From d997d5694162454790560784b3025880c852a57f Mon Sep 17 00:00:00 2001 From: Kurt Jaeger Date: Mon, 18 Jan 2016 19:32:37 +0000 Subject: biology/molden: 5.0.7 -> 5.4 Changes: - Missing hydrogens atoms of HETATM molecules (pdb files) are stored locally. - Pdb files can now be clipped. - Fixes missing residues. Introduces an alternative way of generating rotamers, without using z-matrices. This potentially a faster algorithm. - Supports Movie making through avconv/ffmpeg. - calculates the Electron Localization Function (ELF). - Updated code of ambfor/ambmd to speed up optimisations/MD of proteins solvated in water (Jan, 2014). PR: 204341 --- biology/molden/Makefile | 5 +- biology/molden/distinfo | 4 +- biology/molden/files/patch-ambfor-makefile | 12 +- biology/molden/files/patch-surf-Makefile | 789 +++++++++++++++++++++++++++++ biology/molden/files/patch-surf-makefile | 181 ------- 5 files changed, 799 insertions(+), 192 deletions(-) create mode 100644 biology/molden/files/patch-surf-Makefile delete mode 100644 biology/molden/files/patch-surf-makefile (limited to 'biology/molden') diff --git a/biology/molden/Makefile b/biology/molden/Makefile index 832b597c5c5a..c8519bd4add1 100644 --- a/biology/molden/Makefile +++ b/biology/molden/Makefile @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= molden -PORTVERSION= 5.0.7 -PORTREVISION= 2 +PORTVERSION= 5.4 PORTEPOCH= 1 CATEGORIES= biology MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/ @@ -14,7 +13,7 @@ COMMENT= Display molecular orbitals and electron densities in 2D and 3D RESTRICTED= free for academic, non profit usage; do not re-distribute source and executable. -WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION:R} +WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION} USES= fortran gmake USE_XORG= x11 diff --git a/biology/molden/distinfo b/biology/molden/distinfo index 32892d7bfcaa..3feb2b1ebd3c 100644 --- a/biology/molden/distinfo +++ b/biology/molden/distinfo @@ -1,2 +1,2 @@ -SHA256 (molden5.0.7.tar.gz) = e46bd783acdb27277731afd0693681dab91f0af4f281be2ce2d83777038ba62e -SIZE (molden5.0.7.tar.gz) = 3076093 +SHA256 (molden5.4.tar.gz) = c73bb678a97598cd41ff568f49f276e555302b98144c9679b59e6d0eadf4669b +SIZE (molden5.4.tar.gz) = 4914556 diff --git a/biology/molden/files/patch-ambfor-makefile b/biology/molden/files/patch-ambfor-makefile index 4ac7d7be5838..5b71286b335f 100644 --- a/biology/molden/files/patch-ambfor-makefile +++ b/biology/molden/files/patch-ambfor-makefile @@ -1,10 +1,10 @@ ---- ambfor/makefile.orig 2011-04-29 20:40:50.000000000 +0900 -+++ ambfor/makefile 2012-09-24 02:50:23.000000000 +0900 +--- ambfor/makefile.orig 2015-05-02 19:49:10 UTC ++++ ambfor/makefile @@ -12,12 +12,12 @@ # # --CFLAGS = -c -g +-CFLAGS = -c -g ${EXT} +CFLAGS += -c #FC = g77 -FC = gfortran @@ -14,10 +14,10 @@ LIBS = -lm -LDR = ${FC} -g +LDR = ${FC} + EXT := - OBJS = angle.o bond.o charge.o conn.o enegrd.o getinp.o param.o \ - tors.o vdwlj.o math.o switch.o wrtout.o pbc.o -@@ -47,7 +47,7 @@ + ifeq ($(uname), Darwin) +@@ -56,7 +56,7 @@ ambmd: md.o verlet.o qvdw.o allocmd.o $( $(LDR) -o ambmd md.o verlet.o qvdw.o allocmd.o $(OBJS) $(LIBS) ambfor.o: ambfor.f diff --git a/biology/molden/files/patch-surf-Makefile b/biology/molden/files/patch-surf-Makefile new file mode 100644 index 000000000000..94b6eea01746 --- /dev/null +++ b/biology/molden/files/patch-surf-Makefile @@ -0,0 +1,789 @@ +--- surf/Makefile.orig 2015-05-02 19:48:48 UTC ++++ surf/Makefile +@@ -1,12 +1,8 @@ + # Compilation flags +-#CC = cc +-CC = cc + INCLUDE = -I. + #LINCLUDE = -lcurses -ltermcap -lm + LINCLUDE = -lm +-OPT_CFLAGS = -O2 $(FLAGS) $(INCLUDE) + #CFLAGS = -g $(FLAGS) $(INCLUDE) +-CFLAGS = -O2 $(FLAGS) $(INCLUDE) ${EXT} + + ifeq ($(uname), Darwin) + # +@@ -73,670 +69,117 @@ depend: $(DEPEND) + # DO NOT DELETE + + surf.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h +-surf.o: /usr/include/sys/_symbol_aliasing.h +-surf.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h +-surf.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h +-surf.o: /usr/include/sys/_types.h /usr/include/machine/_types.h +-surf.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h +-surf.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h +-surf.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h +-surf.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h +-surf.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h +-surf.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h +-surf.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h +-surf.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h +-surf.o: /usr/include/machine/signal.h /usr/include/i386/signal.h +-surf.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h +-surf.o: /usr/include/mach/i386/_structs.h +-surf.o: /usr/include/sys/_pthread/_pthread_attr_t.h +-surf.o: /usr/include/sys/_types/_sigaltstack.h +-surf.o: /usr/include/sys/_types/_ucontext.h +-surf.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h +-surf.o: /usr/include/sys/resource.h /usr/include/stdint.h +-surf.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h +-surf.o: /usr/include/sys/_types/_int32_t.h /usr/include/sys/_types/_int64_t.h +-surf.o: /usr/include/_types/_uint8_t.h /usr/include/_types/_uint16_t.h +-surf.o: /usr/include/_types/_uint32_t.h /usr/include/_types/_uint64_t.h +-surf.o: /usr/include/sys/_types/_intptr_t.h +-surf.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h +-surf.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h +-surf.o: /usr/include/machine/endian.h /usr/include/i386/endian.h +-surf.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h +-surf.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h +-surf.o: /usr/include/sys/_types/_ct_rune_t.h +-surf.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h +-surf.o: /usr/include/machine/types.h /usr/include/i386/types.h +-surf.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h +-surf.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h +-surf.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h +-surf.o: /usr/include/secure/_string.h /usr/include/sys/time.h +-surf.o: /usr/include/sys/_types/_fd_def.h /usr/include/sys/_types/_timespec.h +-surf.o: /usr/include/sys/_types/_time_t.h +-surf.o: /usr/include/sys/_types/_suseconds_t.h +-surf.o: /usr/include/sys/_types/_fd_setsize.h +-surf.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h +-surf.o: /usr/include/sys/_types/_fd_isset.h +-surf.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h +-surf.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h +-surf.o: /usr/include/sys/_select.h linalg.h ++surf.o: /usr/include/sys/_null.h /usr/include/sys/_types.h ++surf.o: /usr/include/machine/_types.h /usr/include/math.h ++surf.o: /usr/include/machine/_limits.h /usr/include/stdlib.h ++surf.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h ++surf.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h ++surf.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h ++surf.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h ++surf.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h + io.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h +-io.o: /usr/include/sys/_symbol_aliasing.h +-io.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h +-io.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h +-io.o: /usr/include/sys/_types.h /usr/include/machine/_types.h +-io.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h +-io.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h +-io.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h +-io.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h +-io.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h +-io.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h +-io.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h +-io.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h +-io.o: /usr/include/machine/signal.h /usr/include/i386/signal.h +-io.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h +-io.o: /usr/include/mach/i386/_structs.h +-io.o: /usr/include/sys/_pthread/_pthread_attr_t.h +-io.o: /usr/include/sys/_types/_sigaltstack.h +-io.o: /usr/include/sys/_types/_ucontext.h /usr/include/sys/_types/_sigset_t.h +-io.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h +-io.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h +-io.o: /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h +-io.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h +-io.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h +-io.o: /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h +-io.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h +-io.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h +-io.o: /usr/include/machine/endian.h /usr/include/i386/endian.h +-io.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h +-io.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h +-io.o: /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h +-io.o: /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h +-io.o: /usr/include/i386/types.h /usr/include/sys/_types/_dev_t.h +-io.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h +-io.o: /usr/include/sys/_types/_rsize_t.h /usr/include/sys/_types/_errno_t.h +-io.o: /usr/include/strings.h /usr/include/secure/_string.h +-io.o: /usr/include/sys/time.h /usr/include/sys/_types/_fd_def.h +-io.o: /usr/include/sys/_types/_timespec.h /usr/include/sys/_types/_time_t.h +-io.o: /usr/include/sys/_types/_suseconds_t.h +-io.o: /usr/include/sys/_types/_fd_setsize.h /usr/include/sys/_types/_fd_set.h +-io.o: /usr/include/sys/_types/_fd_clr.h /usr/include/sys/_types/_fd_isset.h +-io.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h +-io.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h +-io.o: /usr/include/sys/_select.h linalg.h ++io.o: /usr/include/sys/_null.h /usr/include/sys/_types.h ++io.o: /usr/include/machine/_types.h /usr/include/math.h ++io.o: /usr/include/machine/_limits.h /usr/include/stdlib.h ++io.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h ++io.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h ++io.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h ++io.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h ++io.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h + compute.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h +-compute.o: /usr/include/sys/_symbol_aliasing.h +-compute.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h +-compute.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h +-compute.o: /usr/include/sys/_types.h /usr/include/machine/_types.h +-compute.o: /usr/include/i386/_types.h +-compute.o: /usr/include/sys/_pthread/_pthread_types.h +-compute.o: /usr/include/sys/_types/_va_list.h +-compute.o: /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h +-compute.o: /usr/include/sys/stdio.h /usr/include/sys/_types/_off_t.h +-compute.o: /usr/include/sys/_types/_ssize_t.h /usr/include/secure/_stdio.h +-compute.o: /usr/include/secure/_common.h /usr/include/math.h +-compute.o: /usr/include/stdlib.h /usr/include/sys/wait.h +-compute.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h +-compute.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h +-compute.o: /usr/include/machine/signal.h /usr/include/i386/signal.h +-compute.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h +-compute.o: /usr/include/mach/i386/_structs.h +-compute.o: /usr/include/sys/_pthread/_pthread_attr_t.h +-compute.o: /usr/include/sys/_types/_sigaltstack.h +-compute.o: /usr/include/sys/_types/_ucontext.h +-compute.o: /usr/include/sys/_types/_sigset_t.h +-compute.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h +-compute.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h +-compute.o: /usr/include/sys/_types/_int16_t.h +-compute.o: /usr/include/sys/_types/_int32_t.h +-compute.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h +-compute.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h +-compute.o: /usr/include/_types/_uint64_t.h +-compute.o: /usr/include/sys/_types/_intptr_t.h +-compute.o: /usr/include/sys/_types/_uintptr_t.h +-compute.o: /usr/include/_types/_intmax_t.h /usr/include/_types/_uintmax_t.h +-compute.o: /usr/include/sys/_types/_timeval.h /usr/include/machine/endian.h +-compute.o: /usr/include/i386/endian.h /usr/include/sys/_endian.h +-compute.o: /usr/include/libkern/_OSByteOrder.h +-compute.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h +-compute.o: /usr/include/sys/_types/_ct_rune_t.h +-compute.o: /usr/include/sys/_types/_rune_t.h +-compute.o: /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h +-compute.o: /usr/include/i386/types.h /usr/include/sys/_types/_dev_t.h +-compute.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h +-compute.o: /usr/include/sys/_types/_rsize_t.h +-compute.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h +-compute.o: /usr/include/secure/_string.h /usr/include/sys/time.h +-compute.o: /usr/include/sys/_types/_fd_def.h +-compute.o: /usr/include/sys/_types/_timespec.h +-compute.o: /usr/include/sys/_types/_time_t.h +-compute.o: /usr/include/sys/_types/_suseconds_t.h +-compute.o: /usr/include/sys/_types/_fd_setsize.h +-compute.o: /usr/include/sys/_types/_fd_set.h +-compute.o: /usr/include/sys/_types/_fd_clr.h +-compute.o: /usr/include/sys/_types/_fd_isset.h +-compute.o: /usr/include/sys/_types/_fd_zero.h +-compute.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h +-compute.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h +-compute.o: linalg.h chull.h dual.h ++compute.o: /usr/include/sys/_null.h /usr/include/sys/_types.h ++compute.o: /usr/include/machine/_types.h /usr/include/math.h ++compute.o: /usr/include/machine/_limits.h /usr/include/stdlib.h ++compute.o: /usr/include/string.h /usr/include/strings.h ++compute.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h ++compute.o: /usr/include/sys/types.h /usr/include/machine/endian.h ++compute.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h ++compute.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h ++compute.o: /usr/include/time.h linalg.h chull.h dual.h + dual.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h +-dual.o: /usr/include/sys/_symbol_aliasing.h +-dual.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h +-dual.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h +-dual.o: /usr/include/sys/_types.h /usr/include/machine/_types.h +-dual.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h +-dual.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h +-dual.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h +-dual.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h +-dual.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h +-dual.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h +-dual.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h +-dual.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h +-dual.o: /usr/include/machine/signal.h /usr/include/i386/signal.h +-dual.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h +-dual.o: /usr/include/mach/i386/_structs.h +-dual.o: /usr/include/sys/_pthread/_pthread_attr_t.h +-dual.o: /usr/include/sys/_types/_sigaltstack.h +-dual.o: /usr/include/sys/_types/_ucontext.h +-dual.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h +-dual.o: /usr/include/sys/resource.h /usr/include/stdint.h +-dual.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h +-dual.o: /usr/include/sys/_types/_int32_t.h /usr/include/sys/_types/_int64_t.h +-dual.o: /usr/include/_types/_uint8_t.h /usr/include/_types/_uint16_t.h +-dual.o: /usr/include/_types/_uint32_t.h /usr/include/_types/_uint64_t.h +-dual.o: /usr/include/sys/_types/_intptr_t.h +-dual.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h +-dual.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h +-dual.o: /usr/include/machine/endian.h /usr/include/i386/endian.h +-dual.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h +-dual.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h +-dual.o: /usr/include/sys/_types/_ct_rune_t.h +-dual.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h +-dual.o: /usr/include/machine/types.h /usr/include/i386/types.h +-dual.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h +-dual.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h +-dual.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h +-dual.o: /usr/include/secure/_string.h /usr/include/sys/time.h +-dual.o: /usr/include/sys/_types/_fd_def.h /usr/include/sys/_types/_timespec.h +-dual.o: /usr/include/sys/_types/_time_t.h +-dual.o: /usr/include/sys/_types/_suseconds_t.h +-dual.o: /usr/include/sys/_types/_fd_setsize.h +-dual.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h +-dual.o: /usr/include/sys/_types/_fd_isset.h +-dual.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h +-dual.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h +-dual.o: /usr/include/sys/_select.h linalg.h dual.h chull.h ++dual.o: /usr/include/sys/_null.h /usr/include/sys/_types.h ++dual.o: /usr/include/machine/_types.h /usr/include/math.h ++dual.o: /usr/include/machine/_limits.h /usr/include/stdlib.h ++dual.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h ++dual.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h ++dual.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h ++dual.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h ++dual.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h dual.h ++dual.o: chull.h + utils.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h +-utils.o: /usr/include/sys/_symbol_aliasing.h +-utils.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h +-utils.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h +-utils.o: /usr/include/sys/_types.h /usr/include/machine/_types.h +-utils.o: /usr/include/i386/_types.h +-utils.o: /usr/include/sys/_pthread/_pthread_types.h +-utils.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h +-utils.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h +-utils.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h +-utils.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h +-utils.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h +-utils.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h +-utils.o: 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/usr/include/sys/_types/_uintptr_t.h +-tessel_patches.o: /usr/include/_types/_intmax_t.h +-tessel_patches.o: /usr/include/_types/_uintmax_t.h +-tessel_patches.o: /usr/include/sys/_types/_timeval.h +-tessel_patches.o: /usr/include/machine/endian.h /usr/include/i386/endian.h +-tessel_patches.o: /usr/include/sys/_endian.h +-tessel_patches.o: /usr/include/libkern/_OSByteOrder.h +-tessel_patches.o: /usr/include/libkern/i386/_OSByteOrder.h +-tessel_patches.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h +-tessel_patches.o: /usr/include/sys/_types/_rune_t.h +-tessel_patches.o: /usr/include/sys/_types/_wchar_t.h +-tessel_patches.o: /usr/include/machine/types.h /usr/include/i386/types.h +-tessel_patches.o: /usr/include/sys/_types/_dev_t.h +-tessel_patches.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h +-tessel_patches.o: /usr/include/sys/_types/_rsize_t.h +-tessel_patches.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h +-tessel_patches.o: /usr/include/secure/_string.h /usr/include/sys/time.h +-tessel_patches.o: /usr/include/sys/_types/_fd_def.h +-tessel_patches.o: /usr/include/sys/_types/_timespec.h +-tessel_patches.o: /usr/include/sys/_types/_time_t.h +-tessel_patches.o: /usr/include/sys/_types/_suseconds_t.h +-tessel_patches.o: /usr/include/sys/_types/_fd_setsize.h +-tessel_patches.o: /usr/include/sys/_types/_fd_set.h +-tessel_patches.o: /usr/include/sys/_types/_fd_clr.h +-tessel_patches.o: /usr/include/sys/_types/_fd_isset.h +-tessel_patches.o: /usr/include/sys/_types/_fd_zero.h +-tessel_patches.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h +-tessel_patches.o: /usr/include/sys/_types/_clock_t.h +-tessel_patches.o: /usr/include/sys/_select.h linalg.h ++tessel_patches.o: /usr/include/sys/_null.h /usr/include/sys/_types.h ++tessel_patches.o: /usr/include/machine/_types.h /usr/include/math.h ++tessel_patches.o: /usr/include/machine/_limits.h /usr/include/stdlib.h ++tessel_patches.o: /usr/include/string.h /usr/include/strings.h ++tessel_patches.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h ++tessel_patches.o: /usr/include/sys/types.h /usr/include/machine/endian.h ++tessel_patches.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h ++tessel_patches.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h ++tessel_patches.o: /usr/include/time.h linalg.h + tessel_convex.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h +-tessel_convex.o: /usr/include/sys/_symbol_aliasing.h +-tessel_convex.o: /usr/include/sys/_posix_availability.h +-tessel_convex.o: /usr/include/Availability.h +-tessel_convex.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h +-tessel_convex.o: /usr/include/sys/_types.h /usr/include/machine/_types.h +-tessel_convex.o: /usr/include/i386/_types.h +-tessel_convex.o: /usr/include/sys/_pthread/_pthread_types.h +-tessel_convex.o: /usr/include/sys/_types/_va_list.h +-tessel_convex.o: /usr/include/sys/_types/_size_t.h +-tessel_convex.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h +-tessel_convex.o: /usr/include/sys/_types/_off_t.h +-tessel_convex.o: /usr/include/sys/_types/_ssize_t.h +-tessel_convex.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h +-tessel_convex.o: /usr/include/math.h /usr/include/stdlib.h +-tessel_convex.o: /usr/include/sys/wait.h /usr/include/sys/_types/_pid_t.h +-tessel_convex.o: /usr/include/sys/_types/_id_t.h /usr/include/sys/signal.h +-tessel_convex.o: /usr/include/sys/appleapiopts.h +-tessel_convex.o: /usr/include/machine/signal.h /usr/include/i386/signal.h +-tessel_convex.o: /usr/include/machine/_mcontext.h +-tessel_convex.o: /usr/include/i386/_mcontext.h +-tessel_convex.o: /usr/include/mach/i386/_structs.h +-tessel_convex.o: /usr/include/sys/_pthread/_pthread_attr_t.h +-tessel_convex.o: /usr/include/sys/_types/_sigaltstack.h +-tessel_convex.o: /usr/include/sys/_types/_ucontext.h +-tessel_convex.o: /usr/include/sys/_types/_sigset_t.h +-tessel_convex.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h +-tessel_convex.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h +-tessel_convex.o: /usr/include/sys/_types/_int16_t.h +-tessel_convex.o: /usr/include/sys/_types/_int32_t.h +-tessel_convex.o: /usr/include/sys/_types/_int64_t.h +-tessel_convex.o: /usr/include/_types/_uint8_t.h +-tessel_convex.o: /usr/include/_types/_uint16_t.h +-tessel_convex.o: /usr/include/_types/_uint32_t.h +-tessel_convex.o: /usr/include/_types/_uint64_t.h +-tessel_convex.o: /usr/include/sys/_types/_intptr_t.h +-tessel_convex.o: /usr/include/sys/_types/_uintptr_t.h +-tessel_convex.o: /usr/include/_types/_intmax_t.h +-tessel_convex.o: /usr/include/_types/_uintmax_t.h +-tessel_convex.o: /usr/include/sys/_types/_timeval.h +-tessel_convex.o: /usr/include/machine/endian.h /usr/include/i386/endian.h +-tessel_convex.o: /usr/include/sys/_endian.h +-tessel_convex.o: /usr/include/libkern/_OSByteOrder.h +-tessel_convex.o: /usr/include/libkern/i386/_OSByteOrder.h +-tessel_convex.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h +-tessel_convex.o: /usr/include/sys/_types/_rune_t.h +-tessel_convex.o: /usr/include/sys/_types/_wchar_t.h +-tessel_convex.o: /usr/include/machine/types.h /usr/include/i386/types.h +-tessel_convex.o: /usr/include/sys/_types/_dev_t.h +-tessel_convex.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h +-tessel_convex.o: /usr/include/sys/_types/_rsize_t.h +-tessel_convex.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h +-tessel_convex.o: /usr/include/secure/_string.h /usr/include/sys/time.h +-tessel_convex.o: /usr/include/sys/_types/_fd_def.h +-tessel_convex.o: /usr/include/sys/_types/_timespec.h +-tessel_convex.o: /usr/include/sys/_types/_time_t.h +-tessel_convex.o: /usr/include/sys/_types/_suseconds_t.h +-tessel_convex.o: /usr/include/sys/_types/_fd_setsize.h +-tessel_convex.o: /usr/include/sys/_types/_fd_set.h +-tessel_convex.o: /usr/include/sys/_types/_fd_clr.h +-tessel_convex.o: /usr/include/sys/_types/_fd_isset.h +-tessel_convex.o: /usr/include/sys/_types/_fd_zero.h +-tessel_convex.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h +-tessel_convex.o: /usr/include/sys/_types/_clock_t.h +-tessel_convex.o: /usr/include/sys/_select.h linalg.h ++tessel_convex.o: /usr/include/sys/_null.h /usr/include/sys/_types.h ++tessel_convex.o: /usr/include/machine/_types.h /usr/include/math.h ++tessel_convex.o: /usr/include/machine/_limits.h /usr/include/stdlib.h ++tessel_convex.o: /usr/include/string.h /usr/include/strings.h ++tessel_convex.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h ++tessel_convex.o: /usr/include/sys/types.h /usr/include/machine/endian.h ++tessel_convex.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h ++tessel_convex.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h ++tessel_convex.o: /usr/include/time.h linalg.h + tessel_concave.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h +-tessel_concave.o: /usr/include/sys/_symbol_aliasing.h +-tessel_concave.o: /usr/include/sys/_posix_availability.h +-tessel_concave.o: /usr/include/Availability.h +-tessel_concave.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h +-tessel_concave.o: /usr/include/sys/_types.h /usr/include/machine/_types.h +-tessel_concave.o: /usr/include/i386/_types.h +-tessel_concave.o: /usr/include/sys/_pthread/_pthread_types.h +-tessel_concave.o: /usr/include/sys/_types/_va_list.h +-tessel_concave.o: /usr/include/sys/_types/_size_t.h +-tessel_concave.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h +-tessel_concave.o: /usr/include/sys/_types/_off_t.h +-tessel_concave.o: /usr/include/sys/_types/_ssize_t.h +-tessel_concave.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h +-tessel_concave.o: /usr/include/math.h /usr/include/stdlib.h +-tessel_concave.o: /usr/include/sys/wait.h /usr/include/sys/_types/_pid_t.h +-tessel_concave.o: /usr/include/sys/_types/_id_t.h /usr/include/sys/signal.h +-tessel_concave.o: /usr/include/sys/appleapiopts.h +-tessel_concave.o: /usr/include/machine/signal.h /usr/include/i386/signal.h +-tessel_concave.o: /usr/include/machine/_mcontext.h +-tessel_concave.o: /usr/include/i386/_mcontext.h +-tessel_concave.o: /usr/include/mach/i386/_structs.h +-tessel_concave.o: /usr/include/sys/_pthread/_pthread_attr_t.h +-tessel_concave.o: /usr/include/sys/_types/_sigaltstack.h +-tessel_concave.o: /usr/include/sys/_types/_ucontext.h +-tessel_concave.o: /usr/include/sys/_types/_sigset_t.h +-tessel_concave.o: /usr/include/sys/_types/_uid_t.h +-tessel_concave.o: /usr/include/sys/resource.h /usr/include/stdint.h +-tessel_concave.o: /usr/include/sys/_types/_int8_t.h +-tessel_concave.o: /usr/include/sys/_types/_int16_t.h +-tessel_concave.o: /usr/include/sys/_types/_int32_t.h +-tessel_concave.o: /usr/include/sys/_types/_int64_t.h +-tessel_concave.o: /usr/include/_types/_uint8_t.h +-tessel_concave.o: /usr/include/_types/_uint16_t.h +-tessel_concave.o: /usr/include/_types/_uint32_t.h +-tessel_concave.o: /usr/include/_types/_uint64_t.h +-tessel_concave.o: /usr/include/sys/_types/_intptr_t.h +-tessel_concave.o: /usr/include/sys/_types/_uintptr_t.h +-tessel_concave.o: /usr/include/_types/_intmax_t.h +-tessel_concave.o: /usr/include/_types/_uintmax_t.h +-tessel_concave.o: /usr/include/sys/_types/_timeval.h +-tessel_concave.o: /usr/include/machine/endian.h /usr/include/i386/endian.h +-tessel_concave.o: /usr/include/sys/_endian.h +-tessel_concave.o: /usr/include/libkern/_OSByteOrder.h +-tessel_concave.o: /usr/include/libkern/i386/_OSByteOrder.h +-tessel_concave.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h +-tessel_concave.o: /usr/include/sys/_types/_rune_t.h +-tessel_concave.o: /usr/include/sys/_types/_wchar_t.h +-tessel_concave.o: /usr/include/machine/types.h /usr/include/i386/types.h +-tessel_concave.o: /usr/include/sys/_types/_dev_t.h +-tessel_concave.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h +-tessel_concave.o: /usr/include/sys/_types/_rsize_t.h +-tessel_concave.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h +-tessel_concave.o: /usr/include/secure/_string.h /usr/include/sys/time.h +-tessel_concave.o: /usr/include/sys/_types/_fd_def.h +-tessel_concave.o: /usr/include/sys/_types/_timespec.h +-tessel_concave.o: /usr/include/sys/_types/_time_t.h +-tessel_concave.o: /usr/include/sys/_types/_suseconds_t.h +-tessel_concave.o: /usr/include/sys/_types/_fd_setsize.h +-tessel_concave.o: /usr/include/sys/_types/_fd_set.h +-tessel_concave.o: /usr/include/sys/_types/_fd_clr.h +-tessel_concave.o: /usr/include/sys/_types/_fd_isset.h +-tessel_concave.o: /usr/include/sys/_types/_fd_zero.h +-tessel_concave.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h +-tessel_concave.o: /usr/include/sys/_types/_clock_t.h +-tessel_concave.o: /usr/include/sys/_select.h linalg.h ++tessel_concave.o: /usr/include/sys/_null.h /usr/include/sys/_types.h ++tessel_concave.o: /usr/include/machine/_types.h /usr/include/math.h ++tessel_concave.o: /usr/include/machine/_limits.h /usr/include/stdlib.h ++tessel_concave.o: /usr/include/string.h /usr/include/strings.h ++tessel_concave.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h ++tessel_concave.o: /usr/include/sys/types.h /usr/include/machine/endian.h ++tessel_concave.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h ++tessel_concave.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h ++tessel_concave.o: /usr/include/time.h linalg.h + tessel_torus.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h +-tessel_torus.o: /usr/include/sys/_symbol_aliasing.h +-tessel_torus.o: /usr/include/sys/_posix_availability.h +-tessel_torus.o: /usr/include/Availability.h +-tessel_torus.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h +-tessel_torus.o: /usr/include/sys/_types.h /usr/include/machine/_types.h +-tessel_torus.o: /usr/include/i386/_types.h +-tessel_torus.o: /usr/include/sys/_pthread/_pthread_types.h +-tessel_torus.o: /usr/include/sys/_types/_va_list.h +-tessel_torus.o: /usr/include/sys/_types/_size_t.h +-tessel_torus.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h +-tessel_torus.o: /usr/include/sys/_types/_off_t.h +-tessel_torus.o: /usr/include/sys/_types/_ssize_t.h +-tessel_torus.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h +-tessel_torus.o: /usr/include/math.h /usr/include/stdlib.h +-tessel_torus.o: /usr/include/sys/wait.h /usr/include/sys/_types/_pid_t.h +-tessel_torus.o: /usr/include/sys/_types/_id_t.h /usr/include/sys/signal.h +-tessel_torus.o: /usr/include/sys/appleapiopts.h /usr/include/machine/signal.h +-tessel_torus.o: /usr/include/i386/signal.h /usr/include/machine/_mcontext.h +-tessel_torus.o: /usr/include/i386/_mcontext.h +-tessel_torus.o: /usr/include/mach/i386/_structs.h +-tessel_torus.o: /usr/include/sys/_pthread/_pthread_attr_t.h +-tessel_torus.o: /usr/include/sys/_types/_sigaltstack.h +-tessel_torus.o: /usr/include/sys/_types/_ucontext.h +-tessel_torus.o: /usr/include/sys/_types/_sigset_t.h +-tessel_torus.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h +-tessel_torus.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h +-tessel_torus.o: /usr/include/sys/_types/_int16_t.h +-tessel_torus.o: /usr/include/sys/_types/_int32_t.h +-tessel_torus.o: /usr/include/sys/_types/_int64_t.h +-tessel_torus.o: /usr/include/_types/_uint8_t.h +-tessel_torus.o: /usr/include/_types/_uint16_t.h +-tessel_torus.o: /usr/include/_types/_uint32_t.h +-tessel_torus.o: /usr/include/_types/_uint64_t.h +-tessel_torus.o: /usr/include/sys/_types/_intptr_t.h +-tessel_torus.o: /usr/include/sys/_types/_uintptr_t.h +-tessel_torus.o: /usr/include/_types/_intmax_t.h +-tessel_torus.o: /usr/include/_types/_uintmax_t.h +-tessel_torus.o: /usr/include/sys/_types/_timeval.h +-tessel_torus.o: /usr/include/machine/endian.h /usr/include/i386/endian.h +-tessel_torus.o: /usr/include/sys/_endian.h +-tessel_torus.o: /usr/include/libkern/_OSByteOrder.h +-tessel_torus.o: /usr/include/libkern/i386/_OSByteOrder.h +-tessel_torus.o: /usr/include/alloca.h /usr/include/sys/_types/_ct_rune_t.h +-tessel_torus.o: /usr/include/sys/_types/_rune_t.h +-tessel_torus.o: /usr/include/sys/_types/_wchar_t.h +-tessel_torus.o: /usr/include/machine/types.h /usr/include/i386/types.h +-tessel_torus.o: /usr/include/sys/_types/_dev_t.h +-tessel_torus.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h +-tessel_torus.o: /usr/include/sys/_types/_rsize_t.h +-tessel_torus.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h +-tessel_torus.o: /usr/include/secure/_string.h /usr/include/sys/time.h +-tessel_torus.o: /usr/include/sys/_types/_fd_def.h +-tessel_torus.o: /usr/include/sys/_types/_timespec.h +-tessel_torus.o: /usr/include/sys/_types/_time_t.h +-tessel_torus.o: /usr/include/sys/_types/_suseconds_t.h +-tessel_torus.o: /usr/include/sys/_types/_fd_setsize.h +-tessel_torus.o: /usr/include/sys/_types/_fd_set.h +-tessel_torus.o: /usr/include/sys/_types/_fd_clr.h +-tessel_torus.o: /usr/include/sys/_types/_fd_isset.h +-tessel_torus.o: /usr/include/sys/_types/_fd_zero.h +-tessel_torus.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h +-tessel_torus.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h +-tessel_torus.o: linalg.h +- +-# DEPENDENCIES MUST END AT END OF FILE +-# IF YOU PUT STUFF HERE IT WILL GO AWAY +-# see make depend above +- ++tessel_torus.o: /usr/include/sys/_null.h /usr/include/sys/_types.h ++tessel_torus.o: /usr/include/machine/_types.h /usr/include/math.h ++tessel_torus.o: /usr/include/machine/_limits.h /usr/include/stdlib.h ++tessel_torus.o: /usr/include/string.h /usr/include/strings.h ++tessel_torus.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h ++tessel_torus.o: /usr/include/sys/types.h /usr/include/machine/endian.h ++tessel_torus.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h ++tessel_torus.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h ++tessel_torus.o: /usr/include/time.h linalg.h diff --git a/biology/molden/files/patch-surf-makefile b/biology/molden/files/patch-surf-makefile deleted file mode 100644 index 56b421c1ea4c..000000000000 --- a/biology/molden/files/patch-surf-makefile +++ /dev/null @@ -1,181 +0,0 @@ ---- surf/Makefile.orig 2008-08-26 02:59:06.000000000 +0900 -+++ surf/Makefile 2012-09-24 02:45:55.000000000 +0900 -@@ -1,12 +1,12 @@ - # Compilation flags - #CC = cc --CC = cc -+#CC = cc - INCLUDE = -I. - #LINCLUDE = -lcurses -ltermcap -lm - LINCLUDE = -lm --OPT_CFLAGS = -O2 $(FLAGS) $(INCLUDE) -+#OPT_CFLAGS = -O2 $(FLAGS) $(INCLUDE) - #CFLAGS = -g $(FLAGS) $(INCLUDE) --CFLAGS = -O2 $(FLAGS) $(INCLUDE) -+#CFLAGS = -O2 $(FLAGS) $(INCLUDE) - - # These are the user object files in the application - SRCS = surf.c io.c compute.c dual.c utils.c lp.c chull.c tessel_cases.c \ -@@ -63,46 +63,120 @@ - # DO NOT DELETE THIS LINE -- make depend depends on it. - - --# DO NOT DELETE THIS LINE -- make depend depends on it. -+# DO NOT DELETE - --surf.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h --surf.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h --surf.o: linalg.h --io.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h --io.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h --io.o: linalg.h --compute.o: surf.h /usr/include/stdio.h /usr/include/math.h --compute.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h --compute.o: /usr/include/sys/time.h linalg.h chull.h dual.h --dual.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h --dual.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h --dual.o: linalg.h dual.h chull.h --utils.o: surf.h /usr/include/stdio.h /usr/include/math.h --utils.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h --utils.o: /usr/include/sys/time.h linalg.h --lp.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h --lp.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h --lp.o: linalg.h --chull.o: surf.h /usr/include/stdio.h /usr/include/math.h --chull.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h --chull.o: /usr/include/sys/time.h linalg.h chull.h --tessel_cases.o: surf.h /usr/include/stdio.h /usr/include/math.h --tessel_cases.o: /usr/include/stdlib.h /usr/include/sgidefs.h --tessel_cases.o: /usr/include/string.h /usr/include/sys/time.h linalg.h dual.h --tessel_patches.o: surf.h /usr/include/stdio.h /usr/include/math.h --tessel_patches.o: /usr/include/stdlib.h /usr/include/sgidefs.h --tessel_patches.o: /usr/include/string.h /usr/include/sys/time.h linalg.h --tessel_convex.o: surf.h /usr/include/stdio.h /usr/include/math.h --tessel_convex.o: /usr/include/stdlib.h /usr/include/sgidefs.h --tessel_convex.o: /usr/include/string.h /usr/include/sys/time.h linalg.h --tessel_concave.o: surf.h /usr/include/stdio.h /usr/include/math.h --tessel_concave.o: /usr/include/stdlib.h /usr/include/sgidefs.h --tessel_concave.o: /usr/include/string.h /usr/include/sys/time.h linalg.h --tessel_torus.o: surf.h /usr/include/stdio.h /usr/include/math.h --tessel_torus.o: /usr/include/stdlib.h /usr/include/sgidefs.h --tessel_torus.o: /usr/include/string.h /usr/include/sys/time.h linalg.h -- --# DEPENDENCIES MUST END AT END OF FILE --# IF YOU PUT STUFF HERE IT WILL GO AWAY --# see make depend above -- -+surf.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+surf.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+surf.o: /usr/include/machine/_types.h /usr/include/math.h -+surf.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+surf.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+surf.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+surf.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+surf.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+surf.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h -+io.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+io.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+io.o: /usr/include/machine/_types.h /usr/include/math.h -+io.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+io.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+io.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+io.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+io.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+io.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h -+compute.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+compute.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+compute.o: /usr/include/machine/_types.h /usr/include/math.h -+compute.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+compute.o: /usr/include/string.h /usr/include/strings.h -+compute.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h -+compute.o: /usr/include/sys/types.h /usr/include/machine/endian.h -+compute.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h -+compute.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h -+compute.o: /usr/include/time.h linalg.h chull.h dual.h -+dual.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+dual.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+dual.o: /usr/include/machine/_types.h /usr/include/math.h -+dual.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+dual.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+dual.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+dual.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+dual.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+dual.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h dual.h -+dual.o: chull.h -+utils.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+utils.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+utils.o: /usr/include/machine/_types.h /usr/include/math.h -+utils.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+utils.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+utils.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+utils.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+utils.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+utils.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h -+lp.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+lp.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+lp.o: /usr/include/machine/_types.h /usr/include/math.h -+lp.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+lp.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+lp.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+lp.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+lp.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+lp.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h -+chull.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+chull.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+chull.o: /usr/include/machine/_types.h /usr/include/math.h -+chull.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+chull.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+chull.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+chull.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+chull.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+chull.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h chull.h -+tessel_cases.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+tessel_cases.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+tessel_cases.o: /usr/include/machine/_types.h /usr/include/math.h -+tessel_cases.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+tessel_cases.o: /usr/include/string.h /usr/include/strings.h -+tessel_cases.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h -+tessel_cases.o: /usr/include/sys/types.h /usr/include/machine/endian.h -+tessel_cases.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h -+tessel_cases.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h -+tessel_cases.o: /usr/include/time.h linalg.h dual.h -+tessel_patches.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+tessel_patches.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+tessel_patches.o: /usr/include/machine/_types.h /usr/include/math.h -+tessel_patches.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+tessel_patches.o: /usr/include/string.h /usr/include/strings.h -+tessel_patches.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h -+tessel_patches.o: /usr/include/sys/types.h /usr/include/machine/endian.h -+tessel_patches.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h -+tessel_patches.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h -+tessel_patches.o: /usr/include/time.h linalg.h -+tessel_convex.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+tessel_convex.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+tessel_convex.o: /usr/include/machine/_types.h /usr/include/math.h -+tessel_convex.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+tessel_convex.o: /usr/include/string.h /usr/include/strings.h -+tessel_convex.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h -+tessel_convex.o: /usr/include/sys/types.h /usr/include/machine/endian.h -+tessel_convex.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h -+tessel_convex.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h -+tessel_convex.o: /usr/include/time.h linalg.h -+tessel_concave.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+tessel_concave.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+tessel_concave.o: /usr/include/machine/_types.h /usr/include/math.h -+tessel_concave.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+tessel_concave.o: /usr/include/string.h /usr/include/strings.h -+tessel_concave.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h -+tessel_concave.o: /usr/include/sys/types.h /usr/include/machine/endian.h -+tessel_concave.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h -+tessel_concave.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h -+tessel_concave.o: /usr/include/time.h linalg.h -+tessel_torus.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h -+tessel_torus.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+tessel_torus.o: /usr/include/machine/_types.h /usr/include/math.h -+tessel_torus.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+tessel_torus.o: /usr/include/string.h /usr/include/strings.h -+tessel_torus.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h -+tessel_torus.o: /usr/include/sys/types.h /usr/include/machine/endian.h -+tessel_torus.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h -+tessel_torus.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h -+tessel_torus.o: /usr/include/time.h linalg.h -- cgit v1.2.3