science/hdf: update 4.2.15 → 4.3.0; add JAVA option

The JAVA option is to support the upcoming HDFView port.

6 files changed, 50 insertions, 193 deletions

diff --git a/science/hdf/Makefile b/science/hdf/Makefile
index 95587224dcf0..748497347a1c 100644
--- a/science/hdf/Makefile
+++ b/science/hdf/Makefile
@@ -1,35 +1,47 @@
 PORTNAME=	hdf
-PORTVERSION=	4.2.15
-PORTREVISION=	4
+DISTVERSION=	4.3.0
 PORTEPOCH=	1
 CATEGORIES=	science archivers graphics
-MASTER_SITES=	http://www.hdfgroup.org/ftp/HDF/releases/HDF${PORTVERSION}/src/ \
-		ftp://ftp.hdfgroup.org/HDF/releases/HDF${PORTVERSION}/src/
+MASTER_SITES=	https://github.com/HDFGroup/hdf4/releases/download/hdf${DISTVERSION}/
+DISTNAME=	hdf${DISTVERSION}
 
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	Hierarchical Data Format library (from NCSA)
-WWW=		https://www.hdfgroup.org/products/hdf4/
+WWW=		https://www.hdfgroup.org/solutions/hdf4/
+
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/COPYING
 
 NOT_FOR_ARCHS=		aarch64 armv6 armv7
 NOT_FOR_ARCHS_REASON=	fails to compile: no machine type has been defined
 
 LIB_DEPENDS=	libsz.so:science/libaec
 
-CONFLICTS_INSTALL=	netcdf-4.[0-9]*
-
 USES=		fortran jpeg libtool
+USE_LDCONFIG=	yes
+
+WRKSRC=		${WRKDIR}/hdfsrc
+
 GNU_CONFIGURE=	yes
-CONFIGURE_ARGS=	--enable-shared --with-jpeg=${LOCALBASE} \
+CONFIGURE_ARGS=	--enable-shared \
+		--with-jpeg=${LOCALBASE} \
 		--with-szlib=${LOCALBASE}
 GNU_CONFIGURE_MANPREFIX=${PREFIX}/share/
-USE_LDCONFIG=	yes
+
 INSTALL_TARGET=	install-strip
 TEST_TARGET=	check
 
-PORTDATA=	*
-PORTEXAMPLES=	*
+OPTIONS_DEFINE=		JAVA
+OPTIONS_DEFAULT=	JAVA
+OPTIONS_SUB=		yes
 
-OPTIONS_DEFINE=	EXAMPLES
+JAVA_CONFIGURE_ENABLE=	java
+JAVA_USE=		JAVA=yes
+JAVA_VARS=		JAVA_VERSION=17 \
+			JAVA_BUILD=yes
+JAVA_CONFIGURE_ENV=	JAVA_HOME=${JAVA_HOME} \
+			PATH=${JAVA_HOME}/bin:${PATH}
+JAVA_MAKE_ENV=		PATH=${JAVA_HOME}/bin:${PATH}
 
 .include <bsd.port.pre.mk>
 
@@ -39,18 +51,6 @@ OPTIONS_DEFINE=	EXAMPLES
 FFLAGS+=	-fallow-argument-mismatch
 .endif
 
-post-patch:
-	@${REINPLACE_CMD} -e '/PROD_/ s|=.*|=""|' ${WRKSRC}/config/freebsd
-	@${REINPLACE_CMD} -e 's/ || (__APPLE__.*//' \
-		${WRKSRC}/hdf/test/fortest.c
-
-post-install:
-	${INSTALL_MAN} ${WRKSRC}/man/hdfunpac.1 \
-		${STAGEDIR}${PREFIX}/share/man/man1
-	# Allow to build on PowerPC
-	@${REINPLACE_CMD} -e '/if defined (__APPLE__)/ \
-		s,),) || defined(__powerpc__),' ${WRKSRC}/hdf/src/hdfi.h
-	${INSTALL_MAN} ${WRKSRC}/man/gr_chunk.3 \
-		${STAGEDIR}${PREFIX}/share/man/man3
+CONFLICTS_INSTALL=	netcdf-4.[0-9]*
 
 .include <bsd.port.post.mk>
diff --git a/science/hdf/distinfo b/science/hdf/distinfo
index 0bb7c4798075..a2c3b55e4c1c 100644
--- a/science/hdf/distinfo
+++ b/science/hdf/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1598126512
-SHA256 (hdf-4.2.15.tar.gz) = dbeeef525af7c2d01539906c28953f0fdab7dba603d1bc1ec4a5af60d002c459
-SIZE (hdf-4.2.15.tar.gz) = 4461869
+TIMESTAMP = 1727142524
+SHA256 (hdf4.3.0.tar.gz) = 282b244a819790590950f772095abcaeef405b0f17d2ee1eb5039da698cf938b
+SIZE (hdf4.3.0.tar.gz) = 18408537
diff --git a/science/hdf/files/patch-configure b/science/hdf/files/patch-configure
index 7d5bc5edeff9..b6f0dc2b89ec 100644
--- a/science/hdf/files/patch-configure
+++ b/science/hdf/files/patch-configure
@@ -1,6 +1,6 @@
---- configure.orig	2012-08-07 13:11:45.000000000 +0900
-+++ configure	2012-08-14 21:08:48.000000000 +0900
-@@ -5837,11 +5837,11 @@
+--- configure.orig	2024-02-29 16:34:09 UTC
++++ configure
+@@ -6537,11 +6537,11 @@ fi
      enable_shared="no"
  fi
  
@@ -15,5 +15,5 @@
 +#    fi
 +#fi
  
- 
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ln -s works" >&5
+ ## ----------------------------------------------------------------------
+ ## Check if they would like the Java native interface (JNI) compiled
diff --git a/science/hdf/files/patch-hdf-src-Makefile.in b/science/hdf/files/patch-hdf-src-Makefile.in
index 64cd97670426..25cc67a63ecf 100644
--- a/science/hdf/files/patch-hdf-src-Makefile.in
+++ b/science/hdf/files/patch-hdf-src-Makefile.in
@@ -1,20 +1,11 @@
---- hdf/src/Makefile.in.orig	2015-02-10 00:43:49.000000000 +0800
-+++ hdf/src/Makefile.in	2015-03-16 23:48:46.316696873 +0800
-@@ -296,7 +296,7 @@
- INSTALL_SCRIPT = @INSTALL_SCRIPT@
- INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+--- hdf/src/Makefile.in.orig	2024-02-29 16:34:09 UTC
++++ hdf/src/Makefile.in
+@@ -415,7 +415,7 @@ LD = @LD@
+ JNIFLAGS = @JNIFLAGS@
+ JUNIT = @JUNIT@
  LD = @LD@
 -LDFLAGS = @LDFLAGS@
 +LDFLAGS = @LDFLAGS@ -version-number 2
- LEX = @LEX@
  LIBOBJS = @LIBOBJS@
  LIBS = @LIBS@
-@@ -408,8 +408,6 @@
- LIBMFHDF = $(top_builddir)/mfhdf/libsrc/libmfhdf.la
- H4CC = ${DESTDIR}$(bindir)/h4cc
- H4FC = ${DESTDIR}$(bindir)/h4fc
--@HDF_BUILD_XDR_TRUE@XDR_ADD = -R$(abs_top_builddir)/mfhdf/xdr/.libs
--@HDF_BUILD_SHARED_TRUE@AM_LDFLAGS = -R$(abs_top_builddir)/mfhdf/libsrc/.libs -R$(abs_top_builddir)/hdf/src/.libs $(XDR_ADD)
- ACLOCAL_AMFLAGS = "-I m4"
- 
- # .chkexe files are used to mark tests that have run successfully.
+ LIBTOOL = @LIBTOOL@
diff --git a/science/hdf/files/patch-mfhdf-libsrc-Makefile.in b/science/hdf/files/patch-mfhdf-libsrc-Makefile.in
index e9ca8914a248..b05808bd9ea1 100644
--- a/science/hdf/files/patch-mfhdf-libsrc-Makefile.in
+++ b/science/hdf/files/patch-mfhdf-libsrc-Makefile.in
@@ -1,20 +1,11 @@
---- mfhdf/libsrc/Makefile.in.orig	2015-02-10 00:43:51.000000000 +0800
-+++ mfhdf/libsrc/Makefile.in	2015-03-16 23:48:46.325704247 +0800
-@@ -272,7 +272,7 @@
- INSTALL_SCRIPT = @INSTALL_SCRIPT@
- INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+--- mfhdf/libsrc/Makefile.in.orig	2024-02-29 16:34:10 UTC
++++ mfhdf/libsrc/Makefile.in
+@@ -371,7 +371,7 @@ LD = @LD@
+ JNIFLAGS = @JNIFLAGS@
+ JUNIT = @JUNIT@
  LD = @LD@
 -LDFLAGS = @LDFLAGS@
 +LDFLAGS = @LDFLAGS@ -version-number 3
- LEX = @LEX@
  LIBOBJS = @LIBOBJS@
  LIBS = @LIBS@
-@@ -384,8 +384,6 @@
- LIBMFHDF = $(top_builddir)/mfhdf/libsrc/libmfhdf.la
- H4CC = ${DESTDIR}$(bindir)/h4cc
- H4FC = ${DESTDIR}$(bindir)/h4fc
--@HDF_BUILD_XDR_TRUE@XDR_ADD = -R$(abs_top_builddir)/mfhdf/xdr/.libs
--@HDF_BUILD_SHARED_TRUE@AM_LDFLAGS = -R$(abs_top_builddir)/mfhdf/libsrc/.libs -R$(abs_top_builddir)/hdf/src/.libs $(XDR_ADD)
- ACLOCAL_AMFLAGS = "-I m4"
- 
- # .chkexe files are used to mark tests that have run successfully.
+ LIBTOOL = @LIBTOOL@
diff --git a/science/hdf/pkg-plist b/science/hdf/pkg-plist
index 8e3aac1d75e0..8160e961785f 100644
--- a/science/hdf/pkg-plist
+++ b/science/hdf/pkg-plist
@@ -1,6 +1,5 @@
 bin/gif2hdf
 bin/h4cc
-bin/h4fc
 bin/h4redeploy
 bin/hdf24to8
 bin/hdf2gif
@@ -26,162 +25,38 @@ bin/ristosds
 bin/vmake
 bin/vshow
 include/H4api_adpt.h
-include/atom.h
-include/bitvect.h
-include/cdeflate.h
-include/cnbit.h
-include/cnone.h
-include/crle.h
-include/cskphuff.h
-include/cszip.h
 include/df.h
-include/dfan.h
-include/dffunc.f90
-include/dffunc.inc
-include/dfgr.h
-include/dfi.h
-include/dfrig.h
-include/dfsd.h
-include/dfstubs.h
-include/dfufp2i.h
-include/dynarray.h
 include/h4config.h
 include/hbitio.h
-include/hchunks.h
 include/hcomp.h
-include/hcompi.h
-include/hconv.h
 include/hdatainfo.h
-include/hdf.f90
 include/hdf.h
-include/hdf.inc
 include/hdf2netcdf.h
-include/hdfi.h
 include/herr.h
 include/hfile.h
-include/hkit.h
 include/hlimits.h
 include/hntdefs.h
 include/hproto.h
-include/hproto_fortran.h
 include/htags.h
-include/linklist.h
-include/local_nc.h
 include/mfan.h
 include/mfdatainfo.h
-include/mffunc.f90
-include/mffunc.inc
 include/mfgr.h
 include/mfhdf.h
-include/mfhdfi.h
-include/mstdio.h
-include/netcdf.f90
 include/netcdf.h
-include/netcdf.inc
-include/tbbt.h
-include/vattr.h
 include/vg.h
+%%JAVA%%lib/jarhdf-4.2.17-1.jar
 lib/libdf.a
 lib/libdf.so
 lib/libdf.so.2
 lib/libdf.so.2.0.0
 lib/libhdf4.settings
+%%JAVA%%lib/libhdf_java.a
+%%JAVA%%lib/libhdf_java.so
+%%JAVA%%lib/libhdf_java.so.0
+%%JAVA%%lib/libhdf_java.so.0.0.0
 lib/libmfhdf.a
 lib/libmfhdf.so
 lib/libmfhdf.so.3
 lib/libmfhdf.so.3.0.0
-share/man/man1/hdf.1.gz
-share/man/man1/hdfunpac.1.gz
 share/man/man1/ncdump.1.gz
 share/man/man1/ncgen.1.gz
-share/man/man3/gr_chunk.3.gz
-%%DATADIR%%4_examples/README
-%%DATADIR%%4_examples/c/AN_create_annotation.c
-%%DATADIR%%4_examples/c/AN_get_annotation_info.c
-%%DATADIR%%4_examples/c/AN_read_annotation.c
-%%DATADIR%%4_examples/c/GR_create_and_write_image.c
-%%DATADIR%%4_examples/c/GR_get_attribute.c
-%%DATADIR%%4_examples/c/GR_image_info.c
-%%DATADIR%%4_examples/c/GR_modify_image.c
-%%DATADIR%%4_examples/c/GR_read_chunks.c
-%%DATADIR%%4_examples/c/GR_read_image.c
-%%DATADIR%%4_examples/c/GR_read_palette.c
-%%DATADIR%%4_examples/c/GR_set_attribute.c
-%%DATADIR%%4_examples/c/GR_write_chunks.c
-%%DATADIR%%4_examples/c/GR_write_palette.c
-%%DATADIR%%4_examples/c/SD_alter_sds_values.c
-%%DATADIR%%4_examples/c/SD_chunking_example.c
-%%DATADIR%%4_examples/c/SD_compress_sds.c
-%%DATADIR%%4_examples/c/SD_create_sds.c
-%%DATADIR%%4_examples/c/SD_dimscale_vs_sds.c
-%%DATADIR%%4_examples/c/SD_find_sds_by_name.c
-%%DATADIR%%4_examples/c/SD_get_attr.c
-%%DATADIR%%4_examples/c/SD_get_info.c
-%%DATADIR%%4_examples/c/SD_mv_sds_to_external.c
-%%DATADIR%%4_examples/c/SD_read_from_sds.c
-%%DATADIR%%4_examples/c/SD_read_subsets.c
-%%DATADIR%%4_examples/c/SD_set_attr.c
-%%DATADIR%%4_examples/c/SD_set_get_dim_info.c
-%%DATADIR%%4_examples/c/SD_unlimited_sds.c
-%%DATADIR%%4_examples/c/SD_write_slab.c
-%%DATADIR%%4_examples/c/SD_write_to_sds.c
-%%DATADIR%%4_examples/c/VD_create_onefield_vdatas.c
-%%DATADIR%%4_examples/c/VD_create_vdatas.c
-%%DATADIR%%4_examples/c/VD_get_vdata_info.c
-%%DATADIR%%4_examples/c/VD_locate_vdata.c
-%%DATADIR%%4_examples/c/VD_read_from_vdata.c
-%%DATADIR%%4_examples/c/VD_read_mixed_vdata.c
-%%DATADIR%%4_examples/c/VD_set_get_vdata_attr.c
-%%DATADIR%%4_examples/c/VD_write_mixed_vdata.c
-%%DATADIR%%4_examples/c/VD_write_mixed_vdata_struct.c
-%%DATADIR%%4_examples/c/VD_write_to_vdata.c
-%%DATADIR%%4_examples/c/VG_add_sds_to_vgroup.c
-%%DATADIR%%4_examples/c/VG_create_vgroup.c
-%%DATADIR%%4_examples/c/VG_get_vgroup_info.c
-%%DATADIR%%4_examples/c/VG_insert_vdatas_to_vgroup.c
-%%DATADIR%%4_examples/c/VG_set_get_vgroup_attr.c
-%%DATADIR%%4_examples/c/VG_vgroup_contents.c
-%%DATADIR%%4_examples/c/run-c-ex.sh
-%%DATADIR%%4_examples/fortran/AN_create_annotation.f
-%%DATADIR%%4_examples/fortran/AN_get_annotation_info.f
-%%DATADIR%%4_examples/fortran/AN_read_annotation.f
-%%DATADIR%%4_examples/fortran/GR_create_and_write_image.f
-%%DATADIR%%4_examples/fortran/GR_get_attribute.f
-%%DATADIR%%4_examples/fortran/GR_image_info.f
-%%DATADIR%%4_examples/fortran/GR_modify_image.f
-%%DATADIR%%4_examples/fortran/GR_read_image.f
-%%DATADIR%%4_examples/fortran/GR_read_palette.f
-%%DATADIR%%4_examples/fortran/GR_set_attribute.f
-%%DATADIR%%4_examples/fortran/GR_write_palette.f
-%%DATADIR%%4_examples/fortran/SD_alter_sds_values.f
-%%DATADIR%%4_examples/fortran/SD_chunking_example.f
-%%DATADIR%%4_examples/fortran/SD_compress_sds.f
-%%DATADIR%%4_examples/fortran/SD_create_sds.f
-%%DATADIR%%4_examples/fortran/SD_dimscale_vs_sds.f
-%%DATADIR%%4_examples/fortran/SD_find_sds_by_name.f
-%%DATADIR%%4_examples/fortran/SD_get_attr.f
-%%DATADIR%%4_examples/fortran/SD_get_info.f
-%%DATADIR%%4_examples/fortran/SD_mv_sds_to_external.f
-%%DATADIR%%4_examples/fortran/SD_read_from_sds.f
-%%DATADIR%%4_examples/fortran/SD_read_subsets.f
-%%DATADIR%%4_examples/fortran/SD_set_attr.f
-%%DATADIR%%4_examples/fortran/SD_set_get_dim_info.f
-%%DATADIR%%4_examples/fortran/SD_unlimited_sds.f
-%%DATADIR%%4_examples/fortran/SD_write_slab.f
-%%DATADIR%%4_examples/fortran/SD_write_to_sds.f
-%%DATADIR%%4_examples/fortran/VD_create_onefield_vdatas.f
-%%DATADIR%%4_examples/fortran/VD_create_vdatas.f
-%%DATADIR%%4_examples/fortran/VD_get_vdata_info.f
-%%DATADIR%%4_examples/fortran/VD_locate_vdata.f
-%%DATADIR%%4_examples/fortran/VD_read_from_vdata.f
-%%DATADIR%%4_examples/fortran/VD_read_mixed_vdata.f
-%%DATADIR%%4_examples/fortran/VD_write_mixed_vdata.f
-%%DATADIR%%4_examples/fortran/VD_write_to_vdata.f
-%%DATADIR%%4_examples/fortran/VG_add_sds_to_vgroup.f
-%%DATADIR%%4_examples/fortran/VG_create_vgroup.f
-%%DATADIR%%4_examples/fortran/VG_get_vgroup_info.f
-%%DATADIR%%4_examples/fortran/VG_insert_vdatas_to_vgroup.f
-%%DATADIR%%4_examples/fortran/VG_set_get_vgroup_attr.f
-%%DATADIR%%4_examples/fortran/VG_vgroup_contents.f
-%%DATADIR%%4_examples/fortran/run-fortran-ex.sh
-%%DATADIR%%4_examples/run-all-ex.sh