diff options
author | Sergey Matveychuk <sem@FreeBSD.org> | 2006-05-24 16:55:46 +0000 |
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committer | Sergey Matveychuk <sem@FreeBSD.org> | 2006-05-24 16:55:46 +0000 |
commit | 45d46bd0a512d136ab3e2a35764cdf98723dc4ce (patch) | |
tree | 240ef76205407a5e61bea98321fe79d1171075c0 /biology/fasta3/files | |
parent | Update to 0.3.4 (diff) |
- update to 34.t25.d7
- add MASTER_SITE_LOCAL as a second master site
PR: ports/97310
Submitted by: maintainer
Notes
Notes:
svn path=/head/; revision=163293
Diffstat (limited to 'biology/fasta3/files')
-rw-r--r-- | biology/fasta3/files/Makefile.freebsd | 67 |
1 files changed, 0 insertions, 67 deletions
diff --git a/biology/fasta3/files/Makefile.freebsd b/biology/fasta3/files/Makefile.freebsd deleted file mode 100644 index 5bd489001187..000000000000 --- a/biology/fasta3/files/Makefile.freebsd +++ /dev/null @@ -1,67 +0,0 @@ -# -# Makefile for building fasta3 on FreeBSD -# -# Fernan Aguero - <fernan@iib.unsam.edu.ar> - -# we take care of doing variable assignment using the '?=' and '+=' -# operators to preserve the value of variables if they are already -# defined. In FreeBSD this happens when fasta3 is build from the port or -# when the user has set these variables -- most notably CC and/or CFLAGS -# -- in /etc/make.conf - -# Compiler executable, and optional flags -CC?= gcc -CFLAGS?= -g -O2 - -# your FASTA host -FASTA_HOST?= "your_fasta_host" - -# common CFLAGS. These are the set of CFLAGS that are always used -COMMON_CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -c -DMAX_WORKERS=2 \ - -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT \ - -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO \ - -DHAS_INTTYPES -DSAMP_STATS - -# standard options, these will be added to the common CFLAGS if -# selected below -STANDARD_CFLAGS= -DSFCHAR="':'" -DFASTA_HOST='${FASTA_HOST}' \ - -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC - -# options for superfamily validations, these will be added to the common -# CFLAGS if selected below -SUPERFAMILY_CFLAGS= -DSFCHAR="'|'" -DSUPERFAMNUM -DBIG_LIB64 - -# here we define CFLAGS to be the sum of common flags plus a subset of -# optional flags that define our intended use. -# The default standard flags are selected by default, although the user -# can override this if s/he wants -CFLAGS+= ${COMMON_CFLAGS} ${STANDARD_CFLAGS} - -XDIR?= /usr/local/bin - -LIB_M+= -lm - -HFLAGS+= -o -NFLAGS+= -o - - - -# FreeBSD users BEWARE! Different threading models ahead! - -# The threading model has changed along the way from FreeBSD-4 to -# FreeBSD-6. If you're building fasta3 on your own, you will need to -# adjust this accordingly. The default works in FreeBSD-6x (currently -# the recommended major version for use in production). Or better yet, -# use the biology/fasta3 port from the ports collection, which will use -# the correct threading library for your OSVERSION - -THR_SUBS?= pthr_subs2 -THR_LIBS?= -lpthread -THR_CC?= - -DROPNFA_O = drop_nfa.o -DROPGSW_O = dropgsw.o -DROPRSS_O = dropnsw.o -DROPTFA_O = drop_tfa.o - -include Makefile34m.common |