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authorBaptiste Daroussin <bapt@FreeBSD.org>2011-08-01 04:29:44 +0000
committerBaptiste Daroussin <bapt@FreeBSD.org>2011-08-01 04:29:44 +0000
commit2e6cabfa170ebe3c08ebd4c3f2fc7e23ba2f0f18 (patch)
tree8e6c4f2cceeabf768a42f84d0f1914bd45cb93f4 /biology/crimap
parentBye bye abandonwares (diff)
Bye bye abandonwares (part 2)
2011-08-01 benchmarks/rawio: Looks like an abandonware, no more public distfiles 2011-08-01 benchmarks/tmetric: Looks like abandonware, no more public distfiles 2011-08-01 biology/L-Breeder: Looks like an abandonware, no more public distfile 2011-08-01 biology/crimap: Looks like an abandonware, no more public distfile 2011-08-01 biology/distribfold: No more upstream, looks like an abandonware 2011-08-01 biology/kinemage: Looks like an abandonware, no more public distfile 2011-08-01 biology/lsysexp: Looks like an abandonware, no more public distfile 2011-08-01 chinese/chm2html: Looks like an abandonware, no more public distfile 2011-08-01 chinese/ntuttf: No more public distfiles available 2011-08-01 chinese/reciteword: Looks like an abandonware, no more public distfile 2011-08-01 chinese/tocps: No more pulic distfiles 2011-08-01 chinese/xttmgr: Looks like an abandonware, no more public distfile 2011-08-01 comms/mserver: Looks like an abandonware, no more public distfiles 2011-08-01 comms/qicosi: Looks like an abandonware, no more public distfile 2011-08-01 comms/sms_client: Looks like an abandonware, no more public distfile 2011-08-01 comms/smstools: Looks like an abandonware, no more public distfile 2011-08-01 converters/siconv: Looks like an abandonware, no more public distfiles 2011-08-01 converters/utf8conv: Looks like an abandonware, no more public distfile 2011-08-01 databases/pgcluster: Looks like an abandonware, no more public distfile 2011-08-01 databases/py-MySQL: Please use databases/py-MySQLdb instead 2011-08-01 databases/py-SQLDict: Looks like an abandonware, no more public distfile 2011-08-01 databases/py-rrdpipe: Looks like an abandonware, no more public distfile 2011-08-01 databases/sybase_ase: no more public distfiles available
Notes
Notes: svn path=/head/; revision=278678
Diffstat (limited to 'biology/crimap')
-rw-r--r--biology/crimap/Makefile51
-rw-r--r--biology/crimap/distinfo2
-rw-r--r--biology/crimap/files/patch-defs.h11
-rw-r--r--biology/crimap/files/patch-our_allo.c24
-rw-r--r--biology/crimap/files/patch-our_orde.c24
-rw-r--r--biology/crimap/pkg-descr7
-rw-r--r--biology/crimap/pkg-plist6
7 files changed, 0 insertions, 125 deletions
diff --git a/biology/crimap/Makefile b/biology/crimap/Makefile
deleted file mode 100644
index 80a641052dc4..000000000000
--- a/biology/crimap/Makefile
+++ /dev/null
@@ -1,51 +0,0 @@
-# New ports collection makefile for: crimap
-# Date created: 4 December 2001
-# Whom: Tony Maher <tonym@biolateral.com.au>
-#
-# $FreeBSD$
-#
-
-PORTNAME= crimap
-PORTVERSION= 2.4
-PORTREVISION= 1
-CATEGORIES= biology
-MASTER_SITES= http://compgen.rutgers.edu/multimap/crimap/
-DISTNAME= ${PORTNAME}.source
-EXTRACT_SUFX= .tar.Z
-
-MAINTAINER= ports@FreeBSD.org
-COMMENT= Creation of multilocus linkage maps
-
-DEPRECATED= Looks like an abandonware, no more public distfile
-EXPIRATION_DATE= 2011-08-01
-
-NO_WRKSUBDIR= true
-
-PROGRAMS= crimap
-EXAMPLES= chr7a.gen demo.dat
-EXIT_PATCH= e_ped.c get_log.c our_allo.c our_orde.c
-
-post-patch:
-.for file in ${EXIT_PATCH}
- @${REINPLACE_CMD} -e 's|exit\ *()|exit(0)|' ${WRKSRC}/${file}
-.endfor
-
-do-build:
- cd ${WRKSRC}; \
- ${CC} ${CFLAGS} -o crimap *.c -lm
-
-do-install:
-.for file in ${PROGRAMS}
- ${INSTALL_PROGRAM} ${WRKSRC}/${file} ${PREFIX}/bin
-.endfor
-.if !defined(NOPORTDOCS)
- @${MKDIR} ${EXAMPLESDIR}
- @${MKDIR} ${DOCSDIR}
- ${CAT} ${WRKSRC}/progdoc_v2.4 | tbl | eqn -Tlatin1 | nroff -ms -t \
- > ${DOCSDIR}/progdoc_v2.4
-.for file in ${EXAMPLES}
- ${INSTALL_DATA} ${WRKSRC}/${file} ${EXAMPLESDIR}
-.endfor
-.endif
-
-.include <bsd.port.mk>
diff --git a/biology/crimap/distinfo b/biology/crimap/distinfo
deleted file mode 100644
index 7699f9fffbd5..000000000000
--- a/biology/crimap/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (crimap.source.tar.Z) = d45b372ad1427b32d0b607ee8cc5a9ba0afd5f48171926c559278338a93cf847
-SIZE (crimap.source.tar.Z) = 110217
diff --git a/biology/crimap/files/patch-defs.h b/biology/crimap/files/patch-defs.h
deleted file mode 100644
index 54e23c3a4ddd..000000000000
--- a/biology/crimap/files/patch-defs.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- ./defs.h.orig 1990-10-10 17:07:22.000000000 -0400
-+++ ./defs.h 2010-01-16 12:51:21.484797488 -0500
-@@ -17,7 +17,7 @@
- typedef short SHORT;
- typedef long ID;
- typedef long LINDEX;
--typedef int INT;
-+typedef long INT;
-
- struct loci_orders{
- SHORT num_loci;
diff --git a/biology/crimap/files/patch-our_allo.c b/biology/crimap/files/patch-our_allo.c
deleted file mode 100644
index 7062747d642d..000000000000
--- a/biology/crimap/files/patch-our_allo.c
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./our_allo.c.orig 1989-04-04 12:36:21.000000000 -0400
-+++ ./our_allo.c 2010-01-16 12:50:32.073330216 -0500
-@@ -21,10 +21,11 @@
- static HEADER base;
- static HEADER *allocp = NULL;
-
-+static HEADER *morecore();
-+
- char *our_alloc(nbytes)
- ALLOC nbytes;
- {
-- HEADER *morecore();
- HEADER *p;
- HEADER *q;
- ALLOC nunits;
-@@ -76,7 +77,7 @@
- cp = malloc(rnu * sizeof(HEADER));
- if (!cp) {
- printf("\n ERROR: ALLOCATION FAILED IN MORECORE\n");
-- exit();
-+ exit(0);
- }
- up = (HEADER *)cp;
- up->s.size = rnu;
diff --git a/biology/crimap/files/patch-our_orde.c b/biology/crimap/files/patch-our_orde.c
deleted file mode 100644
index 5479206d547c..000000000000
--- a/biology/crimap/files/patch-our_orde.c
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./our_orde.c.orig 1989-04-04 12:36:22.000000000 -0400
-+++ ./our_orde.c 2010-01-16 12:50:32.076328932 -0500
-@@ -21,10 +21,11 @@
- static HEADER orders_base;
- static HEADER *orders_allocp = NULL;
-
-+static HEADER *orders_morecore();
-+
- char *our_orders_alloc(nbytes)
- ALLOC nbytes;
- {
-- HEADER *orders_morecore();
- HEADER *p, *q;
- ALLOC nunits;
-
-@@ -76,7 +77,7 @@
- cp = malloc(rnu * sizeof(HEADER));
- if (!cp) {
- printf("\nALLOC FAILED IN OUR_ORDERS_ALLOC\n");
-- exit ();
-+ exit(0);
- }
- up = (HEADER *)cp;
- up->s.size = rnu;
diff --git a/biology/crimap/pkg-descr b/biology/crimap/pkg-descr
deleted file mode 100644
index 7c3016894c1f..000000000000
--- a/biology/crimap/pkg-descr
+++ /dev/null
@@ -1,7 +0,0 @@
-"The main purpose of CRI-MAP is to allow rapid, largely automated
-construction of multilocus linkage maps (and facilitate the attendant
-tasks of assessing support relative to alternative locus orders,
-generating LOD tables, and detecting data errors)."
-- from the documentation
-
-WWW: http://compgen.rutgers.edu/multimap/crimap/
diff --git a/biology/crimap/pkg-plist b/biology/crimap/pkg-plist
deleted file mode 100644
index c58d2e87d84e..000000000000
--- a/biology/crimap/pkg-plist
+++ /dev/null
@@ -1,6 +0,0 @@
-bin/crimap
-%%PORTDOCS%%%%DOCSDIR%%/progdoc_v2.4
-%%PORTDOCS%%%%EXAMPLESDIR%%/chr7a.gen
-%%PORTDOCS%%%%EXAMPLESDIR%%/demo.dat
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%