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authorYuri Victorovich <yuri@FreeBSD.org>2019-01-16 04:36:12 +0000
committerYuri Victorovich <yuri@FreeBSD.org>2019-01-16 04:36:12 +0000
commit98b078ed4d937e86d767bf736ca943a3a38f5ea2 (patch)
tree926fb1e63315b527aeafd9bd85dacaf8b235de76
parentUpdate to 3.3.2. (diff)
science/tinker: Update 8.4.4 -> 8.5.3
Reported by: portscout
Notes
Notes: svn path=/head/; revision=490442
-rw-r--r--science/tinker/Makefile3
-rw-r--r--science/tinker/distinfo6
-rw-r--r--science/tinker/files/patch-make_Makefile10
-rw-r--r--science/tinker/pkg-plist2
4 files changed, 13 insertions, 8 deletions
diff --git a/science/tinker/Makefile b/science/tinker/Makefile
index 2b73f35e6909..7a8539a7cb3e 100644
--- a/science/tinker/Makefile
+++ b/science/tinker/Makefile
@@ -2,8 +2,7 @@
# $FreeBSD$
PORTNAME= tinker
-DISTVERSION= 8.4.4
-PORTREVISION= 2
+DISTVERSION= 8.5.3
CATEGORIES= science
MASTER_SITES= https://dasher.wustl.edu/tinker/downloads/
diff --git a/science/tinker/distinfo b/science/tinker/distinfo
index d20c59c39ccc..79deee1a487a 100644
--- a/science/tinker/distinfo
+++ b/science/tinker/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1538861663
-SHA256 (tinker-8.4.4.tar.gz) = c263298383bcd5a72f281d25640f7be2e9c465e08c1a61c3c3de59b6bb828da6
-SIZE (tinker-8.4.4.tar.gz) = 35549655
+TIMESTAMP = 1547612122
+SHA256 (tinker-8.5.3.tar.gz) = 96ede325ce32a1a330d1e9e62258b089a9a8563769b16eb42705e6415355ed86
+SIZE (tinker-8.5.3.tar.gz) = 41931411
diff --git a/science/tinker/files/patch-make_Makefile b/science/tinker/files/patch-make_Makefile
index daae1f67378d..c39aa9924608 100644
--- a/science/tinker/files/patch-make_Makefile
+++ b/science/tinker/files/patch-make_Makefile
@@ -1,4 +1,4 @@
---- make/Makefile.orig 2018-05-01 03:12:05 UTC
+--- make/Makefile.orig 2019-01-16 04:21:45 UTC
+++ make/Makefile
@@ -84,7 +84,7 @@ APBS_LIBS = -lapbsmainroutines -lapbs -l
@@ -6,10 +6,10 @@
F77FLAGS = -c
-OPTFLAGS = -Ofast -mssse3 -fopenmp
+OPTFLAGS = -Ofast $(PORT_SIMD_FLAGS) -fopenmp
+ #OPTFLAGS = -Og -fbacktrace -fcheck=bounds -Wunused -Wmaybe-uninitialized
LIBDIR = -L. -L$(TINKER_LIBDIR)/macos
LIBS =
- LIBFLAGS = -crusv
-@@ -754,130 +754,130 @@ listing:
+@@ -787,132 +787,132 @@ listing:
cat *.f *.c > tinker.txt
rename_bin:
@@ -61,6 +61,7 @@
- mv testpair.x $(BINDIR)/testpair
- mv testpol.x $(BINDIR)/testpol
- mv testrot.x $(BINDIR)/testrot
+- mv testvir.x $(BINDIR)/testvir
- mv timer.x $(BINDIR)/timer
- mv timerot.x $(BINDIR)/timerot
- mv torsfit.x $(BINDIR)/torsfit
@@ -122,6 +123,7 @@
+ ${BSD_INSTALL_PROGRAM} testpair.x $(BINDIR)/testpair
+ ${BSD_INSTALL_PROGRAM} testpol.x $(BINDIR)/testpol
+ ${BSD_INSTALL_PROGRAM} testrot.x $(BINDIR)/testrot
++ ${BSD_INSTALL_PROGRAM} testvir.x $(BINDIR)/testvir
+ ${BSD_INSTALL_PROGRAM} timer.x $(BINDIR)/timer
+ ${BSD_INSTALL_PROGRAM} timerot.x $(BINDIR)/timerot
+ ${BSD_INSTALL_PROGRAM} torsfit.x $(BINDIR)/torsfit
@@ -185,6 +187,7 @@
- mv testpair.x $(BINDIR)/testpair.exe
- mv testpol.x $(BINDIR)/testpol.exe
- mv testrot.x $(BINDIR)/testrot.exe
+- mv testvir.x $(BINDIR)/testvir.exe
- mv timer.x $(BINDIR)/timer.exe
- mv timerot.x $(BINDIR)/timerot.exe
- mv torsfit.x $(BINDIR)/torsfit.exe
@@ -246,6 +249,7 @@
+ ${BSD_INSTALL_PROGRAM} testpair.x $(BINDIR)/testpair.exe
+ ${BSD_INSTALL_PROGRAM} testpol.x $(BINDIR)/testpol.exe
+ ${BSD_INSTALL_PROGRAM} testrot.x $(BINDIR)/testrot.exe
++ ${BSD_INSTALL_PROGRAM} testvir.x $(BINDIR)/testvir.exe
+ ${BSD_INSTALL_PROGRAM} timer.x $(BINDIR)/timer.exe
+ ${BSD_INSTALL_PROGRAM} timerot.x $(BINDIR)/timerot.exe
+ ${BSD_INSTALL_PROGRAM} torsfit.x $(BINDIR)/torsfit.exe
diff --git a/science/tinker/pkg-plist b/science/tinker/pkg-plist
index 37d34dca21b1..abdad02c537c 100644
--- a/science/tinker/pkg-plist
+++ b/science/tinker/pkg-plist
@@ -46,6 +46,7 @@ bin/testhess
bin/testpair
bin/testpol
bin/testrot
+bin/testvir
bin/timer
bin/timerot
bin/torsfit
@@ -76,6 +77,7 @@ bin/xyzpdb
%%DATADIR%%/params/charmm22.prm
%%DATADIR%%/params/charmm22cmap.prm
%%DATADIR%%/params/dang.prm
+%%DATADIR%%/params/hippo18.prm
%%DATADIR%%/params/hoch.prm
%%DATADIR%%/params/iwater.prm
%%DATADIR%%/params/mm2.prm