diff options
author | Baptiste Daroussin <bapt@FreeBSD.org> | 2011-08-01 04:29:44 +0000 |
---|---|---|
committer | Baptiste Daroussin <bapt@FreeBSD.org> | 2011-08-01 04:29:44 +0000 |
commit | 2e6cabfa170ebe3c08ebd4c3f2fc7e23ba2f0f18 (patch) | |
tree | 8e6c4f2cceeabf768a42f84d0f1914bd45cb93f4 /biology/crimap | |
parent | Bye bye abandonwares (diff) |
Bye bye abandonwares (part 2)
2011-08-01 benchmarks/rawio: Looks like an abandonware, no more public distfiles
2011-08-01 benchmarks/tmetric: Looks like abandonware, no more public distfiles
2011-08-01 biology/L-Breeder: Looks like an abandonware, no more public distfile
2011-08-01 biology/crimap: Looks like an abandonware, no more public distfile
2011-08-01 biology/distribfold: No more upstream, looks like an abandonware
2011-08-01 biology/kinemage: Looks like an abandonware, no more public distfile
2011-08-01 biology/lsysexp: Looks like an abandonware, no more public distfile
2011-08-01 chinese/chm2html: Looks like an abandonware, no more public distfile
2011-08-01 chinese/ntuttf: No more public distfiles available
2011-08-01 chinese/reciteword: Looks like an abandonware, no more public distfile
2011-08-01 chinese/tocps: No more pulic distfiles
2011-08-01 chinese/xttmgr: Looks like an abandonware, no more public distfile
2011-08-01 comms/mserver: Looks like an abandonware, no more public distfiles
2011-08-01 comms/qicosi: Looks like an abandonware, no more public distfile
2011-08-01 comms/sms_client: Looks like an abandonware, no more public distfile
2011-08-01 comms/smstools: Looks like an abandonware, no more public distfile
2011-08-01 converters/siconv: Looks like an abandonware, no more public distfiles
2011-08-01 converters/utf8conv: Looks like an abandonware, no more public distfile
2011-08-01 databases/pgcluster: Looks like an abandonware, no more public distfile
2011-08-01 databases/py-MySQL: Please use databases/py-MySQLdb instead
2011-08-01 databases/py-SQLDict: Looks like an abandonware, no more public distfile
2011-08-01 databases/py-rrdpipe: Looks like an abandonware, no more public distfile
2011-08-01 databases/sybase_ase: no more public distfiles available
Notes
Notes:
svn path=/head/; revision=278678
Diffstat (limited to 'biology/crimap')
-rw-r--r-- | biology/crimap/Makefile | 51 | ||||
-rw-r--r-- | biology/crimap/distinfo | 2 | ||||
-rw-r--r-- | biology/crimap/files/patch-defs.h | 11 | ||||
-rw-r--r-- | biology/crimap/files/patch-our_allo.c | 24 | ||||
-rw-r--r-- | biology/crimap/files/patch-our_orde.c | 24 | ||||
-rw-r--r-- | biology/crimap/pkg-descr | 7 | ||||
-rw-r--r-- | biology/crimap/pkg-plist | 6 |
7 files changed, 0 insertions, 125 deletions
diff --git a/biology/crimap/Makefile b/biology/crimap/Makefile deleted file mode 100644 index 80a641052dc4..000000000000 --- a/biology/crimap/Makefile +++ /dev/null @@ -1,51 +0,0 @@ -# New ports collection makefile for: crimap -# Date created: 4 December 2001 -# Whom: Tony Maher <tonym@biolateral.com.au> -# -# $FreeBSD$ -# - -PORTNAME= crimap -PORTVERSION= 2.4 -PORTREVISION= 1 -CATEGORIES= biology -MASTER_SITES= http://compgen.rutgers.edu/multimap/crimap/ -DISTNAME= ${PORTNAME}.source -EXTRACT_SUFX= .tar.Z - -MAINTAINER= ports@FreeBSD.org -COMMENT= Creation of multilocus linkage maps - -DEPRECATED= Looks like an abandonware, no more public distfile -EXPIRATION_DATE= 2011-08-01 - -NO_WRKSUBDIR= true - -PROGRAMS= crimap -EXAMPLES= chr7a.gen demo.dat -EXIT_PATCH= e_ped.c get_log.c our_allo.c our_orde.c - -post-patch: -.for file in ${EXIT_PATCH} - @${REINPLACE_CMD} -e 's|exit\ *()|exit(0)|' ${WRKSRC}/${file} -.endfor - -do-build: - cd ${WRKSRC}; \ - ${CC} ${CFLAGS} -o crimap *.c -lm - -do-install: -.for file in ${PROGRAMS} - ${INSTALL_PROGRAM} ${WRKSRC}/${file} ${PREFIX}/bin -.endfor -.if !defined(NOPORTDOCS) - @${MKDIR} ${EXAMPLESDIR} - @${MKDIR} ${DOCSDIR} - ${CAT} ${WRKSRC}/progdoc_v2.4 | tbl | eqn -Tlatin1 | nroff -ms -t \ - > ${DOCSDIR}/progdoc_v2.4 -.for file in ${EXAMPLES} - ${INSTALL_DATA} ${WRKSRC}/${file} ${EXAMPLESDIR} -.endfor -.endif - -.include <bsd.port.mk> diff --git a/biology/crimap/distinfo b/biology/crimap/distinfo deleted file mode 100644 index 7699f9fffbd5..000000000000 --- a/biology/crimap/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (crimap.source.tar.Z) = d45b372ad1427b32d0b607ee8cc5a9ba0afd5f48171926c559278338a93cf847 -SIZE (crimap.source.tar.Z) = 110217 diff --git a/biology/crimap/files/patch-defs.h b/biology/crimap/files/patch-defs.h deleted file mode 100644 index 54e23c3a4ddd..000000000000 --- a/biology/crimap/files/patch-defs.h +++ /dev/null @@ -1,11 +0,0 @@ ---- ./defs.h.orig 1990-10-10 17:07:22.000000000 -0400 -+++ ./defs.h 2010-01-16 12:51:21.484797488 -0500 -@@ -17,7 +17,7 @@ - typedef short SHORT; - typedef long ID; - typedef long LINDEX; --typedef int INT; -+typedef long INT; - - struct loci_orders{ - SHORT num_loci; diff --git a/biology/crimap/files/patch-our_allo.c b/biology/crimap/files/patch-our_allo.c deleted file mode 100644 index 7062747d642d..000000000000 --- a/biology/crimap/files/patch-our_allo.c +++ /dev/null @@ -1,24 +0,0 @@ ---- ./our_allo.c.orig 1989-04-04 12:36:21.000000000 -0400 -+++ ./our_allo.c 2010-01-16 12:50:32.073330216 -0500 -@@ -21,10 +21,11 @@ - static HEADER base; - static HEADER *allocp = NULL; - -+static HEADER *morecore(); -+ - char *our_alloc(nbytes) - ALLOC nbytes; - { -- HEADER *morecore(); - HEADER *p; - HEADER *q; - ALLOC nunits; -@@ -76,7 +77,7 @@ - cp = malloc(rnu * sizeof(HEADER)); - if (!cp) { - printf("\n ERROR: ALLOCATION FAILED IN MORECORE\n"); -- exit(); -+ exit(0); - } - up = (HEADER *)cp; - up->s.size = rnu; diff --git a/biology/crimap/files/patch-our_orde.c b/biology/crimap/files/patch-our_orde.c deleted file mode 100644 index 5479206d547c..000000000000 --- a/biology/crimap/files/patch-our_orde.c +++ /dev/null @@ -1,24 +0,0 @@ ---- ./our_orde.c.orig 1989-04-04 12:36:22.000000000 -0400 -+++ ./our_orde.c 2010-01-16 12:50:32.076328932 -0500 -@@ -21,10 +21,11 @@ - static HEADER orders_base; - static HEADER *orders_allocp = NULL; - -+static HEADER *orders_morecore(); -+ - char *our_orders_alloc(nbytes) - ALLOC nbytes; - { -- HEADER *orders_morecore(); - HEADER *p, *q; - ALLOC nunits; - -@@ -76,7 +77,7 @@ - cp = malloc(rnu * sizeof(HEADER)); - if (!cp) { - printf("\nALLOC FAILED IN OUR_ORDERS_ALLOC\n"); -- exit (); -+ exit(0); - } - up = (HEADER *)cp; - up->s.size = rnu; diff --git a/biology/crimap/pkg-descr b/biology/crimap/pkg-descr deleted file mode 100644 index 7c3016894c1f..000000000000 --- a/biology/crimap/pkg-descr +++ /dev/null @@ -1,7 +0,0 @@ -"The main purpose of CRI-MAP is to allow rapid, largely automated -construction of multilocus linkage maps (and facilitate the attendant -tasks of assessing support relative to alternative locus orders, -generating LOD tables, and detecting data errors)." -- from the documentation - -WWW: http://compgen.rutgers.edu/multimap/crimap/ diff --git a/biology/crimap/pkg-plist b/biology/crimap/pkg-plist deleted file mode 100644 index c58d2e87d84e..000000000000 --- a/biology/crimap/pkg-plist +++ /dev/null @@ -1,6 +0,0 @@ -bin/crimap -%%PORTDOCS%%%%DOCSDIR%%/progdoc_v2.4 -%%PORTDOCS%%%%EXAMPLESDIR%%/chr7a.gen -%%PORTDOCS%%%%EXAMPLESDIR%%/demo.dat -%%PORTDOCS%%@dirrm %%DOCSDIR%% -%%PORTDOCS%%@dirrm %%EXAMPLESDIR%% |