- Upgrade to 0.9.5

- Switch to the options framework.

12 files changed, 474 insertions, 571 deletions

diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index f24ad3e8dded..41c94480e058 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	gnudatalanguage
-DISTVERSION=	0.9.4
-PORTREVISION=	12
+DISTVERSION=	0.9.5
 CATEGORIES=	science lang
 MASTER_SITES=	SF/${PORTNAME}/gdl/${DISTVERSION}
 .if defined(BUILD_PYTHON_MODULE)
@@ -16,33 +15,20 @@ COMMENT?=	GDL, a free IDL compatible incremental compiler
 
 LICENSE=	GPLv2
 
-#---------------------------------------------------------------------------
-# You may define these options:
-#
-# - WITHOUT_GRAPHICSMAGICK:	remove GraphicsMagick support
-# - WITHOUT_HDF5:		remove HDF5 support
-# - WITHOUT_NETCDF:		remove netCDF support
-# - WITHOUT_HDF:		remove HDF 4 suppport (conflict with netCDF)
-# - WITHOUT_PYTHON:		don't build the interface to python
-# - WITHOUT_FFTW3:		remove FFTW (faster fft routine than GSL)
-# - WITHOUT_EIGEN		remove Eigen support (boost performance)
-# - WITHOUT_UDUNITS		remove unit conversion in IMSL_CONSTANT
-#
-#---------------------------------------------------------------------------
-
 LIB_DEPENDS+=	libplplotd.so:${PORTSDIR}/math/plplot	\
+		libpng15.so:${PORTSDIR}/graphics/png	\
 		libps.so:${PORTSDIR}/print/pslib	\
 		libgsl.so:${PORTSDIR}/math/gsl
 
 USE_WX=		2.8
 WX_UNICODE=	yes
-USE_XORG=	x11
-USES=		pkgconfig cmake:outsource dos2unix compiler:gcc-c++11-lib
+USE_XORG=	x11 sm ice xext
+USES=		cmake:outsource compiler:gcc-c++11-lib dos2unix ncurses pkgconfig readline
 
 # Disable ncurses and readline from ports
 # Disable ImageMagick (does'nt work with plplot because dynamic drivers
 #	are enabled by default)
-# TODO: add a slave port for mpich - ATM just deactivate its support.
+# TODO: add a slave port for mpich
 CMAKE_ARGS=	-DREADLINEDIR:STRING="/usr"		\
 		-DNCURSESDIR:STRING="/usr"		\
 		-DMPICH:BOOL=NO				\
@@ -52,67 +38,62 @@ LDFLAGS+=	${PTHREAD_LIBS} -L${LOCALBASE}/lib
 
 SLAVEDIRS=	science/py-gnudatalanguage
 
-OPTIONS_DEFINE=	EXAMPLES
+OPTIONS_DEFINE=	EIGEN EXAMPLES FFTW GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 MPICH2 NETCDF PYTHON UDUNITS
+OPTIONS_DEFAULT=EIGEN EXAMPLES FFTW GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 NETCDF PYTHON UDUNITS
 
-.if defined(BUILD_PYTHON_MODULE)
-CATEGORIES+=	python
-CMAKE_ARGS+=	-DPYTHON_MODULE:BOOL=YES -DOPENMP:BOOL=NO
-PLIST_FILES=	%%PYTHON_SITELIBDIR%%/GDL.so
-PLIST_SUB+=	MASTER="@comment "
-.else
-CMAKE_ARGS+=	-DPYTHON_MODULE:BOOL=NO
-PLIST_SUB+=	MASTER=""
-.endif
+EIGEN_DESC=	Eigen3 support (boost performance)
+EIGEN_BUILD_DEPENDS=	${LOCALBASE}/libdata/pkgconfig/eigen3.pc:${PORTSDIR}/math/eigen3
+EIGEN_CMAKE_ON=		-DEIGEN3:BOOL=YES
+EIGEN_CMAKE_OFF=	-DEIGEN3:BOOL=NO
 
-.if !defined(WITHOUT_GRAPHICSMAGICK)
-LIB_DEPENDS+=	libGraphicsMagick.so:${PORTSDIR}/graphics/GraphicsMagick
-CMAKE_ARGS+=	-DGRAPHICSMAGICK:BOOL=YES
-.else
-CMAKE_ARGS+=	-DGRAPHICSMAGICK:BOOL=NO
-.endif
+FFTW_LIB_DEPENDS=	libfftw3.so:${PORTSDIR}/math/fftw3		\
+			libfftw3f.so:${PORTSDIR}/math/fftw3-float
+FFTW_CMAKE_ON=		-DFFTW:BOOL=YES
+FFTW_CMAKE_OFF=		-DFFTW:BOOL=NO
 
-.if !defined(WITHOUT_HDF5)
-LIB_DEPENDS+=	libhdf5.so:${PORTSDIR}/science/hdf5
-CMAKE_ARGS+=	-DHDF5:BOOL=YES
-.else
-CMAKE_ARGS+=	-DHDF5:BOOL=NO
-.endif
+GRAPHICSMAGICK_LIB_DEPENDS=	libGraphicsMagick.so:${PORTSDIR}/graphics/GraphicsMagick
+GRAPHICSMAGICK_CMAKE_ON=	-DGRAPHICSMAGICK:BOOL=YES
+GRAPHICSMAGICK_CMAKE_OFF=	-DGRAPHICSMAGICK:BOOL=NO
 
-.if !defined(WITHOUT_NETCDF)
-LIB_DEPENDS+=	libnetcdf.so:${PORTSDIR}/science/netcdf
-CMAKE_ARGS+=	-DNETCDF:BOOL=YES -DHDF:BOOL=NO
-.else
-CMAKE_ARGS+=	-DNETCDF:BOOL=NO
-. if !defined(WITHOUT_HDF)
-LIB_DEPENDS+=	libdf.so.2:${PORTSDIR}/science/hdf
-CMAKE_ARGS+=	-DHDF:BOOL=YES
-. else
-CMAKE_ARGS+=	-DHDF:BOOL=NO
-. endif
-.endif
+GRIB_DESC=		Support GRIB messages
+GRIB_LIB_DEPENDS=	libgrib_api.so:${PORTSDIR}/science/grib_api
+GRIB_CMAKE_ON=		-DGRIB:BOOL=YES
+GRIB_CMAKE_OFF=		-DGRIB:BOOL=NO
 
-.if !defined(WITHOUT_EIGEN)
-BUILD_DEPENDS+=	${LOCALBASE}/libdata/pkgconfig/eigen3.pc:${PORTSDIR}/math/eigen3
-CMAKE_ARGS+=	-DEIGEN3:BOOL=YES
-.else
-CMAKE_ARGS+=	-DEIGEN3:BOOL=NO
-.endif
+HDF5_LIB_DEPENDS=	libhdf5.so:${PORTSDIR}/science/hdf5
+HDF5_CMAKE_ON=		-DHDF5:BOOL=YES
+HDF5_CMAKE_OFF=		-DHDF5:BOOL=NO -DHDF:BOOL=NO
 
-.if !defined(WITHOUT_UDUNITS)
-LIB_DEPENDS+=	libudunits2.so:${PORTSDIR}/science/udunits
-CMAKE_ARGS+=	-DUDUNITS:BOOL=YES
-.else
-CMAKE_ARGS+=	-DUDUNITS:BOOL=NO
-.endif
+LIBPROJ4_DESC=		Support cartographic processes
+LIBPROJ4_LIB_DEPENDS=	libproj4.so:${PORTSDIR}/math/libproj4
+LIBPROJ4_CMAKE_ON=	-DLIBPROJ4:BOOL=YES
+LIBPROJ4_CMAKE_OFF=	-DLIBPROJ4:BOOL=NO
+
+MPICH2_LIB_DEPENDS=	libmpich.so.8:${PORTSDIR}/net/mpich2
+MPICH2_CMAKE_ON=	-DMPICH:BOOL=YES
+MPICH2_CMAKE_OFF=	-DMPICH:BOOL=NO
+
+NETCDF_LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf
+NETCDF_CMAKE_ON=	-DNETCDF:BOOL=YES -DHDF:BOOL=NO
+NETCDF_CMAKE_OFF=	-DNETCDF:BOOL=NO
+
+PYTHON_USES=		python
+PYTHON_BUILD_DEPENDS=	${PYNUMPY}
+PYTHON_RUN_DEPENDS=	${PYNUMPY} \
+			${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib
+PYTHON_CMAKE_ON=	-DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}"
+PYTHON_CMAKE_OFF=	-DPYTHON:BOOL=NO
+
+UDUNITS_LIB_DEPENDS=	libudunits2.so:${PORTSDIR}/science/udunits
+UDUNITS_CMAKE_ON=	-DUDUNITS:BOOL=YES
+UDUNITS_CMAKE_OFF=	-DUDUNITS:BOOL=NO
 
-.if !defined(WITHOUT_PYTHON) || defined(BUILD_PYTHON_MODULE)
-USE_PYTHON=	2
-BUILD_DEPENDS+=	${PYNUMPY}
-RUN_DEPENDS+=	${PYNUMPY} \
-		${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib
-CMAKE_ARGS+=	-DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}"
+.if defined(BUILD_PYTHON_MODULE)
+CATEGORIES+=	python
+CMAKE_ARGS+=	-DPYTHON_MODULE:BOOL=YES -DOPENMP:BOOL=NO
+PLIST=		pkg-plist.pymod
 .else
-CMAKE_ARGS+=	-DPYTHON:BOOL=NO
+CMAKE_ARGS+=	-DPYTHON_MODULE:BOOL=NO
 .endif
 
 .include <bsd.port.pre.mk>
@@ -121,17 +102,10 @@ CMAKE_ARGS+=	-DPYTHON:BOOL=NO
 BROKEN=	Does not build with ancient binutils
 .endif
 
-.if !defined(WITHOUT_FFTW3)
-LIB_DEPENDS+=	libfftw3.so:${PORTSDIR}/math/fftw3		\
-		libfftw3f.so:${PORTSDIR}/math/fftw3-float
-CMAKE_ARGS+=	-DFFTW:BOOL=YES
-.else
-CMAKE_ARGS+=	-DFFTW:BOOL=NO
-.endif
-
 .if defined(BUILD_PYTHON_MODULE)
 do-install:
-	${INSTALL_DATA} ${WRKSRC}/src/.libs/libgdl.so.0 ${PYTHON_SITELIBDIR}/GDL.so
+	${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR}
+	${INSTALL_DATA} ${INSTALL_WRKSRC}/src/libgdl.so ${STAGEDIR}${PYTHON_SITELIBDIR}/GDL.so
 .endif
 
 .if !defined(BUILD_PYTHON_MODULE)
diff --git a/science/gnudatalanguage/distinfo b/science/gnudatalanguage/distinfo
index 03858fa82c46..66ace7c9701f 100644
--- a/science/gnudatalanguage/distinfo
+++ b/science/gnudatalanguage/distinfo
@@ -1,2 +1,2 @@
-SHA256 (gdl-0.9.4.tar.gz) = e18010cd874cad7b1fd8c752e9386571156e1fb066f2d27ecbcc15bbfc9514fa
-SIZE (gdl-0.9.4.tar.gz) = 2191342
+SHA256 (gdl-0.9.5.tar.gz) = cc9635e836b5ea456cad93f8a07d589aed8649668fbd14c4aad22091991137e2
+SIZE (gdl-0.9.5.tar.gz) = 2341992
diff --git a/science/gnudatalanguage/files/patch-CMakeLists.txt b/science/gnudatalanguage/files/patch-CMakeLists.txt
index b85763b8166b..1d57c453c9b9 100644
--- a/science/gnudatalanguage/files/patch-CMakeLists.txt
+++ b/science/gnudatalanguage/files/patch-CMakeLists.txt
@@ -1,33 +1,6 @@
-Includes revisions 1.50 and 1.57 from upstream:
-
-  Fri Jun 13 21:45:44 2014 UTC by gilles-duvert
-  Applied Orion's patch #77
-
-  Mon Sep 1 11:23:18 2014 UTC by alaingdl
-  patch 78 related to change in CMake 3.0
-
-Both patches are required for CMake 3.0+ support.
---- ./CMakeLists.txt.orig	2013-09-28 17:03:32.000000000 +0200
-+++ ./CMakeLists.txt	2013-09-30 16:19:09.000000000 +0200
-@@ -610,13 +610,11 @@
-                   message("-- Found Python executable: ${PYTHON_EXECUTABLE}")
-                 endif()
- 	else()
--		if(PYTHONVERSION)
--			set(PythonLibs_FIND_VERSION ${PYTHONVERSION})
--		else()
--			set(PythonLibs_FIND_VERSION 2)
-+                if(NOT PYTHONVERSION)
-+                        set(PYTHONVERSION 2)
- 		endif()
--		find_package(PythonLibs)
--		include(FindPythonInterp)
-+		find_package(PythonInterp)
-+		find_package(PythonLibs ${PYTHONVERSION})
- 	endif()
- 	set(USE_PYTHON ${PYTHONLIBS_FOUND})
- 	if(PYTHONLIBS_FOUND)
-@@ -752,7 +752,7 @@
+--- CMakeLists.txt.orig	2014-10-09 22:46:06.000000000 +0200
++++ CMakeLists.txt	2014-10-09 22:46:06.000000000 +0200
+@@ -871,7 +871,7 @@
  endif(NOT PYTHON_MODULE)
  
  install(FILES ${CMAKE_SOURCE_DIR}/AUTHORS ${CMAKE_SOURCE_DIR}/README DESTINATION ${CMAKE_INSTALL_PREFIX}/${GDL_DATA_DIR})
diff --git a/science/gnudatalanguage/files/patch-src__base64.hpp b/science/gnudatalanguage/files/patch-src__base64.hpp
index 0da18e077044..e91fb7826acb 100644
--- a/science/gnudatalanguage/files/patch-src__base64.hpp
+++ b/science/gnudatalanguage/files/patch-src__base64.hpp
@@ -1,11 +1,11 @@
---- ./src/base64.hpp.orig	2014-04-08 16:53:53.885118264 +0200
-+++ ./src/base64.hpp	2014-04-08 16:53:54.105117486 +0200
+--- src/base64.hpp.orig	2014-10-10 23:11:19.000000000 +0200
++++ src/base64.hpp	2014-10-10 23:17:21.000000000 +0200
 @@ -147,7 +147,7 @@
  						Warning("base64 decode error: unexpected fill char -- offset read?");
  						return false;
  					}
--					if(!isspace(data[i-1])) {
-+					if(!std::isspace(data[i-1])) {
+-					if(!(isspace(data[i-1]))) {
++					if(!(std::isspace(data[i-1]))) {
  						//cerr << "base 64 decode error: illegal character '" << data[i-1] << "' (0x" << std::hex << (int)data[i-1] << std::dec << ")" << endl;
  						Warning("base 64 decode error: illegal character");
  						return false;
@@ -13,8 +13,8 @@
  						Warning("base64 decode error: unexpected fill char -- offset read?");
  						return false;
  					}
--					if(!isspace(data[i-1])) {
-+					if(!std::isspace(data[i-1])) {
+-					if(!(isspace(data[i-1]))) {
++					if(!(std::isspace(data[i-1]))) {
  						//cerr << "base 64 decode error: illegal character '" << data[i-1] << '\'' << endl;
  						Warning("base 64 decode error: illegal character");
  						return false;
@@ -22,8 +22,8 @@
  					if(fillchar == data[i-1]) {
  						return true;
  					}
--					if(!isspace(data[i-1])) {
-+					if(!std::isspace(data[i-1])) {
+-					if((!isspace(data[i-1]))) {
++					if((!std::isspace(data[i-1]))) {
  						//cerr << "base 64 decode error: illegal character '" << data[i-1] << '\'' << endl;
  						Warning("base 64 decode error: illegal character");
  						return false;
@@ -31,8 +31,8 @@
  					if(fillchar == data[i-1]) {
  						return true;
  					}
--					if(!isspace(data[i-1])) {
-+					if(!std::isspace(data[i-1])) {
+-					if(!(isspace(data[i-1]))) {
++					if(!(std::isspace(data[i-1]))) {
  						//cerr << "base 64 decode error: illegal character '" << data[i-1] << '\'' << endl;
  						Warning("base 64 decode error: illegal character");
  						return false;
diff --git a/science/gnudatalanguage/files/patch-src__basic_fun.cpp b/science/gnudatalanguage/files/patch-src__basic_fun.cpp
index 0dffa910a81e..cb5b8630ba91 100644
--- a/science/gnudatalanguage/files/patch-src__basic_fun.cpp
+++ b/science/gnudatalanguage/files/patch-src__basic_fun.cpp
@@ -1,11 +1,20 @@
---- ./src/basic_fun.cpp.orig	2014-04-08 16:53:53.916118121 +0200
-+++ ./src/basic_fun.cpp	2014-04-08 16:53:54.109117445 +0200
-@@ -6412,7 +6412,7 @@
+--- src/basic_fun.cpp.orig	2014-10-10 23:18:05.000000000 +0200
++++ src/basic_fun.cpp	2014-10-10 23:21:54.000000000 +0200
+@@ -6483,7 +6483,7 @@
        while (p < e) 
        {
          // scheme = 1*[ lowalpha | digit | "+" | "-" | "." ]
--        if (!isalpha(*p) && !isdigit(*p) && *p != '+' && *p != '.' && *p != '-') 
-+        if (!std::isalpha(*p) && !std::isdigit(*p) && *p != '+' && *p != '.' && *p != '-') 
+-        if (!(isalpha(*p)) && !(isdigit(*p)) && (*p != '+') && (*p != '.') && (*p != '-')) 
++        if (!(std::isalpha(*p)) && !(std::isdigit(*p)) && (*p != '+') && (*p != '.') && (*p != '-')) 
          {
            if (e + 1 < ue) goto parse_port;
            else goto just_path;
+@@ -6501,7 +6501,7 @@
+       {
+         // check if the data we get is a port this allows us to correctly parse things like a.com:80
+         p = e + 1;
+-        while (isdigit(*p)) p++;
++        while (std::isdigit(*p)) p++;
+ 	if ((*p == '\0' || *p == '/') && (p - e) < 7) goto parse_port;
+         urlstru->InitTag("SCHEME", DStringGDL(string(s, (e - s))));
+         length -= ++e - s;
diff --git a/science/gnudatalanguage/files/patch-src__gshhs.cpp b/science/gnudatalanguage/files/patch-src__gshhs.cpp
new file mode 100644
index 000000000000..8ad12a6278be
--- /dev/null
+++ b/science/gnudatalanguage/files/patch-src__gshhs.cpp
@@ -0,0 +1,11 @@
+--- src/gshhs.cpp.orig	2014-10-11 19:11:00.000000000 +0200
++++ src/gshhs.cpp	2014-10-11 19:37:17.000000000 +0200
+@@ -175,7 +175,7 @@
+         double ss = h.south * GSHHS_SCL;
+         double nn = h.north * GSHHS_SCL;
+         char source = (src == 1) ? 'W' : 'C'; // Either WVS or CIA (WDBII) pedigree 
+-        if ( river ) source = tolower( (int) source ); // Lower case c means river-lake 
++        if ( river ) source = std::tolower( (int) source ); // Lower case c means river-lake 
+         int line = (h.area) ? 0 : 1; // Either Polygon (0) or Line (1) (if no area) 
+ 
+ 
diff --git a/science/gnudatalanguage/files/patch-src__gsl_fun.cpp b/science/gnudatalanguage/files/patch-src__gsl_fun.cpp
index 96096d93a753..eb1bb5138824 100644
--- a/science/gnudatalanguage/files/patch-src__gsl_fun.cpp
+++ b/science/gnudatalanguage/files/patch-src__gsl_fun.cpp
@@ -1,6 +1,6 @@
---- ./src/gsl_fun.cpp.orig	2014-04-08 16:53:53.901118160 +0200
-+++ ./src/gsl_fun.cpp	2014-04-08 16:53:54.111117458 +0200
-@@ -3378,7 +3378,7 @@
+--- src/gsl_fun.cpp.orig	2014-10-09 22:55:52.000000000 +0200
++++ src/gsl_fun.cpp	2014-10-09 22:55:52.000000000 +0200
+@@ -3183,7 +3183,7 @@
        e->AssureScalarPar<DStringGDL>(0, tmpname);    
        name.reserve(tmpname.length());
        for (string::iterator it = tmpname.begin(); it < tmpname.end(); it++) 
@@ -9,12 +9,3 @@
      }
  
  #ifdef USE_UDUNITS
-@@ -3889,7 +3889,7 @@
- 	  res[j] = sign * sphPlm.val;
- 	*/
- 	res[j] = sign * gsl_sf_legendre_sphPlm(l, abs(m), cos(theta[j * step_theta]));
--	res[j] *= exp(complex<T_phi>(0., m * phi[j * step_phi]));
-+	res[j] *= T_res(std::exp(complex<T_phi>(0., m * phi[j * step_phi])));
-       }
-   }
-   template <class T_phi, class T_res>
diff --git a/science/gnudatalanguage/files/patch-src_plotting.cpp b/science/gnudatalanguage/files/patch-src_plotting.cpp
deleted file mode 100644
index f978d76be8a8..000000000000
--- a/science/gnudatalanguage/files/patch-src_plotting.cpp
+++ /dev/null
@@ -1,56 +0,0 @@
---- src/plotting.cpp.orig	2013-09-22 05:09:11.000000000 +0200
-+++ src/plotting.cpp	2013-10-11 10:55:14.000000000 +0200
-@@ -1891,7 +1891,7 @@
-       DFloatGDL* charthickVect=e->GetKWAs<DFloatGDL>( charthickIx );
-       charthick=(*charthickVect)[0];
-     }
--    a->wid(charthick);
-+    a->width(charthick);
-   }
- 
-   void gdlSetAxisCharsize(EnvT *e, GDLGStream *a, string axis)
-@@ -1919,7 +1919,7 @@
- 
-     e->AssureFloatScalarKWIfPresent("THICK", thick);
-     if ( thick<=0.0 ) thick=1.0;
--    a->wid(static_cast<PLINT>(floor(thick-0.5)));
-+    a->width(static_cast<PLINT>(floor(thick-0.5)));
-   }
- 
-   //LINESTYLE
-@@ -2936,7 +2936,7 @@
-         a->smaj((PLFLT)OtherAxisSizeInMm, 1.0); //set base ticks to default 0.02 viewport converted to mm.
-         a->smin((PLFLT)OtherAxisSizeInMm/2.0,1.0); //idem min (plplt defaults)
-         //thick for box and ticks.
--        a->wid(Thick);
-+        a->width(Thick);
-         //ticks or grid eventually with style and length:
-         if (abs(TickLen)<1e-6) Opt=""; else Opt="st"; //remove ticks if ticklen=0
-         if (TickLen<0) {Opt+="i"; TickLen=-TickLen;}
-@@ -2981,7 +2981,7 @@
-         else if (axis=="Y") a->box("", 0.0, 0 , Opt.c_str(), 0.0, 0);
-       }
-       //reset charsize & thick
--      a->wid(1);
-+      a->width(1);
-       a->sizeChar(1.0);
-     }
- 	return 0;
-@@ -3124,7 +3124,7 @@
-         a->smaj((PLFLT)OtherAxisSizeInMm, 1.0); //set base ticks to default 0.02 viewport converted to mm.
-         a->smin((PLFLT)OtherAxisSizeInMm/2.0,1.0); //idem min (plplt defaults)
-         //thick for box and ticks.
--        a->wid(Thick);
-+        a->width(Thick);
-         //ticks or grid eventually with style and length:
-         if (abs(TickLen)<1e-6) Opt=""; else Opt="st"; //remove ticks if ticklen=0
-         if (TickLen<0) {Opt+="i"; TickLen=-TickLen;}
-@@ -3149,7 +3149,7 @@
-         else if (axis=="Z") a->box3("","",0,0,"","",0,0, Opt.c_str(), "", TickInterval, Minor);
-       }
-       //reset charsize & thick
--      a->wid(1);
-+      a->width(1);
-       a->sizeChar(1.0);
-     }
- 	return 0;
diff --git a/science/gnudatalanguage/files/patch-src_plotting_contour.cpp b/science/gnudatalanguage/files/patch-src_plotting_contour.cpp
deleted file mode 100644
index ef166d8852d8..000000000000
--- a/science/gnudatalanguage/files/patch-src_plotting_contour.cpp
+++ /dev/null
@@ -1,20 +0,0 @@
---- src/plotting_contour.cpp.orig	2013-09-17 22:13:27.000000000 +0200
-+++ src/plotting_contour.cpp	2013-10-11 10:35:22.000000000 +0200
-@@ -728,7 +728,7 @@
-               actStream->pat(1,&ori,&spa);
- 
-               if (docolors) actStream->Color ( ( *colors )[i%colors->N_Elements ( )], decomposed, (PLINT)colorindex_table_0_color );
--              if (dothick) actStream->wid ( ( *thick )[i%thick->N_Elements ( )]);
-+              if (dothick) actStream->width ( ( *thick )[i%thick->N_Elements ( )]);
-               if (dostyle) gdlLineStyle(actStream, ( *style )[i%style->N_Elements ( )]);
-               actStream->shade( map, xEl, yEl, isLog?doIt:NULL, xStart, xEnd, yStart, yEnd,
-               clevel[i], clevel[i+1],
-@@ -811,7 +811,7 @@
-               actStream->stransform(gdl3dTo2dTransformContour, &Data3d);
-             }
-             if (docolors) actStream->Color ( ( *colors )[i%colors->N_Elements ( )], decomposed, 2);
--            if (dothick) actStream->wid ( ( *thick )[i%thick->N_Elements ( )]);
-+            if (dothick) actStream->width ( ( *thick )[i%thick->N_Elements ( )]);
-             if (dostyle) gdlLineStyle(actStream, ( *style )[i%style->N_Elements ( )]);
-             if (dolabels) actStream->setcontlabelparam ( LABELOFFSET, (PLFLT) label_size, LABELSPACING,
-                                                         (PLINT)(*labels)[i%labels->N_Elements()] );
diff --git a/science/gnudatalanguage/files/patch-src_plotting_xyouts.cpp b/science/gnudatalanguage/files/patch-src_plotting_xyouts.cpp
deleted file mode 100644
index 6b6437f1cf6f..000000000000
--- a/science/gnudatalanguage/files/patch-src_plotting_xyouts.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/plotting_xyouts.cpp.orig	2013-10-11 11:26:06.000000000 +0200
-+++ src/plotting_xyouts.cpp	2013-10-11 11:27:24.000000000 +0200
-@@ -339,7 +339,7 @@
-         //plot!
-         if (docharsize) actStream->sizeChar(( *size )[i%size->N_Elements ( )]);
-         if (docolor) actStream->Color ( ( *color )[i%color->N_Elements ( )], decomposed, 2);
--        if (docharthick) actStream->wid ( ( *charthick )[i%charthick->N_Elements ( )]);
-+        if (docharthick) actStream->width ( ( *charthick )[i%charthick->N_Elements ( )]);
-         //orientation word is not orientation page depending on axes increment direction [0..1] vs. [1..0]
-         PLFLT oriD=(( *orientation )[i%orientation->N_Elements ( )]); //ori DEVICE
-         PLFLT oriW=oriD; //ori WORLD
diff --git a/science/gnudatalanguage/pkg-plist b/science/gnudatalanguage/pkg-plist
index 425de52293b5..0ba43fc9f675 100644
--- a/science/gnudatalanguage/pkg-plist
+++ b/science/gnudatalanguage/pkg-plist
@@ -1,344 +1,375 @@
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+%%DATADIR%%/lib/dicom/gdlffdicom__test.pro
+%%DATADIR%%/lib/dicom/gdlffdicom_copy_lun.pro
+%%DATADIR%%/lib/dicom/gdlffdicom_date.pro
+%%DATADIR%%/lib/dicom/gdlffdicom_time.pro
+%%DATADIR%%/lib/dicom/gdlffdicom_trim.pro
+%%DATADIR%%/lib/dist.pro
+%%DATADIR%%/lib/doc_library.pro
+%%DATADIR%%/lib/envi/read_envi_file.pro
+%%DATADIR%%/lib/envi/test_write_read_envi.pro
+%%DATADIR%%/lib/envi/write_envi_file.pro
+%%DATADIR%%/lib/escape_special_char.pro
+%%DATADIR%%/lib/factorial.pro
+%%DATADIR%%/lib/file_basename_old.pro
+%%DATADIR%%/lib/file_copy.pro
+%%DATADIR%%/lib/file_delete.pro
+%%DATADIR%%/lib/file_dirname_old.pro
+%%DATADIR%%/lib/file_expand_path.pro
+%%DATADIR%%/lib/file_lines.pro
+%%DATADIR%%/lib/file_which.pro
+%%DATADIR%%/lib/filepath.pro
+%%DATADIR%%/lib/findex.pro
+%%DATADIR%%/lib/findfile.pro
+%%DATADIR%%/lib/get_login_info.pro
+%%DATADIR%%/lib/helpform.pro
+%%DATADIR%%/lib/hist_2d.pro
+%%DATADIR%%/lib/hist_equal.pro
+%%DATADIR%%/lib/hist_nd.pro
+%%DATADIR%%/lib/identity.pro
+%%DATADIR%%/lib/idl_validname.pro
+%%DATADIR%%/lib/image_statistics.pro
+%%DATADIR%%/lib/imsl_erf.pro
+%%DATADIR%%/lib/imsl_zerosys.pro
+%%DATADIR%%/lib/interpol.pro
+%%DATADIR%%/lib/ishft.pro
+%%DATADIR%%/lib/kurtosis.pro
+%%DATADIR%%/lib/la_invert.pro
+%%DATADIR%%/lib/last_item.pro
+%%DATADIR%%/lib/lmgr.pro
+%%DATADIR%%/lib/loadct.pro
+%%DATADIR%%/lib/map_clip_set.pro
+%%DATADIR%%/lib/matrix_multiply.pro
+%%DATADIR%%/lib/mean.pro
+%%DATADIR%%/lib/meanabsdev.pro
+%%DATADIR%%/lib/moment.pro
+%%DATADIR%%/lib/norm.pro
+%%DATADIR%%/lib/online_help.pro
+%%DATADIR%%/lib/oploterr.pro
+%%DATADIR%%/lib/path_sep.pro
+%%DATADIR%%/lib/ploterr.pro
+%%DATADIR%%/lib/poly.pro
+%%DATADIR%%/lib/poly_area.pro
+%%DATADIR%%/lib/popd.pro
+%%DATADIR%%/lib/primes.pro
+%%DATADIR%%/lib/printd.pro
+%%DATADIR%%/lib/pushd.pro
+%%DATADIR%%/lib/py_plot.pro
+%%DATADIR%%/lib/py_print.pro
+%%DATADIR%%/lib/query_bmp.pro
+%%DATADIR%%/lib/query_dicom.pro
+%%DATADIR%%/lib/query_gif.pro
+%%DATADIR%%/lib/query_image.pro
+%%DATADIR%%/lib/query_jpeg.pro
+%%DATADIR%%/lib/query_pict.pro
+%%DATADIR%%/lib/query_png.pro
+%%DATADIR%%/lib/query_ppm.pro
+%%DATADIR%%/lib/query_tiff.pro
+%%DATADIR%%/lib/read_ascii.pro
+%%DATADIR%%/lib/read_binary.pro
+%%DATADIR%%/lib/read_bmp.pro
+%%DATADIR%%/lib/read_dicom.pro
+%%DATADIR%%/lib/read_gif.pro
+%%DATADIR%%/lib/read_image.pro
+%%DATADIR%%/lib/read_jpeg.pro
+%%DATADIR%%/lib/read_jpeg2000.pro
+%%DATADIR%%/lib/read_pict.pro
+%%DATADIR%%/lib/read_png.pro
+%%DATADIR%%/lib/read_tiff.pro
+%%DATADIR%%/lib/read_xwd.pro
+%%DATADIR%%/lib/real_part.pro
+%%DATADIR%%/lib/restore.pro
+%%DATADIR%%/lib/rot.pro
+%%DATADIR%%/lib/rstrpos.pro
+%%DATADIR%%/lib/save.pro
+%%DATADIR%%/lib/showfont.pro
+%%DATADIR%%/lib/skewness.pro
+%%DATADIR%%/lib/skip_lun.pro
+%%DATADIR%%/lib/smooth.pro
+%%DATADIR%%/lib/spl_init_old.pro
+%%DATADIR%%/lib/spl_interp_old.pro
+%%DATADIR%%/lib/standardize.pro
+%%DATADIR%%/lib/stddev.pro
+%%DATADIR%%/lib/str_sep.pro
+%%DATADIR%%/lib/strmatch.pro
+%%DATADIR%%/lib/strsplit.pro
+%%DATADIR%%/lib/swap_endian.pro
+%%DATADIR%%/lib/swap_endian_inplace.pro
+%%DATADIR%%/lib/template.pro
+%%DATADIR%%/lib/template_blank.pro
+%%DATADIR%%/lib/tic.pro
+%%DATADIR%%/lib/toc.pro
+%%DATADIR%%/lib/trace.pro
+%%DATADIR%%/lib/tvscl.pro
+%%DATADIR%%/lib/uniq.pro
+%%DATADIR%%/lib/value_locate.pro
+%%DATADIR%%/lib/variance.pro
+%%DATADIR%%/lib/wmenu.pro
+%%DATADIR%%/lib/write_bmp.pro
+%%DATADIR%%/lib/write_gif.pro
+%%DATADIR%%/lib/write_image.pro
+%%DATADIR%%/lib/write_jpeg.pro
+%%DATADIR%%/lib/write_pict.pro
+%%DATADIR%%/lib/write_png.pro
+%%DATADIR%%/lib/xmanager.pro
+%%DATADIR%%/lib/zenity_check.pro
diff --git a/science/gnudatalanguage/pkg-plist.pymod b/science/gnudatalanguage/pkg-plist.pymod
new file mode 100644
index 000000000000..cddc359fde6d
--- /dev/null
+++ b/science/gnudatalanguage/pkg-plist.pymod
@@ -0,0 +1 @@
+%%PYTHON_SITELIBDIR%%/GDL.so