diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2024-12-03 08:52:16 -0600 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2024-12-03 08:55:06 -0600 |
| commit | 12b5c3c8f16f39c561373f70a554b98ae9f0dec7 (patch) | |
| tree | 5c06461db0a2d592f52d8b33861363592733dc13 | |
| parent | x11/xterm: Update to 396 (diff) | |
biology/fasttree: Update to 2.1.11
Add -trans option for amino acid alignments
Changes: https://microbesonline.org/fasttree/ChangeLog
PR: 283035
Reported by: alster@vinterdalen.se
| -rw-r--r-- | biology/fasttree/Makefile | 14 | ||||
| -rw-r--r-- | biology/fasttree/distinfo | 6 | ||||
| -rw-r--r-- | biology/fasttree/files/patch-FastTree-2.1.10.c | 4 |
3 files changed, 12 insertions, 12 deletions
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile index 560274658cd1..47ede864ea6f 100644 --- a/biology/fasttree/Makefile +++ b/biology/fasttree/Makefile @@ -1,23 +1,23 @@ PORTNAME= FastTree -DISTVERSION= 2.1.10 -PORTREVISION= 5 +DISTVERSION= 2.1.11 CATEGORIES= biology -MASTER_SITES= http://www.microbesonline.org/fasttree/ +MASTER_SITES= https://www.microbesonline.org/fasttree/ EXTRACT_SUFX= .c MAINTAINER= jwb@FreeBSD.org COMMENT= Approximately-maximum-likelihood phylogenetic trees from alignments -WWW= http://www.microbesonline.org/fasttree/ +WWW= https://www.microbesonline.org/fasttree/ LICENSE= GPLv2+ -NO_WRKSUBDIR= yes -PLIST_FILES= bin/FastTree - .if !exists(/usr/include/omp.h) USES= compiler:gcc-c++11-lib .endif +NO_WRKSUBDIR= yes + +PLIST_FILES= bin/FastTree + do-extract: @${CP} ${DISTDIR}/${DISTFILES} ${WRKSRC} @${CP} ${FILESDIR}/Makefile ${WRKSRC} diff --git a/biology/fasttree/distinfo b/biology/fasttree/distinfo index 2777da148528..2b1eecd7ac7f 100644 --- a/biology/fasttree/distinfo +++ b/biology/fasttree/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1512317739 -SHA256 (FastTree-2.1.10.c) = 54cb89fc1728a974a59eae7a7ee6309cdd3cddda9a4c55b700a71219fc6e926d -SIZE (FastTree-2.1.10.c) = 390916 +TIMESTAMP = 1732861256 +SHA256 (FastTree-2.1.11.c) = 9026ae550307374be92913d3098f8d44187d30bea07902b9dcbfb123eaa2050f +SIZE (FastTree-2.1.11.c) = 395543 diff --git a/biology/fasttree/files/patch-FastTree-2.1.10.c b/biology/fasttree/files/patch-FastTree-2.1.10.c index 36dd31ceb877..274e2d7719af 100644 --- a/biology/fasttree/files/patch-FastTree-2.1.10.c +++ b/biology/fasttree/files/patch-FastTree-2.1.10.c @@ -1,5 +1,5 @@ ---- FastTree-2.1.10.c.orig 2017-12-04 15:09:11 UTC -+++ FastTree-2.1.10.c +--- FastTree-2.1.11.c.orig 2017-12-04 15:09:11 UTC ++++ FastTree-2.1.11.c @@ -8759,7 +8759,7 @@ double pnorm(double x) void *mymalloc(size_t sz) { |