- Add p5-Bio-Coordinate 1.007001

Bio::Coordinate classes are used for working with various biological coordinate
systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples.

WWW: http://search.cpan.org/dist/Bio-Coordinate/

5 files changed, 58 insertions, 0 deletions

diff --git a/biology/Makefile b/biology/Makefile
index 7f4804d2445d..de97395ca4f6 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -58,6 +58,7 @@
     SUBDIR += njplot
     SUBDIR += p5-AcePerl
     SUBDIR += p5-Bio-ASN1-EntrezGene
+    SUBDIR += p5-Bio-Coordinate
     SUBDIR += p5-Bio-Das
     SUBDIR += p5-Bio-Das-Lite
     SUBDIR += p5-Bio-GFF3
diff --git a/biology/p5-Bio-Coordinate/Makefile b/biology/p5-Bio-Coordinate/Makefile
new file mode 100644
index 000000000000..96aa405fa950
--- /dev/null
+++ b/biology/p5-Bio-Coordinate/Makefile
@@ -0,0 +1,24 @@
+# Created by: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME=	Bio-Coordinate
+PORTVERSION=	1.007001
+CATEGORIES=	biology perl5
+MASTER_SITES=	CPAN
+PKGNAMEPREFIX=	p5-
+
+MAINTAINER=	sunpoet@FreeBSD.org
+COMMENT=	Modules for working with biological coordinates
+
+LICENSE=	ART10 GPLv1
+LICENSE_COMB=	dual
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+BUILD_DEPENDS=	p5-BioPerl>=1.007000:biology/p5-BioPerl
+RUN_DEPENDS:=	${BUILD_DEPENDS}
+
+NO_ARCH=	yes
+USE_PERL5=	configure
+USES=		perl5
+
+.include <bsd.port.mk>
diff --git a/biology/p5-Bio-Coordinate/distinfo b/biology/p5-Bio-Coordinate/distinfo
new file mode 100644
index 000000000000..a98d3860fe03
--- /dev/null
+++ b/biology/p5-Bio-Coordinate/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1482042798
+SHA256 (Bio-Coordinate-1.007001.tar.gz) = 63c0a652ec60a2a905d71c85c08b96fcfb12fc784cac8a5d029eb9647d45d619
+SIZE (Bio-Coordinate-1.007001.tar.gz) = 44111
diff --git a/biology/p5-Bio-Coordinate/pkg-descr b/biology/p5-Bio-Coordinate/pkg-descr
new file mode 100644
index 000000000000..d0c3edf7db4a
--- /dev/null
+++ b/biology/p5-Bio-Coordinate/pkg-descr
@@ -0,0 +1,4 @@
+Bio::Coordinate classes are used for working with various biological coordinate
+systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples.
+
+WWW: http://search.cpan.org/dist/Bio-Coordinate/
diff --git a/biology/p5-Bio-Coordinate/pkg-plist b/biology/p5-Bio-Coordinate/pkg-plist
new file mode 100644
index 000000000000..5b2449684b98
--- /dev/null
+++ b/biology/p5-Bio-Coordinate/pkg-plist
@@ -0,0 +1,26 @@
+%%SITE_PERL%%/Bio/Coordinate.pm
+%%SITE_PERL%%/Bio/Coordinate/Chain.pm
+%%SITE_PERL%%/Bio/Coordinate/Collection.pm
+%%SITE_PERL%%/Bio/Coordinate/ExtrapolatingPair.pm
+%%SITE_PERL%%/Bio/Coordinate/GeneMapper.pm
+%%SITE_PERL%%/Bio/Coordinate/Graph.pm
+%%SITE_PERL%%/Bio/Coordinate/MapperI.pm
+%%SITE_PERL%%/Bio/Coordinate/Pair.pm
+%%SITE_PERL%%/Bio/Coordinate/Result.pm
+%%SITE_PERL%%/Bio/Coordinate/Result/Gap.pm
+%%SITE_PERL%%/Bio/Coordinate/Result/Match.pm
+%%SITE_PERL%%/Bio/Coordinate/ResultI.pm
+%%SITE_PERL%%/Bio/Coordinate/Utils.pm
+%%PERL5_MAN3%%/Bio::Coordinate.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Chain.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Collection.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::ExtrapolatingPair.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::GeneMapper.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Graph.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::MapperI.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Pair.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Result.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Result::Gap.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Result::Match.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::ResultI.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Utils.3.gz