biology/bolt-lmm: Upgrade to 2.3.4

Remove previously upstreamed patches
New Makefile patch that preserves default behavior and should be palatable
to upstream

1 files changed, 0 insertions, 13 deletions

diff --git a/biology/bolt-lmm/files/patch-src_Jackknife.cpp b/biology/bolt-lmm/files/patch-src_Jackknife.cpp
deleted file mode 100644
index 6d6a970889c3..000000000000
--- a/biology/bolt-lmm/files/patch-src_Jackknife.cpp
+++ /dev/null
@@ -1,13 +0,0 @@
---- src/Jackknife.cpp.orig	2019-08-03 00:15:27 UTC
-+++ src/Jackknife.cpp
-@@ -28,8 +28,8 @@ namespace Jackknife {
-   using std::make_pair;
- 
-   double stddev(const vector <double> &x, int n) {
--    for (int i = 0; i < n; i++) if (isnan(x[i])) return NAN;
--    for (int i = 0; i < n; i++) if (isinf(x[i])) return INFINITY;
-+    for (int i = 0; i < n; i++) if (std::isnan(x[i])) return NAN;
-+    for (int i = 0; i < n; i++) if (std::isinf(x[i])) return INFINITY;
-     double s = 0.0, s2 = 0.0;
-     for (int i = 0; i < n; i++) {
-       s += x[i];