diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2025-01-16 06:35:49 -0600 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2025-01-16 06:35:49 -0600 |
| commit | 25e2eac767b4fbfe69d5307fc027c5cfb8f44b77 (patch) | |
| tree | d808ec6d424effef2f460d497e97cf9b9d335224 | |
| parent | Revert "audio/musescore: update 4.2.1 → 4.4.4" (diff) | |
biology/bbmap: Update to 39.15
Add bitbucket link to WWW for some level of change tracking
Release highlights:
https://bitbucket.org/berkeleylab/jgi-bbtools/commits/branch/master
Reported by: portscout
| -rw-r--r-- | biology/bbmap/Makefile | 5 | ||||
| -rw-r--r-- | biology/bbmap/distinfo | 6 | ||||
| -rw-r--r-- | biology/bbmap/pkg-plist | 10 |
3 files changed, 16 insertions, 5 deletions
diff --git a/biology/bbmap/Makefile b/biology/bbmap/Makefile index 7eb55b35a9e3..f9adfeb4db4f 100644 --- a/biology/bbmap/Makefile +++ b/biology/bbmap/Makefile @@ -1,5 +1,5 @@ PORTNAME= bbmap -DISTVERSION= 39.14 +DISTVERSION= 39.15 CATEGORIES= biology java MASTER_SITES= SF/bbmap/ DISTNAME= BBMap_${PORTVERSION} @@ -7,7 +7,8 @@ DISTNAME= BBMap_${PORTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= BBMap short read aligner, and other bioinformatic tools WWW= https://jgi.doe.gov/data-and-tools/bbtools/ \ - https://sourceforge.net/projects/bbmap/ + https://sourceforge.net/projects/bbmap/ \ + https://bitbucket.org/berkeleylab/jgi-bbtools/src/master/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt diff --git a/biology/bbmap/distinfo b/biology/bbmap/distinfo index c2f5a721063f..1bec09ddc1f9 100644 --- a/biology/bbmap/distinfo +++ b/biology/bbmap/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1736804942 -SHA256 (BBMap_39.14.tar.gz) = 87f7746dee28629afb368530457e7d2dfaabb4f8c5967dba4269d9a724f78e30 -SIZE (BBMap_39.14.tar.gz) = 12469315 +TIMESTAMP = 1737030117 +SHA256 (BBMap_39.15.tar.gz) = b6698469a2a90f4930537c575ff1f70332f88a933dd5e286c83ea0ff30802344 +SIZE (BBMap_39.15.tar.gz) = 12498916 diff --git a/biology/bbmap/pkg-plist b/biology/bbmap/pkg-plist index d67fce64164a..1515769118ae 100644 --- a/biology/bbmap/pkg-plist +++ b/biology/bbmap/pkg-plist @@ -533,11 +533,21 @@ libexec/bbmap/webcheck.sh %%JAVAJARDIR%%/bbmap/bin/Cluster.java %%JAVAJARDIR%%/bbmap/bin/Contig.class %%JAVAJARDIR%%/bbmap/bin/Contig.java +%%JAVAJARDIR%%/bbmap/bin/ContigRenamer$ProcessThread.class +%%JAVAJARDIR%%/bbmap/bin/ContigRenamer$Scaf.class +%%JAVAJARDIR%%/bbmap/bin/ContigRenamer.class +%%JAVAJARDIR%%/bbmap/bin/ContigRenamer.java %%JAVAJARDIR%%/bbmap/bin/DataLoader.class %%JAVAJARDIR%%/bbmap/bin/DataLoader.java +%%JAVAJARDIR%%/bbmap/bin/FileRenamer.class +%%JAVAJARDIR%%/bbmap/bin/FileRenamer.java %%JAVAJARDIR%%/bbmap/bin/QuickBin$ProcessThread.class %%JAVAJARDIR%%/bbmap/bin/QuickBin.class %%JAVAJARDIR%%/bbmap/bin/QuickBin.java +%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG$Genome.class +%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG$ProcessThread.class +%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG.class +%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG.java %%JAVAJARDIR%%/bbmap/bin/SimilarityMeasures.class %%JAVAJARDIR%%/bbmap/bin/SimilarityMeasures.java %%JAVAJARDIR%%/bbmap/bin/SketchRecord.class |