Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt

35 files changed, 65 insertions, 38 deletions

diff --git a/audio/csound6/Makefile b/audio/csound6/Makefile
index fa42f23b0343..7975916ae21e 100644
--- a/audio/csound6/Makefile
+++ b/audio/csound6/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	csound
 PORTVERSION=	6.06
-PORTREVISION=	7
+PORTREVISION=	8
 CATEGORIES=	audio lang
 MASTER_SITES=	SF/${PORTNAME}/${PORTNAME}6/${PORTNAME:S/c/C/}${PORTVERSION}
 PKGNAMESUFFIX=	6
diff --git a/cad/freecad/Makefile b/cad/freecad/Makefile
index e63a8c4839b5..bf6435375c82 100644
--- a/cad/freecad/Makefile
+++ b/cad/freecad/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	FreeCAD
 DISTVERSION=	0.17.g20170310
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	cad
 
 MAINTAINER=	tj+freebsd_ports@a13.fr
diff --git a/cad/gmsh/Makefile b/cad/gmsh/Makefile
index 201e5e7abbab..4beb9129dad0 100644
--- a/cad/gmsh/Makefile
+++ b/cad/gmsh/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	gmsh
 PORTVERSION=	3.0.2
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	cad
 MASTER_SITES=	http://gmsh.info/src/
 DISTNAME=	${PORTNAME}-${PORTVERSION}-source
diff --git a/devel/py-tables/Makefile b/devel/py-tables/Makefile
index 5279e7ae7a5c..cef5e66dfd11 100644
--- a/devel/py-tables/Makefile
+++ b/devel/py-tables/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	tables
 PORTVERSION=	3.4.2
+PORTREVISION=	1
 CATEGORIES=	devel python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/graphics/alembic/Makefile b/graphics/alembic/Makefile
index 92ae40c745f1..4aa5ad89e461 100644
--- a/graphics/alembic/Makefile
+++ b/graphics/alembic/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	alembic
 PORTVERSION=	1.7.1
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	graphics
 
 MAINTAINER=	danfe@FreeBSD.org
diff --git a/graphics/caffe/Makefile b/graphics/caffe/Makefile
index 9a437b916fec..ea0efa922bfc 100644
--- a/graphics/caffe/Makefile
+++ b/graphics/caffe/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	caffe
 PORTVERSION=	1.0
+PORTREVISION=	1
 CATEGORIES=	graphics
 
 MAINTAINER=	eric@camachat.org
diff --git a/graphics/gdal/Makefile b/graphics/gdal/Makefile
index 624a264c448e..3ec339c009ca 100644
--- a/graphics/gdal/Makefile
+++ b/graphics/gdal/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	gdal
 PORTVERSION=	2.2.0
+PORTREVISION=	1
 CATEGORIES=	graphics geography
 MASTER_SITES=	http://download.osgeo.org/gdal/${PORTVERSION}/ \
 		ftp://ftp.remotesensing.org/pub/gdal/${PORTVERSION}/ \
diff --git a/graphics/openimageio/Makefile b/graphics/openimageio/Makefile
index bd0bb22713a3..89afd9190c28 100644
--- a/graphics/openimageio/Makefile
+++ b/graphics/openimageio/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	openimageio
 PORTVERSION=	1.6.12
 DISTVERSIONPREFIX=	Release-
-PORTREVISION=	12
+PORTREVISION=	13
 CATEGORIES?=	graphics multimedia
 
 MAINTAINER?=	FreeBSD@Shaneware.biz
diff --git a/graphics/vigra/Makefile b/graphics/vigra/Makefile
index 4d112d3cf4e9..77a869fbf44e 100644
--- a/graphics/vigra/Makefile
+++ b/graphics/vigra/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	vigra
 DISTVERSION=	1.11.0
-PORTREVISION=	8
+PORTREVISION=	9
 CATEGORIES=	graphics
 
 MAINTAINER=	ports@FreeBSD.org
diff --git a/graphics/vips/Makefile b/graphics/vips/Makefile
index 9a5d21a11f62..77f1a621f851 100644
--- a/graphics/vips/Makefile
+++ b/graphics/vips/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	vips
 PORTVERSION=	8.4.5
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	graphics
 MASTER_SITES=	http://www.vips.ecs.soton.ac.uk/supported/${PORTVERSION:R}/
 
diff --git a/math/armadillo/Makefile b/math/armadillo/Makefile
index c977347e8c68..6153189b4360 100644
--- a/math/armadillo/Makefile
+++ b/math/armadillo/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	armadillo
 PORTVERSION=	7.900.1
+PORTREVISION=	1
 CATEGORIES=	math
 MASTER_SITES=	SF/arma
 
diff --git a/math/labplot/Makefile b/math/labplot/Makefile
index 37305b691814..85aefd2a72f2 100644
--- a/math/labplot/Makefile
+++ b/math/labplot/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	labplot
 PORTVERSION=	2.4.0
-PORTREVISION=	1
+PORTREVISION=	2
 DISTVERSIONSUFFIX=-kf5
 CATEGORIES=	math kde
 MASTER_SITES=	KDE/stable/${PORTNAME}/${PORTVERSION}
diff --git a/math/matio/Makefile b/math/matio/Makefile
index fe7d32a3c899..ca111801bf45 100644
--- a/math/matio/Makefile
+++ b/math/matio/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	matio
 PORTVERSION=	1.5.9
+PORTREVISION=	1
 CATEGORIES=	math
 MASTER_SITES=	SF
 
diff --git a/math/octave/Makefile b/math/octave/Makefile
index 8222c24e98e1..7e4f8ad0895f 100644
--- a/math/octave/Makefile
+++ b/math/octave/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	octave
 PORTVERSION=	4.0.3
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	math
 MASTER_SITES=	GNU
 
diff --git a/math/pdal/Makefile b/math/pdal/Makefile
index 618f425c224c..de18f2537fcb 100644
--- a/math/pdal/Makefile
+++ b/math/pdal/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	pdal
 PORTVERSION=	1.4.0
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	math databases graphics
 
 MAINTAINER=	lbartoletti@tuxfamily.org
diff --git a/math/scilab/Makefile b/math/scilab/Makefile
index e6e16ade4cb1..f8c0a1ce9af9 100644
--- a/math/scilab/Makefile
+++ b/math/scilab/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	scilab
 PORTVERSION=	5.5.2
-PORTREVISION=	7
+PORTREVISION=	8
 CATEGORIES=	math cad java
 MASTER_SITES=	http://www.scilab.org/download/${PORTVERSION}/
 DISTFILES=	${DISTNAME}-src${EXTRACT_SUFX}
diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile
index 609e99440140..d295a922a1ce 100644
--- a/science/InsightToolkit/Makefile
+++ b/science/InsightToolkit/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	InsightToolkit
 PORTVERSION=	4.11.0
+PORTREVISION=	1
 CATEGORIES=	science biology
 MASTER_SITES=	SF/itk/itk/${ITK_VER}
 
diff --git a/science/cdo/Makefile b/science/cdo/Makefile
index c5ff553670a7..7660f8e7e1fa 100644
--- a/science/cdo/Makefile
+++ b/science/cdo/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	cdo
 PORTVERSION=	1.8.2
+PORTREVISION=	1
 CATEGORIES=	science
 MASTER_SITES=	https://code.zmaw.de/attachments/download/14686/ \
 		LOCAL/sunpoet
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index b69d8106e01e..d95d0e5e001f 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	cgnslib
 DISTVERSION=	3.2.1
-PORTREVISION=	8
+PORTREVISION=	9
 PORTEPOCH=	1
 CATEGORIES=	science
 MASTER_SITES=	SF/cgns/${PORTNAME}_${PORTVERSION:R}/
diff --git a/science/ecs/Makefile b/science/ecs/Makefile
index b76e6591d18b..b00e17bf2afa 100644
--- a/science/ecs/Makefile
+++ b/science/ecs/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	ecs
 PORTVERSION=	2.0.4
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 MASTER_SITES=	http://code-saturne.org/releases/
 
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index d24518414663..a32e8dfd02ce 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	fvm
 PORTVERSION=	0.15.5
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	science parallel
 MASTER_SITES=	http://code-saturne.org/releases/
 
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index 24c041c47eab..461851fc6802 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	gnudatalanguage
 DISTVERSION=	0.9.7
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	science lang
 MASTER_SITES=	SF/${PORTNAME}/gdl/${PORTVERSION}
 .if defined(BUILD_PYTHON_MODULE)
diff --git a/science/h5utils/Makefile b/science/h5utils/Makefile
index 9ed5b6a089c5..1372cadc24e7 100644
--- a/science/h5utils/Makefile
+++ b/science/h5utils/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	h5utils
 PORTVERSION=	1.12.1
-PORTREVISION=	6
+PORTREVISION=	7
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/${PORTNAME}/
 
diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile
index ad17454b033a..3be62ea1126b 100644
--- a/science/hdf5/Makefile
+++ b/science/hdf5/Makefile
@@ -2,14 +2,12 @@
 # $FreeBSD$
 
 PORTNAME=	hdf5
-PORTVERSION=	1.10.0
-PORTREVISION=	3
+PORTVERSION=	1.10.1
 CATEGORIES=	science archivers graphics
 MASTER_SITES=	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
 MASTER_SITES=	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
 		ftp://support.hdfgroup.org/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
 		LOCAL/sunpoet
-DISTNAME=	${PORTNAME}-${PORTVERSION}-patch1
 
 MAINTAINER=	sunpoet@FreeBSD.org
 COMMENT=	Hierarchical Data Format library (from NCSA)
@@ -19,6 +17,9 @@ LICENSE_FILE=	${WRKSRC}/COPYING
 
 CONFLICTS_INSTALL=	hdf-4.[0-9]* hdf5-1.6.[0-9]*
 
+NOT_FOR_ARCHS=	sparc64
+NOT_FOR_ARCHS_REASON=	does not compile
+
 OPTIONS_DEFINE=	DEBUG EXAMPLES FORTRAN SZIP
 OPTIONS_DEFAULT=SZIP
 OPTIONS_SUB=	yes
@@ -36,9 +37,6 @@ USES=		libtool localbase tar:bzip2
 
 PORTEXAMPLES=	*
 
-NOT_FOR_ARCHS=	sparc64
-NOT_FOR_ARCHS_REASON=	does not compile
-
 DEBUG_CONFIGURE_OFF=	--enable-build-mode=production
 DEBUG_CONFIGURE_ON=	--enable-build-mode=debug
 FORTRAN_CONFIGURE_ENABLE=	fortran
diff --git a/science/hdf5/distinfo b/science/hdf5/distinfo
index ced9796089c3..b07a769099ce 100644
--- a/science/hdf5/distinfo
+++ b/science/hdf5/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1479825372
-SHA256 (hdf5-1.10.0-patch1.tar.bz2) = f772264dd853dceb18855418a81c63c9cdcca7bcd075b9c54eb516af006fdfba
-SIZE (hdf5-1.10.0-patch1.tar.bz2) = 11233647
+TIMESTAMP = 1495553545
+SHA256 (hdf5-1.10.1.tar.bz2) = 9c5ce1e33d2463fb1a42dd04daacbc22104e57676e2204e3d66b1ef54b88ebf2
+SIZE (hdf5-1.10.1.tar.bz2) = 11769617
diff --git a/science/hdf5/pkg-plist b/science/hdf5/pkg-plist
index ec0fc79f707c..2f59677fd82b 100644
--- a/science/hdf5/pkg-plist
+++ b/science/hdf5/pkg-plist
@@ -68,6 +68,7 @@ include/H5IntType.h
 include/H5Ipublic.h
 include/H5LDpublic.h
 include/H5LTpublic.h
+include/H5LaccProp.h
 include/H5Library.h
 include/H5Location.h
 include/H5Lpublic.h
@@ -123,28 +124,45 @@ include/H5version.h
 include/hdf5.h
 %%FORTRAN%%include/hdf5.mod
 include/hdf5_hl.h
+%%FORTRAN%%include/tstds.mod
+%%FORTRAN%%include/tstds_tests.mod
+%%FORTRAN%%include/tstimage.mod
+%%FORTRAN%%include/tstimage_tests.mod
+%%FORTRAN%%include/tstlite.mod
+%%FORTRAN%%include/tstlite_tests.mod
+%%FORTRAN%%include/tsttable.mod
+%%FORTRAN%%include/tsttable_tests.mod
+lib/libdynlib1.so
+lib/libdynlib2.so
+lib/libdynlib3.so
+lib/libdynlib4.so
+lib/libdynlibadd.so
+lib/libdynlibdiff.so
+lib/libdynlibdump.so
+lib/libdynlibls.so
+lib/libdynlibvers.so
 lib/libhdf5.a
 lib/libhdf5.settings
 lib/libhdf5.so
-lib/libhdf5.so.100
-lib/libhdf5.so.100.0.1
+lib/libhdf5.so.101
+lib/libhdf5.so.101.0.0
 lib/libhdf5_cpp.a
 lib/libhdf5_cpp.so
-lib/libhdf5_cpp.so.100
-lib/libhdf5_cpp.so.100.0.0
+lib/libhdf5_cpp.so.101
+lib/libhdf5_cpp.so.101.0.0
 %%FORTRAN%%lib/libhdf5_fortran.a
 %%FORTRAN%%lib/libhdf5_fortran.so
 %%FORTRAN%%lib/libhdf5_fortran.so.100
-%%FORTRAN%%lib/libhdf5_fortran.so.100.0.1
+%%FORTRAN%%lib/libhdf5_fortran.so.100.1.0
 lib/libhdf5_hl.a
 lib/libhdf5_hl.so
 lib/libhdf5_hl.so.100
-lib/libhdf5_hl.so.100.0.0
+lib/libhdf5_hl.so.100.0.1
 lib/libhdf5_hl_cpp.a
 lib/libhdf5_hl_cpp.so
 lib/libhdf5_hl_cpp.so.100
-lib/libhdf5_hl_cpp.so.100.0.0
+lib/libhdf5_hl_cpp.so.100.1.0
 %%FORTRAN%%lib/libhdf5hl_fortran.a
 %%FORTRAN%%lib/libhdf5hl_fortran.so
 %%FORTRAN%%lib/libhdf5hl_fortran.so.100
-%%FORTRAN%%lib/libhdf5hl_fortran.so.100.0.0
+%%FORTRAN%%lib/libhdf5hl_fortran.so.100.0.1
diff --git a/science/meep/Makefile b/science/meep/Makefile
index 8018745f16d5..886fdc97af64 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	meep
 PORTVERSION=	1.2.1
-PORTREVISION=	6
+PORTREVISION=	7
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/meep/
 
diff --git a/science/minc2/Makefile b/science/minc2/Makefile
index 83e0768b55b8..61d470c00e37 100644
--- a/science/minc2/Makefile
+++ b/science/minc2/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	minc
 PORTVERSION=	2.2.00
 DISTVERSIONPREFIX=	release-
-PORTREVISION=	4
+PORTREVISION=	5
 PORTEPOCH=	1
 CATEGORIES=	science biology
 PKGNAMESUFFIX=	2
diff --git a/science/mpb/Makefile b/science/mpb/Makefile
index 21e07a688714..bb6a3982c693 100644
--- a/science/mpb/Makefile
+++ b/science/mpb/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	mpb
 PORTVERSION=	1.5
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/mpb/
 
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
index 4eee8c9d8bb5..4abc47b9141b 100644
--- a/science/netcdf/Makefile
+++ b/science/netcdf/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	netcdf
 PORTVERSION=	4.4.1.1
+PORTREVISION=	1
 CATEGORIES=	science
 MASTER_SITES=	http://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
 		ftp://ftp.unidata.ucar.edu/pub/netcdf/ \
diff --git a/science/paraview/Makefile b/science/paraview/Makefile
index ee39588e848a..29072cbf33c9 100644
--- a/science/paraview/Makefile
+++ b/science/paraview/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	paraview
 PORTVERSION=	5.2.0
+PORTREVISION=	1
 CATEGORIES=	science graphics
 MASTER_SITES=	http://www.paraview.org/files/v${VERMAJORMINOR}/
 DISTNAME=	ParaView-v${PORTVERSION}
diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile
index 87e1ddb4988e..37d6be8e27c0 100644
--- a/science/py-h5py/Makefile
+++ b/science/py-h5py/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	h5py
 PORTVERSION=	2.6.0
+PORTREVISION=	1
 CATEGORIES=	science python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile
index cd94b82f7488..e033ad69885f 100644
--- a/science/py-netCDF4/Makefile
+++ b/science/py-netCDF4/Makefile
@@ -5,6 +5,7 @@ PORTNAME=	netCDF4
 PORTVERSION=	1.2.7
 DISTVERSIONPREFIX=	v
 DISTVERSIONSUFFIX=	rel
+PORTREVISION=	1
 CATEGORIES=	science python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/science/silo/Makefile b/science/silo/Makefile
index 38cb72c0b13d..fb0195e520ff 100644
--- a/science/silo/Makefile
+++ b/science/silo/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	silo
 PORTVERSION=	4.10.2
-PORTREVISION=	2
+PORTREVISION=	3
 DISTVERSIONSUFFIX=	-bsd
 CATEGORIES=	science
 MASTER_SITES=	http://wci.llnl.gov/content/assets/docs/simulation/computer-codes/${PORTNAME}/silo-${PORTVERSION}/
diff --git a/sysutils/slurm-wlm/Makefile b/sysutils/slurm-wlm/Makefile
index 6e33c70d8d5f..4451da655fc9 100644
--- a/sysutils/slurm-wlm/Makefile
+++ b/sysutils/slurm-wlm/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	slurm
 PORTVERSION=	16.05.9
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	sysutils
 MASTER_SITES=	http://www.schedmd.com/download/latest/ \
 		http://www.schedmd.com/download/archive/ \