++ b/biology/phrap/files/patch-tig_node.c @@ -0,0 +1,18 @@ +--- ./tig_node.c.orig 2007-11-06 23:02:49.000000000 +0100 ++++ ./tig_node.c 2014-08-02 12:39:30.000000000 +0200 +@@ -138,6 +138,7 @@ + tig_node->best_stack_length[0] = tig_node->best_stack_length[1] = 0; + } + ++void + alloc_edge(contig, orientation, pair, reverse) + Contig *contig; + int orientation, reverse; +@@ -176,6 +177,7 @@ + tig_node->edges[orientation] = edge; + } + ++void + find_best_paths(gap_cutoff, LLR_reject_cutoff, LLR_join_cutoff) + int gap_cutoff, LLR_reject_cutoff, LLR_join_cutoff; + { |