biology/molden: 5.0.7 -> 5.4

Changes:
- Missing hydrogens atoms of HETATM molecules (pdb files) are stored locally.
- Pdb files can now be clipped.
- Fixes missing residues. Introduces an alternative way of generating rotamers,
  without using z-matrices. This potentially a faster algorithm.
- Supports Movie making through avconv/ffmpeg.
- calculates the Electron Localization Function (ELF).
- Updated code of ambfor/ambmd to speed up optimisations/MD of proteins
  solvated in water (Jan, 2014).

PR:		204341

5 files changed, 799 insertions, 192 deletions

diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index 832b597c5c5a..c8519bd4add1 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	molden
-PORTVERSION=	5.0.7
-PORTREVISION=	2
+PORTVERSION=	5.4
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/
@@ -14,7 +13,7 @@ COMMENT=	Display molecular orbitals and electron densities in 2D and 3D
 
 RESTRICTED=	free for academic, non profit usage; do not re-distribute source and executable.
 
-WRKSRC=		${WRKDIR}/${PORTNAME}${PORTVERSION:R}
+WRKSRC=		${WRKDIR}/${PORTNAME}${PORTVERSION}
 
 USES=		fortran gmake
 USE_XORG=	x11
diff --git a/biology/molden/distinfo b/biology/molden/distinfo
index 32892d7bfcaa..3feb2b1ebd3c 100644
--- a/biology/molden/distinfo
+++ b/biology/molden/distinfo
@@ -1,2 +1,2 @@
-SHA256 (molden5.0.7.tar.gz) = e46bd783acdb27277731afd0693681dab91f0af4f281be2ce2d83777038ba62e
-SIZE (molden5.0.7.tar.gz) = 3076093
+SHA256 (molden5.4.tar.gz) = c73bb678a97598cd41ff568f49f276e555302b98144c9679b59e6d0eadf4669b
+SIZE (molden5.4.tar.gz) = 4914556
diff --git a/biology/molden/files/patch-ambfor-makefile b/biology/molden/files/patch-ambfor-makefile
index 4ac7d7be5838..5b71286b335f 100644
--- a/biology/molden/files/patch-ambfor-makefile
+++ b/biology/molden/files/patch-ambfor-makefile
@@ -1,10 +1,10 @@
---- ambfor/makefile.orig	2011-04-29 20:40:50.000000000 +0900
-+++ ambfor/makefile	2012-09-24 02:50:23.000000000 +0900
+--- ambfor/makefile.orig	2015-05-02 19:49:10 UTC
++++ ambfor/makefile
 @@ -12,12 +12,12 @@
  #
  # 
  
--CFLAGS = -c -g
+-CFLAGS = -c -g ${EXT}
 +CFLAGS += -c
  #FC = g77 
 -FC = gfortran
@@ -14,10 +14,10 @@
  LIBS =  -lm
 -LDR = ${FC} -g
 +LDR = ${FC}
+ EXT :=
  
- OBJS = angle.o bond.o charge.o conn.o enegrd.o getinp.o param.o \
- 	tors.o vdwlj.o math.o switch.o wrtout.o pbc.o 
-@@ -47,7 +47,7 @@
+ ifeq ($(uname), Darwin)
+@@ -56,7 +56,7 @@ ambmd:	md.o verlet.o qvdw.o allocmd.o $(
  	$(LDR) -o ambmd md.o verlet.o qvdw.o allocmd.o $(OBJS) $(LIBS)
  
  ambfor.o:	ambfor.f
diff --git a/biology/molden/files/patch-surf-Makefile b/biology/molden/files/patch-surf-Makefile
new file mode 100644
index 000000000000..94b6eea01746
--- /dev/null
+++ b/biology/molden/files/patch-surf-Makefile
@@ -0,0 +1,789 @@
+--- surf/Makefile.orig	2015-05-02 19:48:48 UTC
++++ surf/Makefile
+@@ -1,12 +1,8 @@
+ # Compilation flags
+-#CC	    = cc
+-CC	    = cc
+ INCLUDE     = -I. 
+ #LINCLUDE    = -lcurses -ltermcap -lm
+ LINCLUDE    = -lm
+-OPT_CFLAGS  = -O2 $(FLAGS) $(INCLUDE)
+ #CFLAGS	    = -g $(FLAGS) $(INCLUDE)
+-CFLAGS	    = -O2 $(FLAGS) $(INCLUDE) ${EXT}
+ 
+ ifeq ($(uname), Darwin)
+ #
+@@ -73,670 +69,117 @@ depend: $(DEPEND)
+ # DO NOT DELETE
+ 
+ surf.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-surf.o: /usr/include/sys/_symbol_aliasing.h
+-surf.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h
+-surf.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-surf.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-surf.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h
+-surf.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h
+-surf.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-surf.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h
+-surf.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-surf.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h
+-surf.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h
+-surf.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h
+-surf.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-surf.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h
+-surf.o: /usr/include/mach/i386/_structs.h
+-surf.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-surf.o: /usr/include/sys/_types/_sigaltstack.h
+-surf.o: /usr/include/sys/_types/_ucontext.h
+-surf.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h
+-surf.o: /usr/include/sys/resource.h /usr/include/stdint.h
+-surf.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h
+-surf.o: /usr/include/sys/_types/_int32_t.h /usr/include/sys/_types/_int64_t.h
+-surf.o: /usr/include/_types/_uint8_t.h /usr/include/_types/_uint16_t.h
+-surf.o: /usr/include/_types/_uint32_t.h /usr/include/_types/_uint64_t.h
+-surf.o: /usr/include/sys/_types/_intptr_t.h
+-surf.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h
+-surf.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h
+-surf.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-surf.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h
+-surf.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h
+-surf.o: /usr/include/sys/_types/_ct_rune_t.h
+-surf.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h
+-surf.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-surf.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h
+-surf.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h
+-surf.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-surf.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-surf.o: /usr/include/sys/_types/_fd_def.h /usr/include/sys/_types/_timespec.h
+-surf.o: /usr/include/sys/_types/_time_t.h
+-surf.o: /usr/include/sys/_types/_suseconds_t.h
+-surf.o: /usr/include/sys/_types/_fd_setsize.h
+-surf.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h
+-surf.o: /usr/include/sys/_types/_fd_isset.h
+-surf.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h
+-surf.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h
+-surf.o: /usr/include/sys/_select.h linalg.h
++surf.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++surf.o: /usr/include/machine/_types.h /usr/include/math.h
++surf.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++surf.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
++surf.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
++surf.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
++surf.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
++surf.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h
+ io.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-io.o: /usr/include/sys/_symbol_aliasing.h
+-io.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h
+-io.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-io.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-io.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h
+-io.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h
+-io.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-io.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h
+-io.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-io.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h
+-io.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h
+-io.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h
+-io.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-io.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h
+-io.o: /usr/include/mach/i386/_structs.h
+-io.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-io.o: /usr/include/sys/_types/_sigaltstack.h
+-io.o: /usr/include/sys/_types/_ucontext.h /usr/include/sys/_types/_sigset_t.h
+-io.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h
+-io.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h
+-io.o: /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h
+-io.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h
+-io.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h
+-io.o: /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h
+-io.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h
+-io.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h
+-io.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-io.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h
+-io.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h
+-io.o: /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h
+-io.o: /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h
+-io.o: /usr/include/i386/types.h /usr/include/sys/_types/_dev_t.h
+-io.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h
+-io.o: /usr/include/sys/_types/_rsize_t.h /usr/include/sys/_types/_errno_t.h
+-io.o: /usr/include/strings.h /usr/include/secure/_string.h
+-io.o: /usr/include/sys/time.h /usr/include/sys/_types/_fd_def.h
+-io.o: /usr/include/sys/_types/_timespec.h /usr/include/sys/_types/_time_t.h
+-io.o: /usr/include/sys/_types/_suseconds_t.h
+-io.o: /usr/include/sys/_types/_fd_setsize.h /usr/include/sys/_types/_fd_set.h
+-io.o: /usr/include/sys/_types/_fd_clr.h /usr/include/sys/_types/_fd_isset.h
+-io.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h
+-io.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h
+-io.o: /usr/include/sys/_select.h linalg.h
++io.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++io.o: /usr/include/machine/_types.h /usr/include/math.h
++io.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++io.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
++io.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
++io.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
++io.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
++io.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h
+ compute.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-compute.o: /usr/include/sys/_symbol_aliasing.h
+-compute.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h
+-compute.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-compute.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-compute.o: /usr/include/i386/_types.h
+-compute.o: /usr/include/sys/_pthread/_pthread_types.h
+-compute.o: /usr/include/sys/_types/_va_list.h
+-compute.o: /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h
+-compute.o: /usr/include/sys/stdio.h /usr/include/sys/_types/_off_t.h
+-compute.o: /usr/include/sys/_types/_ssize_t.h /usr/include/secure/_stdio.h
+-compute.o: /usr/include/secure/_common.h /usr/include/math.h
+-compute.o: /usr/include/stdlib.h /usr/include/sys/wait.h
+-compute.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h
+-compute.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h
+-compute.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-compute.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h
+-compute.o: /usr/include/mach/i386/_structs.h
+-compute.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-compute.o: /usr/include/sys/_types/_sigaltstack.h
+-compute.o: /usr/include/sys/_types/_ucontext.h
+-compute.o: /usr/include/sys/_types/_sigset_t.h
+-compute.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h
+-compute.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h
+-compute.o: /usr/include/sys/_types/_int16_t.h
+-compute.o: /usr/include/sys/_types/_int32_t.h
+-compute.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h
+-compute.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h
+-compute.o: /usr/include/_types/_uint64_t.h
+-compute.o: /usr/include/sys/_types/_intptr_t.h
+-compute.o: /usr/include/sys/_types/_uintptr_t.h
+-compute.o: /usr/include/_types/_intmax_t.h /usr/include/_types/_uintmax_t.h
+-compute.o: /usr/include/sys/_types/_timeval.h /usr/include/machine/endian.h
+-compute.o: /usr/include/i386/endian.h /usr/include/sys/_endian.h
+-compute.o: /usr/include/libkern/_OSByteOrder.h
+-compute.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h
+-compute.o: /usr/include/sys/_types/_ct_rune_t.h
+-compute.o: /usr/include/sys/_types/_rune_t.h
+-compute.o: /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h
+-compute.o: /usr/include/i386/types.h /usr/include/sys/_types/_dev_t.h
+-compute.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h
+-compute.o: /usr/include/sys/_types/_rsize_t.h
+-compute.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-compute.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-compute.o: /usr/include/sys/_types/_fd_def.h
+-compute.o: /usr/include/sys/_types/_timespec.h
+-compute.o: /usr/include/sys/_types/_time_t.h
+-compute.o: /usr/include/sys/_types/_suseconds_t.h
+-compute.o: /usr/include/sys/_types/_fd_setsize.h
+-compute.o: /usr/include/sys/_types/_fd_set.h
+-compute.o: /usr/include/sys/_types/_fd_clr.h
+-compute.o: /usr/include/sys/_types/_fd_isset.h
+-compute.o: /usr/include/sys/_types/_fd_zero.h
+-compute.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h
+-compute.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h
+-compute.o: linalg.h chull.h dual.h
++compute.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++compute.o: /usr/include/machine/_types.h /usr/include/math.h
++compute.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++compute.o: /usr/include/string.h /usr/include/strings.h
++compute.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
++compute.o: /usr/include/sys/types.h /usr/include/machine/endian.h
++compute.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
++compute.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
++compute.o: /usr/include/time.h linalg.h chull.h dual.h
+ dual.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-dual.o: /usr/include/sys/_symbol_aliasing.h
+-dual.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h
+-dual.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-dual.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-dual.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h
+-dual.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h
+-dual.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-dual.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h
+-dual.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-dual.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h
+-dual.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h
+-dual.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h
+-dual.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-dual.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h
+-dual.o: /usr/include/mach/i386/_structs.h
+-dual.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-dual.o: /usr/include/sys/_types/_sigaltstack.h
+-dual.o: /usr/include/sys/_types/_ucontext.h
+-dual.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h
+-dual.o: /usr/include/sys/resource.h /usr/include/stdint.h
+-dual.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h
+-dual.o: /usr/include/sys/_types/_int32_t.h /usr/include/sys/_types/_int64_t.h
+-dual.o: /usr/include/_types/_uint8_t.h /usr/include/_types/_uint16_t.h
+-dual.o: /usr/include/_types/_uint32_t.h /usr/include/_types/_uint64_t.h
+-dual.o: /usr/include/sys/_types/_intptr_t.h
+-dual.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h
+-dual.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h
+-dual.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-dual.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h
+-dual.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h
+-dual.o: /usr/include/sys/_types/_ct_rune_t.h
+-dual.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h
+-dual.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-dual.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h
+-dual.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h
+-dual.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-dual.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-dual.o: /usr/include/sys/_types/_fd_def.h /usr/include/sys/_types/_timespec.h
+-dual.o: /usr/include/sys/_types/_time_t.h
+-dual.o: /usr/include/sys/_types/_suseconds_t.h
+-dual.o: /usr/include/sys/_types/_fd_setsize.h
+-dual.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h
+-dual.o: /usr/include/sys/_types/_fd_isset.h
+-dual.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h
+-dual.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h
+-dual.o: /usr/include/sys/_select.h linalg.h dual.h chull.h
++dual.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++dual.o: /usr/include/machine/_types.h /usr/include/math.h
++dual.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++dual.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
++dual.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
++dual.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
++dual.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
++dual.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h dual.h
++dual.o: chull.h
+ utils.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-utils.o: /usr/include/sys/_symbol_aliasing.h
+-utils.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h
+-utils.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-utils.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-utils.o: /usr/include/i386/_types.h
+-utils.o: /usr/include/sys/_pthread/_pthread_types.h
+-utils.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h
+-utils.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-utils.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h
+-utils.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-utils.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h
+-utils.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h
+-utils.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h
+-utils.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-utils.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h
+-utils.o: /usr/include/mach/i386/_structs.h
+-utils.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-utils.o: /usr/include/sys/_types/_sigaltstack.h
+-utils.o: /usr/include/sys/_types/_ucontext.h
+-utils.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h
+-utils.o: /usr/include/sys/resource.h /usr/include/stdint.h
+-utils.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h
+-utils.o: /usr/include/sys/_types/_int32_t.h
+-utils.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h
+-utils.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h
+-utils.o: /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h
+-utils.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h
+-utils.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h
+-utils.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-utils.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h
+-utils.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h
+-utils.o: /usr/include/sys/_types/_ct_rune_t.h
+-utils.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h
+-utils.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-utils.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h
+-utils.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h
+-utils.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-utils.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-utils.o: /usr/include/sys/_types/_fd_def.h
+-utils.o: /usr/include/sys/_types/_timespec.h
+-utils.o: /usr/include/sys/_types/_time_t.h
+-utils.o: /usr/include/sys/_types/_suseconds_t.h
+-utils.o: /usr/include/sys/_types/_fd_setsize.h
+-utils.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h
+-utils.o: /usr/include/sys/_types/_fd_isset.h
+-utils.o: /usr/include/sys/_types/_fd_zero.h
+-utils.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h
+-utils.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h
+-utils.o: linalg.h
++utils.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++utils.o: /usr/include/machine/_types.h /usr/include/math.h
++utils.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++utils.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
++utils.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
++utils.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
++utils.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
++utils.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h
+ lp.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-lp.o: /usr/include/sys/_symbol_aliasing.h
+-lp.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h
+-lp.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-lp.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-lp.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h
+-lp.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h
+-lp.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-lp.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h
+-lp.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-lp.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h
+-lp.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h
+-lp.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h
+-lp.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-lp.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h
+-lp.o: /usr/include/mach/i386/_structs.h
+-lp.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-lp.o: /usr/include/sys/_types/_sigaltstack.h
+-lp.o: /usr/include/sys/_types/_ucontext.h /usr/include/sys/_types/_sigset_t.h
+-lp.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h
+-lp.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h
+-lp.o: /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h
+-lp.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h
+-lp.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h
+-lp.o: /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h
+-lp.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h
+-lp.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h
+-lp.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-lp.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h
+-lp.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h
+-lp.o: /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h
+-lp.o: /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h
+-lp.o: /usr/include/i386/types.h /usr/include/sys/_types/_dev_t.h
+-lp.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h
+-lp.o: /usr/include/sys/_types/_rsize_t.h /usr/include/sys/_types/_errno_t.h
+-lp.o: /usr/include/strings.h /usr/include/secure/_string.h
+-lp.o: /usr/include/sys/time.h /usr/include/sys/_types/_fd_def.h
+-lp.o: /usr/include/sys/_types/_timespec.h /usr/include/sys/_types/_time_t.h
+-lp.o: /usr/include/sys/_types/_suseconds_t.h
+-lp.o: /usr/include/sys/_types/_fd_setsize.h /usr/include/sys/_types/_fd_set.h
+-lp.o: /usr/include/sys/_types/_fd_clr.h /usr/include/sys/_types/_fd_isset.h
+-lp.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h
+-lp.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h
+-lp.o: /usr/include/sys/_select.h linalg.h
++lp.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++lp.o: /usr/include/machine/_types.h /usr/include/math.h
++lp.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++lp.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
++lp.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
++lp.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
++lp.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
++lp.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h
+ chull.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-chull.o: /usr/include/sys/_symbol_aliasing.h
+-chull.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h
+-chull.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-chull.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-chull.o: /usr/include/i386/_types.h
+-chull.o: /usr/include/sys/_pthread/_pthread_types.h
+-chull.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h
+-chull.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-chull.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h
+-chull.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-chull.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h
+-chull.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h
+-chull.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h
+-chull.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-chull.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h
+-chull.o: /usr/include/mach/i386/_structs.h
+-chull.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-chull.o: /usr/include/sys/_types/_sigaltstack.h
+-chull.o: /usr/include/sys/_types/_ucontext.h
+-chull.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h
+-chull.o: /usr/include/sys/resource.h /usr/include/stdint.h
+-chull.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h
+-chull.o: /usr/include/sys/_types/_int32_t.h
+-chull.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h
+-chull.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h
+-chull.o: /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h
+-chull.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h
+-chull.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h
+-chull.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-chull.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h
+-chull.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h
+-chull.o: /usr/include/sys/_types/_ct_rune_t.h
+-chull.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h
+-chull.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-chull.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h
+-chull.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h
+-chull.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-chull.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-chull.o: /usr/include/sys/_types/_fd_def.h
+-chull.o: /usr/include/sys/_types/_timespec.h
+-chull.o: /usr/include/sys/_types/_time_t.h
+-chull.o: /usr/include/sys/_types/_suseconds_t.h
+-chull.o: /usr/include/sys/_types/_fd_setsize.h
+-chull.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h
+-chull.o: /usr/include/sys/_types/_fd_isset.h
+-chull.o: /usr/include/sys/_types/_fd_zero.h
+-chull.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h
+-chull.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h
+-chull.o: linalg.h chull.h
++chull.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++chull.o: /usr/include/machine/_types.h /usr/include/math.h
++chull.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++chull.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
++chull.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
++chull.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
++chull.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
++chull.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h chull.h
+ tessel_cases.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-tessel_cases.o: /usr/include/sys/_symbol_aliasing.h
+-tessel_cases.o: /usr/include/sys/_posix_availability.h
+-tessel_cases.o: /usr/include/Availability.h
+-tessel_cases.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-tessel_cases.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-tessel_cases.o: /usr/include/i386/_types.h
+-tessel_cases.o: /usr/include/sys/_pthread/_pthread_types.h
+-tessel_cases.o: /usr/include/sys/_types/_va_list.h
+-tessel_cases.o: /usr/include/sys/_types/_size_t.h
+-tessel_cases.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-tessel_cases.o: /usr/include/sys/_types/_off_t.h
+-tessel_cases.o: /usr/include/sys/_types/_ssize_t.h
+-tessel_cases.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-tessel_cases.o: /usr/include/math.h /usr/include/stdlib.h
+-tessel_cases.o: /usr/include/sys/wait.h /usr/include/sys/_types/_pid_t.h
+-tessel_cases.o: /usr/include/sys/_types/_id_t.h /usr/include/sys/signal.h
+-tessel_cases.o: /usr/include/sys/appleapiopts.h /usr/include/machine/signal.h
+-tessel_cases.o: /usr/include/i386/signal.h /usr/include/machine/_mcontext.h
+-tessel_cases.o: /usr/include/i386/_mcontext.h
+-tessel_cases.o: /usr/include/mach/i386/_structs.h
+-tessel_cases.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-tessel_cases.o: /usr/include/sys/_types/_sigaltstack.h
+-tessel_cases.o: /usr/include/sys/_types/_ucontext.h
+-tessel_cases.o: /usr/include/sys/_types/_sigset_t.h
+-tessel_cases.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h
+-tessel_cases.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h
+-tessel_cases.o: /usr/include/sys/_types/_int16_t.h
+-tessel_cases.o: /usr/include/sys/_types/_int32_t.h
+-tessel_cases.o: /usr/include/sys/_types/_int64_t.h
+-tessel_cases.o: /usr/include/_types/_uint8_t.h
+-tessel_cases.o: /usr/include/_types/_uint16_t.h
+-tessel_cases.o: /usr/include/_types/_uint32_t.h
+-tessel_cases.o: /usr/include/_types/_uint64_t.h
+-tessel_cases.o: /usr/include/sys/_types/_intptr_t.h
+-tessel_cases.o: /usr/include/sys/_types/_uintptr_t.h
+-tessel_cases.o: /usr/include/_types/_intmax_t.h
+-tessel_cases.o: /usr/include/_types/_uintmax_t.h
+-tessel_cases.o: /usr/include/sys/_types/_timeval.h
+-tessel_cases.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-tessel_cases.o: /usr/include/sys/_endian.h
+-tessel_cases.o: /usr/include/libkern/_OSByteOrder.h
+-tessel_cases.o: /usr/include/libkern/i386/_OSByteOrder.h
+-tessel_cases.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h
+-tessel_cases.o: /usr/include/sys/_types/_rune_t.h
+-tessel_cases.o: /usr/include/sys/_types/_wchar_t.h
+-tessel_cases.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-tessel_cases.o: /usr/include/sys/_types/_dev_t.h
+-tessel_cases.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h
+-tessel_cases.o: /usr/include/sys/_types/_rsize_t.h
+-tessel_cases.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-tessel_cases.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-tessel_cases.o: /usr/include/sys/_types/_fd_def.h
+-tessel_cases.o: /usr/include/sys/_types/_timespec.h
+-tessel_cases.o: /usr/include/sys/_types/_time_t.h
+-tessel_cases.o: /usr/include/sys/_types/_suseconds_t.h
+-tessel_cases.o: /usr/include/sys/_types/_fd_setsize.h
+-tessel_cases.o: /usr/include/sys/_types/_fd_set.h
+-tessel_cases.o: /usr/include/sys/_types/_fd_clr.h
+-tessel_cases.o: /usr/include/sys/_types/_fd_isset.h
+-tessel_cases.o: /usr/include/sys/_types/_fd_zero.h
+-tessel_cases.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h
+-tessel_cases.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h
+-tessel_cases.o: linalg.h dual.h
++tessel_cases.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++tessel_cases.o: /usr/include/machine/_types.h /usr/include/math.h
++tessel_cases.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++tessel_cases.o: /usr/include/string.h /usr/include/strings.h
++tessel_cases.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
++tessel_cases.o: /usr/include/sys/types.h /usr/include/machine/endian.h
++tessel_cases.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
++tessel_cases.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
++tessel_cases.o: /usr/include/time.h linalg.h dual.h
+ tessel_patches.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-tessel_patches.o: /usr/include/sys/_symbol_aliasing.h
+-tessel_patches.o: /usr/include/sys/_posix_availability.h
+-tessel_patches.o: /usr/include/Availability.h
+-tessel_patches.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-tessel_patches.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-tessel_patches.o: /usr/include/i386/_types.h
+-tessel_patches.o: /usr/include/sys/_pthread/_pthread_types.h
+-tessel_patches.o: /usr/include/sys/_types/_va_list.h
+-tessel_patches.o: /usr/include/sys/_types/_size_t.h
+-tessel_patches.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-tessel_patches.o: /usr/include/sys/_types/_off_t.h
+-tessel_patches.o: /usr/include/sys/_types/_ssize_t.h
+-tessel_patches.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-tessel_patches.o: /usr/include/math.h /usr/include/stdlib.h
+-tessel_patches.o: /usr/include/sys/wait.h /usr/include/sys/_types/_pid_t.h
+-tessel_patches.o: /usr/include/sys/_types/_id_t.h /usr/include/sys/signal.h
+-tessel_patches.o: /usr/include/sys/appleapiopts.h
+-tessel_patches.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-tessel_patches.o: /usr/include/machine/_mcontext.h
+-tessel_patches.o: /usr/include/i386/_mcontext.h
+-tessel_patches.o: /usr/include/mach/i386/_structs.h
+-tessel_patches.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-tessel_patches.o: /usr/include/sys/_types/_sigaltstack.h
+-tessel_patches.o: /usr/include/sys/_types/_ucontext.h
+-tessel_patches.o: /usr/include/sys/_types/_sigset_t.h
+-tessel_patches.o: /usr/include/sys/_types/_uid_t.h
+-tessel_patches.o: /usr/include/sys/resource.h /usr/include/stdint.h
+-tessel_patches.o: /usr/include/sys/_types/_int8_t.h
+-tessel_patches.o: /usr/include/sys/_types/_int16_t.h
+-tessel_patches.o: /usr/include/sys/_types/_int32_t.h
+-tessel_patches.o: /usr/include/sys/_types/_int64_t.h
+-tessel_patches.o: /usr/include/_types/_uint8_t.h
+-tessel_patches.o: /usr/include/_types/_uint16_t.h
+-tessel_patches.o: /usr/include/_types/_uint32_t.h
+-tessel_patches.o: /usr/include/_types/_uint64_t.h
+-tessel_patches.o: /usr/include/sys/_types/_intptr_t.h
+-tessel_patches.o: /usr/include/sys/_types/_uintptr_t.h
+-tessel_patches.o: /usr/include/_types/_intmax_t.h
+-tessel_patches.o: /usr/include/_types/_uintmax_t.h
+-tessel_patches.o: /usr/include/sys/_types/_timeval.h
+-tessel_patches.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-tessel_patches.o: /usr/include/sys/_endian.h
+-tessel_patches.o: /usr/include/libkern/_OSByteOrder.h
+-tessel_patches.o: /usr/include/libkern/i386/_OSByteOrder.h
+-tessel_patches.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h
+-tessel_patches.o: /usr/include/sys/_types/_rune_t.h
+-tessel_patches.o: /usr/include/sys/_types/_wchar_t.h
+-tessel_patches.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-tessel_patches.o: /usr/include/sys/_types/_dev_t.h
+-tessel_patches.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h
+-tessel_patches.o: /usr/include/sys/_types/_rsize_t.h
+-tessel_patches.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-tessel_patches.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-tessel_patches.o: /usr/include/sys/_types/_fd_def.h
+-tessel_patches.o: /usr/include/sys/_types/_timespec.h
+-tessel_patches.o: /usr/include/sys/_types/_time_t.h
+-tessel_patches.o: /usr/include/sys/_types/_suseconds_t.h
+-tessel_patches.o: /usr/include/sys/_types/_fd_setsize.h
+-tessel_patches.o: /usr/include/sys/_types/_fd_set.h
+-tessel_patches.o: /usr/include/sys/_types/_fd_clr.h
+-tessel_patches.o: /usr/include/sys/_types/_fd_isset.h
+-tessel_patches.o: /usr/include/sys/_types/_fd_zero.h
+-tessel_patches.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h
+-tessel_patches.o: /usr/include/sys/_types/_clock_t.h
+-tessel_patches.o: /usr/include/sys/_select.h linalg.h
++tessel_patches.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++tessel_patches.o: /usr/include/machine/_types.h /usr/include/math.h
++tessel_patches.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++tessel_patches.o: /usr/include/string.h /usr/include/strings.h
++tessel_patches.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
++tessel_patches.o: /usr/include/sys/types.h /usr/include/machine/endian.h
++tessel_patches.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
++tessel_patches.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
++tessel_patches.o: /usr/include/time.h linalg.h
+ tessel_convex.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-tessel_convex.o: /usr/include/sys/_symbol_aliasing.h
+-tessel_convex.o: /usr/include/sys/_posix_availability.h
+-tessel_convex.o: /usr/include/Availability.h
+-tessel_convex.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-tessel_convex.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-tessel_convex.o: /usr/include/i386/_types.h
+-tessel_convex.o: /usr/include/sys/_pthread/_pthread_types.h
+-tessel_convex.o: /usr/include/sys/_types/_va_list.h
+-tessel_convex.o: /usr/include/sys/_types/_size_t.h
+-tessel_convex.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-tessel_convex.o: /usr/include/sys/_types/_off_t.h
+-tessel_convex.o: /usr/include/sys/_types/_ssize_t.h
+-tessel_convex.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-tessel_convex.o: /usr/include/math.h /usr/include/stdlib.h
+-tessel_convex.o: /usr/include/sys/wait.h /usr/include/sys/_types/_pid_t.h
+-tessel_convex.o: /usr/include/sys/_types/_id_t.h /usr/include/sys/signal.h
+-tessel_convex.o: /usr/include/sys/appleapiopts.h
+-tessel_convex.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-tessel_convex.o: /usr/include/machine/_mcontext.h
+-tessel_convex.o: /usr/include/i386/_mcontext.h
+-tessel_convex.o: /usr/include/mach/i386/_structs.h
+-tessel_convex.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-tessel_convex.o: /usr/include/sys/_types/_sigaltstack.h
+-tessel_convex.o: /usr/include/sys/_types/_ucontext.h
+-tessel_convex.o: /usr/include/sys/_types/_sigset_t.h
+-tessel_convex.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h
+-tessel_convex.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h
+-tessel_convex.o: /usr/include/sys/_types/_int16_t.h
+-tessel_convex.o: /usr/include/sys/_types/_int32_t.h
+-tessel_convex.o: /usr/include/sys/_types/_int64_t.h
+-tessel_convex.o: /usr/include/_types/_uint8_t.h
+-tessel_convex.o: /usr/include/_types/_uint16_t.h
+-tessel_convex.o: /usr/include/_types/_uint32_t.h
+-tessel_convex.o: /usr/include/_types/_uint64_t.h
+-tessel_convex.o: /usr/include/sys/_types/_intptr_t.h
+-tessel_convex.o: /usr/include/sys/_types/_uintptr_t.h
+-tessel_convex.o: /usr/include/_types/_intmax_t.h
+-tessel_convex.o: /usr/include/_types/_uintmax_t.h
+-tessel_convex.o: /usr/include/sys/_types/_timeval.h
+-tessel_convex.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-tessel_convex.o: /usr/include/sys/_endian.h
+-tessel_convex.o: /usr/include/libkern/_OSByteOrder.h
+-tessel_convex.o: /usr/include/libkern/i386/_OSByteOrder.h
+-tessel_convex.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h
+-tessel_convex.o: /usr/include/sys/_types/_rune_t.h
+-tessel_convex.o: /usr/include/sys/_types/_wchar_t.h
+-tessel_convex.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-tessel_convex.o: /usr/include/sys/_types/_dev_t.h
+-tessel_convex.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h
+-tessel_convex.o: /usr/include/sys/_types/_rsize_t.h
+-tessel_convex.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-tessel_convex.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-tessel_convex.o: /usr/include/sys/_types/_fd_def.h
+-tessel_convex.o: /usr/include/sys/_types/_timespec.h
+-tessel_convex.o: /usr/include/sys/_types/_time_t.h
+-tessel_convex.o: /usr/include/sys/_types/_suseconds_t.h
+-tessel_convex.o: /usr/include/sys/_types/_fd_setsize.h
+-tessel_convex.o: /usr/include/sys/_types/_fd_set.h
+-tessel_convex.o: /usr/include/sys/_types/_fd_clr.h
+-tessel_convex.o: /usr/include/sys/_types/_fd_isset.h
+-tessel_convex.o: /usr/include/sys/_types/_fd_zero.h
+-tessel_convex.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h
+-tessel_convex.o: /usr/include/sys/_types/_clock_t.h
+-tessel_convex.o: /usr/include/sys/_select.h linalg.h
++tessel_convex.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++tessel_convex.o: /usr/include/machine/_types.h /usr/include/math.h
++tessel_convex.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++tessel_convex.o: /usr/include/string.h /usr/include/strings.h
++tessel_convex.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
++tessel_convex.o: /usr/include/sys/types.h /usr/include/machine/endian.h
++tessel_convex.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
++tessel_convex.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
++tessel_convex.o: /usr/include/time.h linalg.h
+ tessel_concave.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-tessel_concave.o: /usr/include/sys/_symbol_aliasing.h
+-tessel_concave.o: /usr/include/sys/_posix_availability.h
+-tessel_concave.o: /usr/include/Availability.h
+-tessel_concave.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-tessel_concave.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-tessel_concave.o: /usr/include/i386/_types.h
+-tessel_concave.o: /usr/include/sys/_pthread/_pthread_types.h
+-tessel_concave.o: /usr/include/sys/_types/_va_list.h
+-tessel_concave.o: /usr/include/sys/_types/_size_t.h
+-tessel_concave.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-tessel_concave.o: /usr/include/sys/_types/_off_t.h
+-tessel_concave.o: /usr/include/sys/_types/_ssize_t.h
+-tessel_concave.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-tessel_concave.o: /usr/include/math.h /usr/include/stdlib.h
+-tessel_concave.o: /usr/include/sys/wait.h /usr/include/sys/_types/_pid_t.h
+-tessel_concave.o: /usr/include/sys/_types/_id_t.h /usr/include/sys/signal.h
+-tessel_concave.o: /usr/include/sys/appleapiopts.h
+-tessel_concave.o: /usr/include/machine/signal.h /usr/include/i386/signal.h
+-tessel_concave.o: /usr/include/machine/_mcontext.h
+-tessel_concave.o: /usr/include/i386/_mcontext.h
+-tessel_concave.o: /usr/include/mach/i386/_structs.h
+-tessel_concave.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-tessel_concave.o: /usr/include/sys/_types/_sigaltstack.h
+-tessel_concave.o: /usr/include/sys/_types/_ucontext.h
+-tessel_concave.o: /usr/include/sys/_types/_sigset_t.h
+-tessel_concave.o: /usr/include/sys/_types/_uid_t.h
+-tessel_concave.o: /usr/include/sys/resource.h /usr/include/stdint.h
+-tessel_concave.o: /usr/include/sys/_types/_int8_t.h
+-tessel_concave.o: /usr/include/sys/_types/_int16_t.h
+-tessel_concave.o: /usr/include/sys/_types/_int32_t.h
+-tessel_concave.o: /usr/include/sys/_types/_int64_t.h
+-tessel_concave.o: /usr/include/_types/_uint8_t.h
+-tessel_concave.o: /usr/include/_types/_uint16_t.h
+-tessel_concave.o: /usr/include/_types/_uint32_t.h
+-tessel_concave.o: /usr/include/_types/_uint64_t.h
+-tessel_concave.o: /usr/include/sys/_types/_intptr_t.h
+-tessel_concave.o: /usr/include/sys/_types/_uintptr_t.h
+-tessel_concave.o: /usr/include/_types/_intmax_t.h
+-tessel_concave.o: /usr/include/_types/_uintmax_t.h
+-tessel_concave.o: /usr/include/sys/_types/_timeval.h
+-tessel_concave.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-tessel_concave.o: /usr/include/sys/_endian.h
+-tessel_concave.o: /usr/include/libkern/_OSByteOrder.h
+-tessel_concave.o: /usr/include/libkern/i386/_OSByteOrder.h
+-tessel_concave.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h
+-tessel_concave.o: /usr/include/sys/_types/_rune_t.h
+-tessel_concave.o: /usr/include/sys/_types/_wchar_t.h
+-tessel_concave.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-tessel_concave.o: /usr/include/sys/_types/_dev_t.h
+-tessel_concave.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h
+-tessel_concave.o: /usr/include/sys/_types/_rsize_t.h
+-tessel_concave.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-tessel_concave.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-tessel_concave.o: /usr/include/sys/_types/_fd_def.h
+-tessel_concave.o: /usr/include/sys/_types/_timespec.h
+-tessel_concave.o: /usr/include/sys/_types/_time_t.h
+-tessel_concave.o: /usr/include/sys/_types/_suseconds_t.h
+-tessel_concave.o: /usr/include/sys/_types/_fd_setsize.h
+-tessel_concave.o: /usr/include/sys/_types/_fd_set.h
+-tessel_concave.o: /usr/include/sys/_types/_fd_clr.h
+-tessel_concave.o: /usr/include/sys/_types/_fd_isset.h
+-tessel_concave.o: /usr/include/sys/_types/_fd_zero.h
+-tessel_concave.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h
+-tessel_concave.o: /usr/include/sys/_types/_clock_t.h
+-tessel_concave.o: /usr/include/sys/_select.h linalg.h
++tessel_concave.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++tessel_concave.o: /usr/include/machine/_types.h /usr/include/math.h
++tessel_concave.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++tessel_concave.o: /usr/include/string.h /usr/include/strings.h
++tessel_concave.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
++tessel_concave.o: /usr/include/sys/types.h /usr/include/machine/endian.h
++tessel_concave.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
++tessel_concave.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
++tessel_concave.o: /usr/include/time.h linalg.h
+ tessel_torus.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
+-tessel_torus.o: /usr/include/sys/_symbol_aliasing.h
+-tessel_torus.o: /usr/include/sys/_posix_availability.h
+-tessel_torus.o: /usr/include/Availability.h
+-tessel_torus.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h
+-tessel_torus.o: /usr/include/sys/_types.h /usr/include/machine/_types.h
+-tessel_torus.o: /usr/include/i386/_types.h
+-tessel_torus.o: /usr/include/sys/_pthread/_pthread_types.h
+-tessel_torus.o: /usr/include/sys/_types/_va_list.h
+-tessel_torus.o: /usr/include/sys/_types/_size_t.h
+-tessel_torus.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h
+-tessel_torus.o: /usr/include/sys/_types/_off_t.h
+-tessel_torus.o: /usr/include/sys/_types/_ssize_t.h
+-tessel_torus.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h
+-tessel_torus.o: /usr/include/math.h /usr/include/stdlib.h
+-tessel_torus.o: /usr/include/sys/wait.h /usr/include/sys/_types/_pid_t.h
+-tessel_torus.o: /usr/include/sys/_types/_id_t.h /usr/include/sys/signal.h
+-tessel_torus.o: /usr/include/sys/appleapiopts.h /usr/include/machine/signal.h
+-tessel_torus.o: /usr/include/i386/signal.h /usr/include/machine/_mcontext.h
+-tessel_torus.o: /usr/include/i386/_mcontext.h
+-tessel_torus.o: /usr/include/mach/i386/_structs.h
+-tessel_torus.o: /usr/include/sys/_pthread/_pthread_attr_t.h
+-tessel_torus.o: /usr/include/sys/_types/_sigaltstack.h
+-tessel_torus.o: /usr/include/sys/_types/_ucontext.h
+-tessel_torus.o: /usr/include/sys/_types/_sigset_t.h
+-tessel_torus.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h
+-tessel_torus.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h
+-tessel_torus.o: /usr/include/sys/_types/_int16_t.h
+-tessel_torus.o: /usr/include/sys/_types/_int32_t.h
+-tessel_torus.o: /usr/include/sys/_types/_int64_t.h
+-tessel_torus.o: /usr/include/_types/_uint8_t.h
+-tessel_torus.o: /usr/include/_types/_uint16_t.h
+-tessel_torus.o: /usr/include/_types/_uint32_t.h
+-tessel_torus.o: /usr/include/_types/_uint64_t.h
+-tessel_torus.o: /usr/include/sys/_types/_intptr_t.h
+-tessel_torus.o: /usr/include/sys/_types/_uintptr_t.h
+-tessel_torus.o: /usr/include/_types/_intmax_t.h
+-tessel_torus.o: /usr/include/_types/_uintmax_t.h
+-tessel_torus.o: /usr/include/sys/_types/_timeval.h
+-tessel_torus.o: /usr/include/machine/endian.h /usr/include/i386/endian.h
+-tessel_torus.o: /usr/include/sys/_endian.h
+-tessel_torus.o: /usr/include/libkern/_OSByteOrder.h
+-tessel_torus.o: /usr/include/libkern/i386/_OSByteOrder.h
+-tessel_torus.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h
+-tessel_torus.o: /usr/include/sys/_types/_rune_t.h
+-tessel_torus.o: /usr/include/sys/_types/_wchar_t.h
+-tessel_torus.o: /usr/include/machine/types.h /usr/include/i386/types.h
+-tessel_torus.o: /usr/include/sys/_types/_dev_t.h
+-tessel_torus.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h
+-tessel_torus.o: /usr/include/sys/_types/_rsize_t.h
+-tessel_torus.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h
+-tessel_torus.o: /usr/include/secure/_string.h /usr/include/sys/time.h
+-tessel_torus.o: /usr/include/sys/_types/_fd_def.h
+-tessel_torus.o: /usr/include/sys/_types/_timespec.h
+-tessel_torus.o: /usr/include/sys/_types/_time_t.h
+-tessel_torus.o: /usr/include/sys/_types/_suseconds_t.h
+-tessel_torus.o: /usr/include/sys/_types/_fd_setsize.h
+-tessel_torus.o: /usr/include/sys/_types/_fd_set.h
+-tessel_torus.o: /usr/include/sys/_types/_fd_clr.h
+-tessel_torus.o: /usr/include/sys/_types/_fd_isset.h
+-tessel_torus.o: /usr/include/sys/_types/_fd_zero.h
+-tessel_torus.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h
+-tessel_torus.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h
+-tessel_torus.o: linalg.h
+-  
+-# DEPENDENCIES MUST END AT END OF FILE
+-# IF YOU PUT STUFF HERE IT WILL GO AWAY
+-# see make depend above
+-  
++tessel_torus.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
++tessel_torus.o: /usr/include/machine/_types.h /usr/include/math.h
++tessel_torus.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
++tessel_torus.o: /usr/include/string.h /usr/include/strings.h
++tessel_torus.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
++tessel_torus.o: /usr/include/sys/types.h /usr/include/machine/endian.h
++tessel_torus.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
++tessel_torus.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
++tessel_torus.o: /usr/include/time.h linalg.h
diff --git a/biology/molden/files/patch-surf-makefile b/biology/molden/files/patch-surf-makefile
deleted file mode 100644
index 56b421c1ea4c..000000000000
--- a/biology/molden/files/patch-surf-makefile
+++ /dev/null
@@ -1,181 +0,0 @@
---- surf/Makefile.orig	2008-08-26 02:59:06.000000000 +0900
-+++ surf/Makefile	2012-09-24 02:45:55.000000000 +0900
-@@ -1,12 +1,12 @@
- # Compilation flags
- #CC	    = cc
--CC	    = cc
-+#CC	    = cc
- INCLUDE     = -I. 
- #LINCLUDE    = -lcurses -ltermcap -lm
- LINCLUDE    = -lm
--OPT_CFLAGS  = -O2 $(FLAGS) $(INCLUDE)
-+#OPT_CFLAGS  = -O2 $(FLAGS) $(INCLUDE)
- #CFLAGS	    = -g $(FLAGS) $(INCLUDE)
--CFLAGS	    = -O2 $(FLAGS) $(INCLUDE)
-+#CFLAGS	    = -O2 $(FLAGS) $(INCLUDE)
- 
- # These are the user object files in the application
- SRCS        = surf.c io.c compute.c dual.c utils.c lp.c chull.c tessel_cases.c \
-@@ -63,46 +63,120 @@
- # DO NOT DELETE THIS LINE -- make depend depends on it.
-   
-  
--# DO NOT DELETE THIS LINE -- make depend depends on it.
-+# DO NOT DELETE
- 
--surf.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h
--surf.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h
--surf.o: linalg.h
--io.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h
--io.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h
--io.o: linalg.h
--compute.o: surf.h /usr/include/stdio.h /usr/include/math.h
--compute.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h
--compute.o: /usr/include/sys/time.h linalg.h chull.h dual.h
--dual.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h
--dual.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h
--dual.o: linalg.h dual.h chull.h
--utils.o: surf.h /usr/include/stdio.h /usr/include/math.h
--utils.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h
--utils.o: /usr/include/sys/time.h linalg.h
--lp.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h
--lp.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h
--lp.o: linalg.h
--chull.o: surf.h /usr/include/stdio.h /usr/include/math.h
--chull.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h
--chull.o: /usr/include/sys/time.h linalg.h chull.h
--tessel_cases.o: surf.h /usr/include/stdio.h /usr/include/math.h
--tessel_cases.o: /usr/include/stdlib.h /usr/include/sgidefs.h
--tessel_cases.o: /usr/include/string.h /usr/include/sys/time.h linalg.h dual.h
--tessel_patches.o: surf.h /usr/include/stdio.h /usr/include/math.h
--tessel_patches.o: /usr/include/stdlib.h /usr/include/sgidefs.h
--tessel_patches.o: /usr/include/string.h /usr/include/sys/time.h linalg.h
--tessel_convex.o: surf.h /usr/include/stdio.h /usr/include/math.h
--tessel_convex.o: /usr/include/stdlib.h /usr/include/sgidefs.h
--tessel_convex.o: /usr/include/string.h /usr/include/sys/time.h linalg.h
--tessel_concave.o: surf.h /usr/include/stdio.h /usr/include/math.h
--tessel_concave.o: /usr/include/stdlib.h /usr/include/sgidefs.h
--tessel_concave.o: /usr/include/string.h /usr/include/sys/time.h linalg.h
--tessel_torus.o: surf.h /usr/include/stdio.h /usr/include/math.h
--tessel_torus.o: /usr/include/stdlib.h /usr/include/sgidefs.h
--tessel_torus.o: /usr/include/string.h /usr/include/sys/time.h linalg.h
--  
--# DEPENDENCIES MUST END AT END OF FILE
--# IF YOU PUT STUFF HERE IT WILL GO AWAY
--# see make depend above
--  
-+surf.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+surf.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+surf.o: /usr/include/machine/_types.h /usr/include/math.h
-+surf.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+surf.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
-+surf.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
-+surf.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
-+surf.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
-+surf.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h
-+io.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+io.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+io.o: /usr/include/machine/_types.h /usr/include/math.h
-+io.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+io.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
-+io.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
-+io.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
-+io.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
-+io.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h
-+compute.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+compute.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+compute.o: /usr/include/machine/_types.h /usr/include/math.h
-+compute.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+compute.o: /usr/include/string.h /usr/include/strings.h
-+compute.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
-+compute.o: /usr/include/sys/types.h /usr/include/machine/endian.h
-+compute.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
-+compute.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
-+compute.o: /usr/include/time.h linalg.h chull.h dual.h
-+dual.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+dual.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+dual.o: /usr/include/machine/_types.h /usr/include/math.h
-+dual.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+dual.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
-+dual.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
-+dual.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
-+dual.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
-+dual.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h dual.h
-+dual.o: chull.h
-+utils.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+utils.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+utils.o: /usr/include/machine/_types.h /usr/include/math.h
-+utils.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+utils.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
-+utils.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
-+utils.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
-+utils.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
-+utils.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h
-+lp.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+lp.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+lp.o: /usr/include/machine/_types.h /usr/include/math.h
-+lp.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+lp.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
-+lp.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
-+lp.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
-+lp.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
-+lp.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h
-+chull.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+chull.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+chull.o: /usr/include/machine/_types.h /usr/include/math.h
-+chull.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+chull.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h
-+chull.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h
-+chull.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h
-+chull.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h
-+chull.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h chull.h
-+tessel_cases.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+tessel_cases.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+tessel_cases.o: /usr/include/machine/_types.h /usr/include/math.h
-+tessel_cases.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+tessel_cases.o: /usr/include/string.h /usr/include/strings.h
-+tessel_cases.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
-+tessel_cases.o: /usr/include/sys/types.h /usr/include/machine/endian.h
-+tessel_cases.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
-+tessel_cases.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
-+tessel_cases.o: /usr/include/time.h linalg.h dual.h
-+tessel_patches.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+tessel_patches.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+tessel_patches.o: /usr/include/machine/_types.h /usr/include/math.h
-+tessel_patches.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+tessel_patches.o: /usr/include/string.h /usr/include/strings.h
-+tessel_patches.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
-+tessel_patches.o: /usr/include/sys/types.h /usr/include/machine/endian.h
-+tessel_patches.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
-+tessel_patches.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
-+tessel_patches.o: /usr/include/time.h linalg.h
-+tessel_convex.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+tessel_convex.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+tessel_convex.o: /usr/include/machine/_types.h /usr/include/math.h
-+tessel_convex.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+tessel_convex.o: /usr/include/string.h /usr/include/strings.h
-+tessel_convex.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
-+tessel_convex.o: /usr/include/sys/types.h /usr/include/machine/endian.h
-+tessel_convex.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
-+tessel_convex.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
-+tessel_convex.o: /usr/include/time.h linalg.h
-+tessel_concave.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+tessel_concave.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+tessel_concave.o: /usr/include/machine/_types.h /usr/include/math.h
-+tessel_concave.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+tessel_concave.o: /usr/include/string.h /usr/include/strings.h
-+tessel_concave.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
-+tessel_concave.o: /usr/include/sys/types.h /usr/include/machine/endian.h
-+tessel_concave.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
-+tessel_concave.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
-+tessel_concave.o: /usr/include/time.h linalg.h
-+tessel_torus.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h
-+tessel_torus.o: /usr/include/sys/_null.h /usr/include/sys/_types.h
-+tessel_torus.o: /usr/include/machine/_types.h /usr/include/math.h
-+tessel_torus.o: /usr/include/machine/_limits.h /usr/include/stdlib.h
-+tessel_torus.o: /usr/include/string.h /usr/include/strings.h
-+tessel_torus.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h
-+tessel_torus.o: /usr/include/sys/types.h /usr/include/machine/endian.h
-+tessel_torus.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h
-+tessel_torus.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h
-+tessel_torus.o: /usr/include/time.h linalg.h