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authorJason W. Bacon <jwb@FreeBSD.org>2021-09-11 07:29:47 -0500
committerJason W. Bacon <jwb@FreeBSD.org>2021-09-11 07:29:47 -0500
commit696f6acf5df455dddd38a7b023820f5eddcddc60 (patch)
tree94ecd9462aaa523aaa173c77d4341cc950f8de12
parentgraphics/qgis: Update to 3.20.3 (diff)
biology/jellyfish: Fix unused open mode variable
PR: 258397 Reported by: dim
-rw-r--r--biology/jellyfish/Makefile1
-rw-r--r--biology/jellyfish/files/patch-include_jellyfish_dumper.hpp11
2 files changed, 12 insertions, 0 deletions
diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile
index 9937ac96c1b2..4079f92b3c4f 100644
--- a/biology/jellyfish/Makefile
+++ b/biology/jellyfish/Makefile
@@ -1,6 +1,7 @@
PORTNAME= Jellyfish
DISTVERSIONPREFIX= v
DISTVERSION= 2.3.0
+PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/jellyfish/files/patch-include_jellyfish_dumper.hpp b/biology/jellyfish/files/patch-include_jellyfish_dumper.hpp
new file mode 100644
index 000000000000..2e064ad17f08
--- /dev/null
+++ b/biology/jellyfish/files/patch-include_jellyfish_dumper.hpp
@@ -0,0 +1,11 @@
+--- include/jellyfish/dumper.hpp.orig 2021-09-11 12:09:13 UTC
++++ include/jellyfish/dumper.hpp
+@@ -54,7 +54,7 @@ class dumper_t { (protected)
+ }
+ file_names_.push_back(name.str());
+
+- out.open(name.str().c_str());
++ out.open(name.str().c_str(), mode);
+ if(out.fail())
+ throw ErrorWriting(err::msg() << "'" << name.str() << "': "
+ << "Can't open file for writing" << err::no);