summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorThierry Thomas <thierry@FreeBSD.org>2020-12-12 17:04:37 +0000
committerThierry Thomas <thierry@FreeBSD.org>2020-12-12 17:04:37 +0000
commit0b5864f66c9ebdb1fe499427d12253b51ae298d1 (patch)
tree81ef83b36dbb3d2668a1fa9f050eeb07db79e821
parentdns/nsd: Security update to 4.3.4 (diff)
- Upgrade math/eigen3 to 3.3.8;
- Add some dependencies which might be detected by Find_Package but not registered; - Bump PORTREVISION of consumers. PR: 250833 Submitted by: /me Approved by: tcberner@ (KDE / maintainer) + exp-run
Notes
Notes: svn path=/head/; revision=557839
-rw-r--r--astro/kstars/Makefile1
-rw-r--r--audio/csound/Makefile2
-rw-r--r--audio/guitarix-lv2/Makefile2
-rw-r--r--biology/cufflinks/Makefile2
-rw-r--r--biology/gcta/Makefile2
-rw-r--r--biology/gemma/Makefile2
-rw-r--r--biology/iqtree/Makefile1
-rw-r--r--cad/PrusaSlicer/Makefile2
-rw-r--r--cad/freecad/Makefile1
-rw-r--r--cad/ifcopenshell/Makefile2
-rw-r--r--cad/openroad/Makefile1
-rw-r--r--cad/openscad-devel/Makefile2
-rw-r--r--cad/openscad/Makefile2
-rw-r--r--devel/nextpnr/Makefile1
-rw-r--r--editors/calligra/Makefile2
-rw-r--r--games/leela-zero/Makefile2
-rw-r--r--graphics/colmap/Makefile2
-rw-r--r--graphics/digikam/Makefile2
-rw-r--r--graphics/instant-meshes/Makefile2
-rw-r--r--graphics/krita/Makefile2
-rw-r--r--graphics/mirtk/Makefile1
-rw-r--r--graphics/movit/Makefile2
-rw-r--r--graphics/open3d/Makefile2
-rw-r--r--graphics/opencv-core/Makefile2
-rw-r--r--graphics/opencv-java/Makefile2
-rw-r--r--graphics/opencv/Makefile2
-rw-r--r--graphics/opengv/Makefile2
-rw-r--r--graphics/pcl-pointclouds/Makefile2
-rw-r--r--graphics/py-open3d-python/Makefile2
-rw-r--r--graphics/py-opencv/Makefile2
-rw-r--r--graphics/vpaint/Makefile1
-rw-r--r--graphics/vv/Makefile2
-rw-r--r--math/analitza/Makefile1
-rw-r--r--math/ceres-solver/Makefile1
-rw-r--r--math/cgal/Makefile1
-rw-r--r--math/eigen3/Makefile23
-rw-r--r--math/eigen3/distinfo6
-rw-r--r--math/eigen3/files/patch-Eigen_src_Core_products_Parallelizer.h31
-rw-r--r--math/eigen3/files/patch-test_CMakeLists.txt11
-rw-r--r--math/fcl/Makefile1
-rw-r--r--math/fcl05/Makefile1
-rw-r--r--math/g2o/Makefile2
-rw-r--r--math/ignition-math/Makefile2
-rw-r--r--math/libmesh/Makefile2
-rw-r--r--math/libsemigroups/Makefile1
-rw-r--r--math/moab/Makefile1
-rw-r--r--math/openturns/Makefile1
-rw-r--r--math/py-python-fcl/Makefile1
-rw-r--r--math/scilab/Makefile2
-rw-r--r--math/xlife++/Makefile2
-rw-r--r--misc/dartsim/Makefile1
-rw-r--r--misc/ngraph/Makefile2
-rw-r--r--misc/ompl/Makefile1
-rw-r--r--misc/openmvg/Makefile1
-rw-r--r--misc/visp/Makefile2
-rw-r--r--multimedia/mlt-qt5/Makefile2
-rw-r--r--multimedia/mlt/Makefile2
-rw-r--r--multimedia/py-mlt/Makefile2
-rw-r--r--net-mgmt/metronome/Makefile2
-rw-r--r--science/ALPSCore/Makefile2
-rw-r--r--science/InsightToolkit/Makefile2
-rw-r--r--science/antioch/Makefile2
-rw-r--r--science/avogadrolibs/Makefile1
-rw-r--r--science/chrono/Makefile2
-rw-r--r--science/gnudatalanguage/Makefile42
-rw-r--r--science/gnudatalanguage/distinfo6
-rw-r--r--science/gnudatalanguage/files/patch-CMakeLists.txt4
-rw-r--r--science/gnudatalanguage/files/patch-src__gshhs.cpp11
-rw-r--r--science/gnudatalanguage/files/patch-src_ssrfpack.c4
-rw-r--r--science/gnudatalanguage/pkg-plist125
-rw-r--r--science/lammps/Makefile1
-rw-r--r--science/openbabel/Makefile2
-rw-r--r--science/opensph/Makefile2
-rw-r--r--science/pagmo2/Makefile1
-rw-r--r--science/py-avogadrolibs/Makefile1
-rw-r--r--science/rdkit/Makefile2
-rw-r--r--science/step/Makefile1
-rw-r--r--science/votca/Makefile1
-rw-r--r--x11-toolkits/nanogui/Makefile1
79 files changed, 265 insertions, 110 deletions
diff --git a/astro/kstars/Makefile b/astro/kstars/Makefile
index 24a26c7149b2..0ca0568ef8e3 100644
--- a/astro/kstars/Makefile
+++ b/astro/kstars/Makefile
@@ -2,6 +2,7 @@
PORTNAME= kstars
DISTVERSION= 3.5.0
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= astro kde
MASTER_SITES= KDE/stable/${PORTNAME}
diff --git a/audio/csound/Makefile b/audio/csound/Makefile
index 46479b018157..ef1244d64c85 100644
--- a/audio/csound/Makefile
+++ b/audio/csound/Makefile
@@ -3,7 +3,7 @@
PORTNAME= csound
DISTVERSION= 6.14.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= audio lang
PATCH_SITES= https://github.com/csound/csound/commit/
diff --git a/audio/guitarix-lv2/Makefile b/audio/guitarix-lv2/Makefile
index 650642cae151..bd379725fc88 100644
--- a/audio/guitarix-lv2/Makefile
+++ b/audio/guitarix-lv2/Makefile
@@ -2,7 +2,7 @@
PORTNAME= guitarix
DISTVERSION= 0.40.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= audio
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/
PKGNAMESUFFIX= -lv2
diff --git a/biology/cufflinks/Makefile b/biology/cufflinks/Makefile
index c3232d9a414a..a413916455c7 100644
--- a/biology/cufflinks/Makefile
+++ b/biology/cufflinks/Makefile
@@ -3,7 +3,7 @@
PORTNAME= cufflinks
DISTVERSIONPREFIX= v
DISTVERSION= 2.2.1-89
-PORTREVISION= 1
+PORTREVISION= 2
DISTVERSIONSUFFIX= -gdc3b0cb
CATEGORIES= biology
diff --git a/biology/gcta/Makefile b/biology/gcta/Makefile
index e5fb5cca3177..bc2f3c21c5f2 100644
--- a/biology/gcta/Makefile
+++ b/biology/gcta/Makefile
@@ -2,7 +2,7 @@
PORTNAME= gcta
DISTVERSION= 1.26.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= https://cnsgenomics.com/software/gcta/pre_gcta/
DISTNAME= ${PORTNAME}_${PORTVERSION}_src
diff --git a/biology/gemma/Makefile b/biology/gemma/Makefile
index f190dc5a1aa6..716406573c16 100644
--- a/biology/gemma/Makefile
+++ b/biology/gemma/Makefile
@@ -2,7 +2,7 @@
PORTNAME= gemma
DISTVERSION= 0.98.1
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile
index 8ac48748111c..61ca6c0d2719 100644
--- a/biology/iqtree/Makefile
+++ b/biology/iqtree/Makefile
@@ -3,6 +3,7 @@
PORTNAME= iqtree
DISTVERSIONPREFIX= v
DISTVERSION= 2.0.6
+PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
diff --git a/cad/PrusaSlicer/Makefile b/cad/PrusaSlicer/Makefile
index 2bc755bb5294..79a5cf04c18f 100644
--- a/cad/PrusaSlicer/Makefile
+++ b/cad/PrusaSlicer/Makefile
@@ -3,7 +3,7 @@
PORTNAME= PrusaSlicer
DISTVERSIONPREFIX= version_
DISTVERSION= 2.2.0
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= cad
MAINTAINER= teodorsigaev@gmail.com
diff --git a/cad/freecad/Makefile b/cad/freecad/Makefile
index aaa341f5e2b2..5e9f2b229231 100644
--- a/cad/freecad/Makefile
+++ b/cad/freecad/Makefile
@@ -2,6 +2,7 @@
PORTNAME= FreeCAD
DISTVERSION= 0.18.5
+PORTREVISION= 1
# use these for bugfixes/snapshots
# DISTVERSION= 0.18-16093 # git rev-list --count
# DISTVERSIONSUFFIX= -g690774c0e
diff --git a/cad/ifcopenshell/Makefile b/cad/ifcopenshell/Makefile
index 03c22cf25061..53a5b79a25e9 100644
--- a/cad/ifcopenshell/Makefile
+++ b/cad/ifcopenshell/Makefile
@@ -4,7 +4,7 @@ PORTNAME= ifcopenshell
DISTVERSIONPREFIX= v
DISTVERSION= 0.6.0
DISTVERSIONSUFFIX= b0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= cad
DISTNAME= ${PORTNAME}-${DISTVERSION}
diff --git a/cad/openroad/Makefile b/cad/openroad/Makefile
index 60920d198cf1..b592a90e2ea7 100644
--- a/cad/openroad/Makefile
+++ b/cad/openroad/Makefile
@@ -3,6 +3,7 @@
PORTNAME= openroad
DISTVERSIONPREFIX= v
DISTVERSION= 0.9.0-beta-637
+PORTREVISION= 1
DISTVERSIONSUFFIX= -gc3706485
CATEGORIES= cad
diff --git a/cad/openscad-devel/Makefile b/cad/openscad-devel/Makefile
index 0a4f194df343..d73ad078e190 100644
--- a/cad/openscad-devel/Makefile
+++ b/cad/openscad-devel/Makefile
@@ -3,7 +3,7 @@
PORTNAME= openscad
PORTVERSION= 2020.01.04
-PORTREVISION= 3
+PORTREVISION= 4
#PORTREVISION= 1
CATEGORIES= cad
PKGNAMESUFFIX= -devel
diff --git a/cad/openscad/Makefile b/cad/openscad/Makefile
index 113db03a7b28..a6d64d452aca 100644
--- a/cad/openscad/Makefile
+++ b/cad/openscad/Makefile
@@ -3,7 +3,7 @@
PORTNAME= openscad
PORTVERSION= 2019.05.10
-PORTREVISION= 7
+PORTREVISION= 8
#PORTREVISION= 1
CATEGORIES= cad
diff --git a/devel/nextpnr/Makefile b/devel/nextpnr/Makefile
index 4e564814c782..107ebc34716c 100644
--- a/devel/nextpnr/Makefile
+++ b/devel/nextpnr/Makefile
@@ -2,6 +2,7 @@
PORTNAME= nextpnr
DISTVERSION= g20200804
+PORTREVISION= 1
CATEGORIES= devel
MAINTAINER= manu@FreeBSD.org
diff --git a/editors/calligra/Makefile b/editors/calligra/Makefile
index a7a2b833bd8b..fdeae461cade 100644
--- a/editors/calligra/Makefile
+++ b/editors/calligra/Makefile
@@ -2,7 +2,7 @@
PORTNAME= calligra
DISTVERSION= 3.2.1
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= editors kde
MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}
DIST_SUBDIR= KDE/${PORTNAME}
diff --git a/games/leela-zero/Makefile b/games/leela-zero/Makefile
index 319f26f76e32..e4e3494e34ab 100644
--- a/games/leela-zero/Makefile
+++ b/games/leela-zero/Makefile
@@ -3,7 +3,7 @@
PORTNAME= leela-zero
DISTVERSIONPREFIX= v
DISTVERSION= 0.17
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= games
MAINTAINER= yuri@FreeBSD.org
diff --git a/graphics/colmap/Makefile b/graphics/colmap/Makefile
index 675ca7928a1b..a6c438139eb2 100644
--- a/graphics/colmap/Makefile
+++ b/graphics/colmap/Makefile
@@ -2,7 +2,7 @@
PORTNAME= colmap
DISTVERSION= 3.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
MAINTAINER= jbeich@FreeBSD.org
diff --git a/graphics/digikam/Makefile b/graphics/digikam/Makefile
index 9b76b40deb9d..e5cb334cbd5d 100644
--- a/graphics/digikam/Makefile
+++ b/graphics/digikam/Makefile
@@ -2,7 +2,7 @@
PORTNAME= digikam
DISTVERSION= 7.1.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics kde
MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}
DIST_SUBDIR= KDE/digikam/${PORTVERSION}
diff --git a/graphics/instant-meshes/Makefile b/graphics/instant-meshes/Makefile
index 8b90b2022d66..b44cc99a9d8e 100644
--- a/graphics/instant-meshes/Makefile
+++ b/graphics/instant-meshes/Makefile
@@ -3,7 +3,7 @@
PORTNAME= instant-meshes
DISTVERSION= 0.0-42
DISTVERSIONSUFFIX= -g4a083f4
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= graphics
MAINTAINER= greg@unrelenting.technology
diff --git a/graphics/krita/Makefile b/graphics/krita/Makefile
index 28066c0b0940..cc6f26166ca8 100644
--- a/graphics/krita/Makefile
+++ b/graphics/krita/Makefile
@@ -2,7 +2,7 @@
PORTNAME= krita
DISTVERSION= 4.4.1
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= graphics kde
MASTER_SITES= KDE/stable/${PORTNAME}/${DISTVERSION}
DIST_SUBDIR= KDE/${PORTNAME}
diff --git a/graphics/mirtk/Makefile b/graphics/mirtk/Makefile
index 87f0b3508aae..4b6f6c699701 100644
--- a/graphics/mirtk/Makefile
+++ b/graphics/mirtk/Makefile
@@ -3,6 +3,7 @@
PORTNAME= mirtk
DISTVERSIONPREFIX= v
DISTVERSION= 2.0.0-122
+PORTREVISION= 1
DISTVERSIONSUFFIX= -g38210fa
CATEGORIES= graphics
diff --git a/graphics/movit/Makefile b/graphics/movit/Makefile
index 9f4b9c1efefa..8e1e4aca9081 100644
--- a/graphics/movit/Makefile
+++ b/graphics/movit/Makefile
@@ -2,7 +2,7 @@
PORTNAME= movit
PORTVERSION= 1.6.2
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= graphics
MASTER_SITES= http://${PORTNAME}.sesse.net/
diff --git a/graphics/open3d/Makefile b/graphics/open3d/Makefile
index d0b8d44fa370..7686c3b5dc68 100644
--- a/graphics/open3d/Makefile
+++ b/graphics/open3d/Makefile
@@ -3,7 +3,7 @@
PORTNAME= Open3D
DISTVERSIONPREFIX= v
DISTVERSION= 0.2
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= graphics
MAINTAINER= yuri@FreeBSD.org
diff --git a/graphics/opencv-core/Makefile b/graphics/opencv-core/Makefile
index 409189475995..fa0de009e639 100644
--- a/graphics/opencv-core/Makefile
+++ b/graphics/opencv-core/Makefile
@@ -1,7 +1,7 @@
# Created by: Martin Matuska <mm@FreeBSD.org>
# $FreeBSD$
-PORTREVISION= 2
+PORTREVISION= 3
PKGNAMESUFFIX= -${OCV_SLAVE}
COMMENT= OpenCV core libraries
diff --git a/graphics/opencv-java/Makefile b/graphics/opencv-java/Makefile
index 69e4dc9ad8c9..37818c96021b 100644
--- a/graphics/opencv-java/Makefile
+++ b/graphics/opencv-java/Makefile
@@ -1,6 +1,6 @@
# $FreeBSD$
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= graphics java
PKGNAMESUFFIX= -${OCV_SLAVE}
diff --git a/graphics/opencv/Makefile b/graphics/opencv/Makefile
index 1163f5da2a2d..1cc021d34868 100644
--- a/graphics/opencv/Makefile
+++ b/graphics/opencv/Makefile
@@ -3,7 +3,7 @@
PORTNAME= opencv
PORTVERSION= 3.4.1
-PORTREVISION= 36
+PORTREVISION= 37
CATEGORIES= graphics
MAINTAINER= tcberner@FreeBSD.org
diff --git a/graphics/opengv/Makefile b/graphics/opengv/Makefile
index 21042235065b..c57eae3d67e4 100644
--- a/graphics/opengv/Makefile
+++ b/graphics/opengv/Makefile
@@ -2,7 +2,7 @@
PORTNAME= opengv
DISTVERSION= g20181024
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= graphics
MAINTAINER= yuri@FreeBSD.org
diff --git a/graphics/pcl-pointclouds/Makefile b/graphics/pcl-pointclouds/Makefile
index 95e8c2d77b1a..0f3145c24b8e 100644
--- a/graphics/pcl-pointclouds/Makefile
+++ b/graphics/pcl-pointclouds/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pcl
DISTVERSIONPREFIX= ${PORTNAME}-
DISTVERSION= 1.11.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics math
PKGNAMESUFFIX= -pointclouds
diff --git a/graphics/py-open3d-python/Makefile b/graphics/py-open3d-python/Makefile
index 6a1c9c8526be..2cfb7b720280 100644
--- a/graphics/py-open3d-python/Makefile
+++ b/graphics/py-open3d-python/Makefile
@@ -3,7 +3,7 @@
PORTNAME= open3d-python
DISTVERSIONPREFIX= v
DISTVERSION= 0.2
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= graphics
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/graphics/py-opencv/Makefile b/graphics/py-opencv/Makefile
index c3806724719d..216eefd2a1cb 100644
--- a/graphics/py-opencv/Makefile
+++ b/graphics/py-opencv/Makefile
@@ -1,7 +1,7 @@
# Created by: Martin Matuska <mm@FreeBSD.org>
# $FreeBSD$
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= graphics python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/graphics/vpaint/Makefile b/graphics/vpaint/Makefile
index bed7d22783d2..e6c1eefce962 100644
--- a/graphics/vpaint/Makefile
+++ b/graphics/vpaint/Makefile
@@ -3,6 +3,7 @@
PORTNAME= vpaint
PORTVERSION= 1.7
+PORTREVISION= 1
DISTVERSIONPREFIX= v
CATEGORIES= graphics
diff --git a/graphics/vv/Makefile b/graphics/vv/Makefile
index 8bc7c9bc19ca..c3fb67761bb7 100644
--- a/graphics/vv/Makefile
+++ b/graphics/vv/Makefile
@@ -4,7 +4,7 @@ PORTNAME= vv
DISTVERSIONPREFIX= v
DISTVERSION= 1.4.0-383
DISTVERSIONSUFFIX= -g7a783a8b
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
MAINTAINER= yuri@FreeBSD.org
diff --git a/math/analitza/Makefile b/math/analitza/Makefile
index 339a981a8b92..e830c587c2b2 100644
--- a/math/analitza/Makefile
+++ b/math/analitza/Makefile
@@ -2,6 +2,7 @@
PORTNAME= analitza
DISTVERSION= ${KDE_APPLICATIONS_VERSION}
+PORTREVISION= 1
CATEGORIES= math education kde kde-applications
MAINTAINER= kde@FreeBSD.org
diff --git a/math/ceres-solver/Makefile b/math/ceres-solver/Makefile
index 224a3c7d4145..3472cd9297ce 100644
--- a/math/ceres-solver/Makefile
+++ b/math/ceres-solver/Makefile
@@ -2,6 +2,7 @@
PORTNAME= ceres-solver
DISTVERSION= 2.0.0
+PORTREVISION= 1
CATEGORIES= math
MAINTAINER= jbeich@FreeBSD.org
diff --git a/math/cgal/Makefile b/math/cgal/Makefile
index d1480f134088..4ef167d75efc 100644
--- a/math/cgal/Makefile
+++ b/math/cgal/Makefile
@@ -3,6 +3,7 @@
PORTNAME= cgal
PORTVERSION= 5.0.2
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= https://github.com/${PORTNAME:tu}/${PORTNAME}/releases/download/releases/${DISTNAME}/
DISTNAME= ${PORTNAME:tu}-${PORTVERSION}
diff --git a/math/eigen3/Makefile b/math/eigen3/Makefile
index 1d42bb236f32..59c5eda36a3d 100644
--- a/math/eigen3/Makefile
+++ b/math/eigen3/Makefile
@@ -1,11 +1,9 @@
# $FreeBSD$
PORTNAME= eigen
-DISTVERSION= 3.3.7
+PORTVERSION= 3.3.8
CATEGORIES= math
-MASTER_SITES= https://bitbucket.org/${PORTNAME}/${PORTNAME}/get/
-DISTNAME= ${PORTVERSION}
-DIST_SUBDIR= ${PORTNAME}
+MASTER_SITES= https://gitlab.com/libeigen/eigen/-/archive/${PORTVERSION}/
MAINTAINER= kde@FreeBSD.org
COMMENT= Lightweight library for vector and matrix math
@@ -15,11 +13,24 @@ LICENSE_COMB= multi
LICENSE_FILE_LGPL21= ${WRKSRC}/COPYING.LGPL
LICENSE_FILE_MPL20= ${WRKSRC}/COPYING.MPL2
-CMAKE_ARGS= -DPKGCONFIG_INSTALL_DIR:PATH="${PREFIX}/libdata/pkgconfig"
+CMAKE_ARGS= -DPKGCONFIG_INSTALL_DIR:PATH="libdata/pkgconfig"
USES= cmake tar:bzip2
NO_BUILD= yes
NO_ARCH= yes
-WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTNAME}-323c052e1731
+OPTIONS_DEFINE= FULL
+OPTIONS_DEFAULT=FULL
+
+FULL_DESC= Add the support for math dependencies
+FULL_CMAKE_ON= -DBLAS_DIR:PATH="${LOCALBASE}"
+FULL_USES= blaslapack:openblas gl pkgconfig
+FULL_USE= GL=gl glew glut
+FULL_LIB_DEPENDS= libcholmod.so:math/suitesparse \
+ libsuperlu.so:math/superlu \
+ libadolc.so:math/adol-c \
+ libfftw3.so:math/fftw3 \
+ libmpfr.so:math/mpfr \
+ libgmp.so:math/gmp \
+ libboost_thread.so:devel/boost-libs
.include <bsd.port.mk>
diff --git a/math/eigen3/distinfo b/math/eigen3/distinfo
index f4f4fb2ffbfc..d318df032633 100644
--- a/math/eigen3/distinfo
+++ b/math/eigen3/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1544905503
-SHA256 (eigen/3.3.7.tar.bz2) = 9f13cf90dedbe3e52a19f43000d71fdf72e986beb9a5436dddcd61ff9d77a3ce
-SIZE (eigen/3.3.7.tar.bz2) = 1665168
+TIMESTAMP = 1604406672
+SHA256 (eigen-3.3.8.tar.bz2) = 0215c6593c4ee9f1f7f28238c4e8995584ebf3b556e9dbf933d84feb98d5b9ef
+SIZE (eigen-3.3.8.tar.bz2) = 1667794
diff --git a/math/eigen3/files/patch-Eigen_src_Core_products_Parallelizer.h b/math/eigen3/files/patch-Eigen_src_Core_products_Parallelizer.h
new file mode 100644
index 000000000000..660759aff0a9
--- /dev/null
+++ b/math/eigen3/files/patch-Eigen_src_Core_products_Parallelizer.h
@@ -0,0 +1,31 @@
+--- Eigen/src/Core/products/Parallelizer.h.orig 2020-10-05 11:24:15 UTC
++++ Eigen/src/Core/products/Parallelizer.h
+@@ -132,8 +132,7 @@ void parallelize_gemm(const Functor& func, Index rows,
+
+ ei_declare_aligned_stack_constructed_variable(GemmParallelInfo<Index>,info,threads,0);
+
+- int errorCount = 0;
+- #pragma omp parallel num_threads(threads) reduction(+: errorCount)
++ #pragma omp parallel num_threads(threads)
+ {
+ Index i = omp_get_thread_num();
+ // Note that the actual number of threads might be lower than the number of request ones.
+@@ -152,14 +151,11 @@ void parallelize_gemm(const Functor& func, Index rows,
+ info[i].lhs_start = r0;
+ info[i].lhs_length = actualBlockRows;
+
+- EIGEN_TRY {
+- if(transpose) func(c0, actualBlockCols, 0, rows, info);
+- else func(0, rows, c0, actualBlockCols, info);
+- } EIGEN_CATCH(...) {
+- ++errorCount;
+- }
++ if(transpose)
++ func(c0, actualBlockCols, 0, rows, info);
++ else
++ func(0, rows, c0, actualBlockCols, info);
+ }
+- if (errorCount) EIGEN_THROW_X(Eigen::eigen_assert_exception());
+ #endif
+ }
+
diff --git a/math/eigen3/files/patch-test_CMakeLists.txt b/math/eigen3/files/patch-test_CMakeLists.txt
new file mode 100644
index 000000000000..826374bc38f5
--- /dev/null
+++ b/math/eigen3/files/patch-test_CMakeLists.txt
@@ -0,0 +1,11 @@
+--- test/CMakeLists.txt.orig 2020-10-05 11:24:15 UTC
++++ test/CMakeLists.txt
+@@ -163,7 +163,7 @@ ei_add_test(constructor)
+ ei_add_test(linearstructure)
+ ei_add_test(integer_types)
+ ei_add_test(unalignedcount)
+-if(NOT EIGEN_TEST_NO_EXCEPTIONS)
++if(NOT EIGEN_TEST_NO_EXCEPTIONS AND NOT EIGEN_TEST_OPENMP)
+ ei_add_test(exceptions)
+ endif()
+ ei_add_test(redux)
diff --git a/math/fcl/Makefile b/math/fcl/Makefile
index 0d5e2217d2be..c5d9621fe5a2 100644
--- a/math/fcl/Makefile
+++ b/math/fcl/Makefile
@@ -3,6 +3,7 @@
PORTNAME= fcl
DISTVERSIONPREFIX= v
DISTVERSION= 0.6.1
+PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org
diff --git a/math/fcl05/Makefile b/math/fcl05/Makefile
index e771739d0e31..7c836b49d5a7 100644
--- a/math/fcl05/Makefile
+++ b/math/fcl05/Makefile
@@ -2,6 +2,7 @@
PORTNAME= fcl
DISTVERSION= 0.5.0
+PORTREVISION= 1
CATEGORIES= math
PKGNAMESUFFIX= 05
diff --git a/math/g2o/Makefile b/math/g2o/Makefile
index 840728676bf0..a766a74dd8ae 100644
--- a/math/g2o/Makefile
+++ b/math/g2o/Makefile
@@ -3,7 +3,7 @@
PORTNAME= g2o
DISTVERSION= 20200410
DISTVERSIONSUFFIX= _git
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org
diff --git a/math/ignition-math/Makefile b/math/ignition-math/Makefile
index bda319fcaa88..59a0676530c1 100644
--- a/math/ignition-math/Makefile
+++ b/math/ignition-math/Makefile
@@ -2,7 +2,7 @@
PORTNAME= ignition-math
DISTVERSION= 6.0.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= math
MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/
diff --git a/math/libmesh/Makefile b/math/libmesh/Makefile
index 9c71feb731a4..2e9bd4186b32 100644
--- a/math/libmesh/Makefile
+++ b/math/libmesh/Makefile
@@ -4,7 +4,7 @@
PORTNAME= libmesh
DISTVERSIONPREFIX= v
DISTVERSION= 1.6.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org
diff --git a/math/libsemigroups/Makefile b/math/libsemigroups/Makefile
index e27a3addfd0a..e45c809403ba 100644
--- a/math/libsemigroups/Makefile
+++ b/math/libsemigroups/Makefile
@@ -3,6 +3,7 @@
PORTNAME= libsemigroups
PORTVERSION= 1.3.4
+PORTREVISION= 1
DISTVERSIONPREFIX= v
CATEGORIES= math
diff --git a/math/moab/Makefile b/math/moab/Makefile
index 39205fa53755..2da2e3dc98ae 100644
--- a/math/moab/Makefile
+++ b/math/moab/Makefile
@@ -2,6 +2,7 @@
PORTNAME= moab
DISTVERSION= 5.2.1
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/
diff --git a/math/openturns/Makefile b/math/openturns/Makefile
index b3f155b0c989..ac2dd983de87 100644
--- a/math/openturns/Makefile
+++ b/math/openturns/Makefile
@@ -3,6 +3,7 @@
PORTNAME= openturns
DISTVERSIONPREFIX= v
DISTVERSION= 1.16
+PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org
diff --git a/math/py-python-fcl/Makefile b/math/py-python-fcl/Makefile
index c4e0f60320de..010c4bf37f0e 100644
--- a/math/py-python-fcl/Makefile
+++ b/math/py-python-fcl/Makefile
@@ -2,6 +2,7 @@
PORTNAME= python-fcl
PORTVERSION= 0.0.12
+PORTREVISION= 1
CATEGORIES= math python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/math/scilab/Makefile b/math/scilab/Makefile
index 1039afea5356..74bcac97861c 100644
--- a/math/scilab/Makefile
+++ b/math/scilab/Makefile
@@ -3,7 +3,7 @@
PORTNAME= scilab
PORTVERSION= 6.1.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= math cad java
MASTER_SITES= https://www.scilab.org/download/${PORTVERSION}/
DISTFILES= ${DISTNAME}-src${EXTRACT_SUFX}
diff --git a/math/xlife++/Makefile b/math/xlife++/Makefile
index ca640f597957..24e1f42b6a18 100644
--- a/math/xlife++/Makefile
+++ b/math/xlife++/Makefile
@@ -2,7 +2,7 @@
PORTNAME= xlife++
DISTVERSION= 2.0.1
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= math
MASTER_SITES= https://uma.ensta-paristech.fr/soft/XLiFE++/var/files/src/
DISTNAME= xlifepp-sources-v${DISTVERSION}-2018-05-09
diff --git a/misc/dartsim/Makefile b/misc/dartsim/Makefile
index 2f5645c8850c..bcada8f8b026 100644
--- a/misc/dartsim/Makefile
+++ b/misc/dartsim/Makefile
@@ -3,6 +3,7 @@
PORTNAME= dartsim
DISTVERSIONPREFIX= v
DISTVERSION= 6.9.4
+PORTREVISION= 1
CATEGORIES= misc
MAINTAINER= yuri@FreeBSD.org
diff --git a/misc/ngraph/Makefile b/misc/ngraph/Makefile
index 3d97304c1062..838166645b17 100644
--- a/misc/ngraph/Makefile
+++ b/misc/ngraph/Makefile
@@ -4,7 +4,7 @@ PORTNAME= ngraph
DISTVERSIONPREFIX= v
DISTVERSION= 0.29.0-rc.0-345
DISTVERSIONSUFFIX= -g58b649aa6
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= misc # machine-learning
PKGNAMESUFFIX= -machine-learning-library
diff --git a/misc/ompl/Makefile b/misc/ompl/Makefile
index 9f49cdd0392f..576d53ad344f 100644
--- a/misc/ompl/Makefile
+++ b/misc/ompl/Makefile
@@ -2,6 +2,7 @@
PORTNAME= ompl
DISTVERSION= 1.5.0
+PORTREVISION= 1
CATEGORIES= misc comms
MAINTAINER= yuri@FreeBSD.org
diff --git a/misc/openmvg/Makefile b/misc/openmvg/Makefile
index eaf6ee8a36b5..256848826608 100644
--- a/misc/openmvg/Makefile
+++ b/misc/openmvg/Makefile
@@ -3,6 +3,7 @@
PORTNAME= openmvg
DISTVERSIONPREFIX= v
DISTVERSION= 1.6
+PORTREVISION= 1
CATEGORIES= misc science
MAINTAINER= yuri@FreeBSD.org
diff --git a/misc/visp/Makefile b/misc/visp/Makefile
index 9a7071f77140..42306533d1a3 100644
--- a/misc/visp/Makefile
+++ b/misc/visp/Makefile
@@ -2,7 +2,7 @@
PORTNAME= visp
DISTVERSION= 3.3.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= misc
MASTER_SITES= http://gforge.inria.fr/frs/download.php/latestfile/475/
diff --git a/multimedia/mlt-qt5/Makefile b/multimedia/mlt-qt5/Makefile
index 6f66a7014fe0..3cb2833532c0 100644
--- a/multimedia/mlt-qt5/Makefile
+++ b/multimedia/mlt-qt5/Makefile
@@ -1,6 +1,6 @@
# $FreeBSD$
-PORTREVISION= 0
+PORTREVISION= 1
USES= qt:5 xorg
USE_CXXSTD= c++11
diff --git a/multimedia/mlt/Makefile b/multimedia/mlt/Makefile
index eaef6764c4eb..ca9909aaad69 100644
--- a/multimedia/mlt/Makefile
+++ b/multimedia/mlt/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mlt
DISTVERSIONPREFIX= v
DISTVERSION= 6.22.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES?= multimedia
MAINTAINER= kde@FreeBSD.org
diff --git a/multimedia/py-mlt/Makefile b/multimedia/py-mlt/Makefile
index 1becdb0c1f19..5d3f6dbce742 100644
--- a/multimedia/py-mlt/Makefile
+++ b/multimedia/py-mlt/Makefile
@@ -1,7 +1,7 @@
# Created by: Charlie Kester <corky1951@comcast.net>
# $FreeBSD$
-PORTREVISION= 0
+PORTREVISION= 1
CATEGORIES= multimedia python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/net-mgmt/metronome/Makefile b/net-mgmt/metronome/Makefile
index 3897a8498415..700114bda9c1 100644
--- a/net-mgmt/metronome/Makefile
+++ b/net-mgmt/metronome/Makefile
@@ -2,7 +2,7 @@
PORTNAME= metronome
DISTVERSION= 0.9.0
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= net-mgmt dns
MAINTAINER= krion@FreeBSD.org
diff --git a/science/ALPSCore/Makefile b/science/ALPSCore/Makefile
index dacb540a44e0..8bcf00dd7d33 100644
--- a/science/ALPSCore/Makefile
+++ b/science/ALPSCore/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ALPSCore
DISTVERSIONPREFIX= v
DISTVERSION= 2.2.0
-PORTREVISION= 12
+PORTREVISION= 13
CATEGORIES= science
MAINTAINER= ports@FreeBSD.org
diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile
index 421ff8db58a3..f3fb0a3dd2a4 100644
--- a/science/InsightToolkit/Makefile
+++ b/science/InsightToolkit/Makefile
@@ -4,7 +4,7 @@
PORTNAME= InsightToolkit
PORTVERSION= 5.0.1
DISTVERSIONPREFIX=v
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science biology
MASTER_SITES= https://github.com/InsightSoftwareConsortium/ITK/releases/download/v5.0.1/:data
DISTFILES= InsightData-5.0.1.tar.gz:data
diff --git a/science/antioch/Makefile b/science/antioch/Makefile
index 4c5617318d85..779158079538 100644
--- a/science/antioch/Makefile
+++ b/science/antioch/Makefile
@@ -4,7 +4,7 @@ PORTNAME= antioch
DISTVERSIONPREFIX= v
DISTVERSION= 0.4.0-156
DISTVERSIONSUFFIX= -g90ffa43
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/avogadrolibs/Makefile b/science/avogadrolibs/Makefile
index 5db0faf040cb..c40c9c0e8ef3 100644
--- a/science/avogadrolibs/Makefile
+++ b/science/avogadrolibs/Makefile
@@ -2,6 +2,7 @@
PORTNAME= avogadrolibs
DISTVERSION= 1.93.0
+PORTREVISION= 1
CATEGORIES= science
PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/
diff --git a/science/chrono/Makefile b/science/chrono/Makefile
index 9e905f134ebe..e62cbc08b39f 100644
--- a/science/chrono/Makefile
+++ b/science/chrono/Makefile
@@ -2,7 +2,7 @@
PORTNAME= chrono
DISTVERSION= 5.0.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science devel
PKGNAMESUFFIX= -physics-simulation-engine
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index c4298a419545..9368c4435940 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -2,9 +2,10 @@
# $FreeBSD$
PORTNAME= gnudatalanguage
-PORTVERSION= 0.9.9
+PORTVERSION= 1.0.0
+PORTREVISION= 1
DISTVERSIONPREFIX= v
-PORTREVISION= 16
+DISTVERSIONSUFFIX= -rc.3
CATEGORIES= science lang
.if defined(BUILD_PYTHON_MODULE)
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -16,8 +17,10 @@ COMMENT?= GDL, a free IDL compatible incremental compiler
LICENSE= GPLv2
LIB_DEPENDS+= libgeotiff.so:graphics/libgeotiff\
+ libexpat.so:textproc/expat2 \
libplplot.so:math/plplot \
libtiff.so:graphics/tiff \
+ libshp.so:devel/shapelib \
libpng.so:graphics/png \
libsz.so:science/szip \
libps.so:print/pslib \
@@ -31,36 +34,29 @@ USES= cmake compiler:c++11-lang fortran ncurses pkgconfig readline \
USE_WX= 3.0+
USE_XORG= x11 sm ice xext
-# On FreeBSD < 11 libc++ lacks support for sized delete operators.
-# GCC dropped the builtin version of these operators in 6+ by
-# defaulting to gnu++14. Force c++11 instead.
-# For a more detailed discussion see:
-# https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=219484
-USE_CXXSTD= gnu++11
-
# Disable ncurses and readline from ports
-# Disable ImageMagick (does'nt work with plplot because dynamic drivers
-# are enabled by default)
-# TODO: add a slave port for mpich
# TODO: create a port for Cmsvlib http://cow.physics.wisc.edu/~craigm/idl/down/cmsvlib.tar.gz
# TODO: create a port for Astron http://idlastro.gsfc.nasa.gov/ftp/astron.tar.gz
# TODO: create a port for TexToIdl http://physics.mnstate.edu/mcraig/textoidl/textoidl-2-1-2.tar
CMAKE_ARGS= -DREADLINEDIR:STRING="/usr" \
-DOPENMP:BOOL=NO \
- -DNCURSESDIR:STRING="/usr"
+ -DNCURSESDIR:STRING="/usr" \
+ -DPYTHON:BOOL=NO
CPPFLAGS+= ${CFLAGS} -fno-inline -DNPY_NO_DEPRECATED_API -DNPY_1_7_API_VERSION
CXXFLAGS+= -std=gnu++11 -DACCEPT_USE_OF_DEPRECATED_PROJ_API_H=1
LDFLAGS+= -lpthread -L${LOCALBASE}/lib
+TEST_TARGET= check
SLAVEDIRS= science/py-gnudatalanguage
# Upstream prefer GraphicsMagick over ImageMackick but ATM it fails
# see https://github.com/gnudatalanguage/gdl/issues/611
+# + Python is broken on 1.0.0-rc2 See issue #757
#OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GLPK GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 MPI NETCDF PYTHON UDUNITS
#OPTIONS_DEFAULT=EIGEN FFTW GLPK GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 NETCDF PYTHON UDUNITS
-OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GLPK IMAGEMAGICK GRIB HDF5 LIBPROJ4 MPI NETCDF PYTHON UDUNITS
-OPTIONS_DEFAULT=EIGEN FFTW GLPK IMAGEMAGICK GRIB HDF5 LIBPROJ4 NETCDF PYTHON UDUNITS
+OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GLPK IMAGEMAGICK GRIB HDF5 LIBPROJ4 MPI NETCDF UDUNITS
+OPTIONS_DEFAULT=EIGEN FFTW GLPK IMAGEMAGICK GRIB HDF5 LIBPROJ4 NETCDF UDUNITS
EIGEN_DESC= Eigen3 support (boost performance)
EIGEN_USES= eigen:3
@@ -102,19 +98,19 @@ LIBPROJ4_CMAKE_ON= -DLIBPROJ4:BOOL=YES
LIBPROJ4_CMAKE_OFF= -DLIBPROJ4:BOOL=NO
MPI_LIB_DEPENDS= libmpich.so:net/mpich
-MPI_CMAKE_ON= -DMPICH:BOOL=ON
-MPI_CMAKE_OFF= -DMPICH:BOOL=OFF
+MPI_CMAKE_ON= -DMPI:BOOL=ON
+MPI_CMAKE_OFF= -DMPI:BOOL=OFF -DMPIDIR=/none
NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf
NETCDF_CMAKE_ON= -DNETCDF:BOOL=YES -DHDF:BOOL=NO
NETCDF_CMAKE_OFF= -DNETCDF:BOOL=NO
-PYTHON_USES= python:2.7
-PYTHON_BUILD_DEPENDS= ${PYNUMPY}
-PYTHON_RUN_DEPENDS= ${PYNUMPY} \
- ${PYTHON_PKGNAMEPREFIX}matplotlib2>0:math/py-matplotlib2@${PY_FLAVOR}
-PYTHON_CMAKE_ON= -DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}"
-PYTHON_CMAKE_OFF= -DPYTHON:BOOL=NO
+#PYTHON_USES= python:3.6+
+#PYTHON_BUILD_DEPENDS= ${PYNUMPY}
+#PYTHON_RUN_DEPENDS= ${PYNUMPY} \
+# ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR}
+#PYTHON_CMAKE_ON= -DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}"
+#PYTHON_CMAKE_OFF= -DPYTHON:BOOL=NO
# QHULL IS NOT NEEDED YET!
#QHULL_DESC= Enable Triangulate and Qhull support
diff --git a/science/gnudatalanguage/distinfo b/science/gnudatalanguage/distinfo
index 1a3007029e4f..b2055eb99dcf 100644
--- a/science/gnudatalanguage/distinfo
+++ b/science/gnudatalanguage/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1543867255
-SHA256 (gnudatalanguage-gdl-v0.9.9_GH0.tar.gz) = ad5de3fec095a5c58b46338dcc7367d2565c093794ab1bbcf180bba1a712cf14
-SIZE (gnudatalanguage-gdl-v0.9.9_GH0.tar.gz) = 4478934
+TIMESTAMP = 1592584083
+SHA256 (gnudatalanguage-gdl-v1.0.0-rc.3_GH0.tar.gz) = 0dc5c5a397d46002e763d24dba707f0aa55ba404062b4ba5d4c217af8a7da024
+SIZE (gnudatalanguage-gdl-v1.0.0-rc.3_GH0.tar.gz) = 32650313
diff --git a/science/gnudatalanguage/files/patch-CMakeLists.txt b/science/gnudatalanguage/files/patch-CMakeLists.txt
index 6986bde4a20e..68ddcea3c779 100644
--- a/science/gnudatalanguage/files/patch-CMakeLists.txt
+++ b/science/gnudatalanguage/files/patch-CMakeLists.txt
@@ -1,6 +1,6 @@
---- CMakeLists.txt.orig 2018-12-01 14:19:52 UTC
+--- CMakeLists.txt.orig 2020-03-05 09:15:01 UTC
+++ CMakeLists.txt
-@@ -1077,7 +1077,7 @@ if(NOT PYTHON_MODULE)
+@@ -1104,7 +1104,7 @@ if(NOT PYTHON_MODULE)
endif(NOT PYTHON_MODULE)
install(FILES ${CMAKE_SOURCE_DIR}/AUTHORS ${CMAKE_SOURCE_DIR}/README DESTINATION ${CMAKE_INSTALL_PREFIX}/${GDL_DATA_DIR})
diff --git a/science/gnudatalanguage/files/patch-src__gshhs.cpp b/science/gnudatalanguage/files/patch-src__gshhs.cpp
deleted file mode 100644
index 7fc66c7558a7..000000000000
--- a/science/gnudatalanguage/files/patch-src__gshhs.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/gshhs.cpp.orig 2018-03-28 19:12:21 UTC
-+++ src/gshhs.cpp
-@@ -235,7 +235,7 @@ else
- double ss = h.south * GSHHS_SCL;
- double nn = h.north * GSHHS_SCL;
- char source = (src == 1) ? 'W' : 'C'; // Either WVS or CIA (WDBII) pedigree
-- if ( river ) source = tolower( (int) source ); // Lower case c means river-lake
-+ if ( river ) source = std::tolower( (int) source ); // Lower case c means river-lake
- int line = (h.area) ? 0 : 1; // Either Polygon (0) or Line (1) (if no area)
-
-
diff --git a/science/gnudatalanguage/files/patch-src_ssrfpack.c b/science/gnudatalanguage/files/patch-src_ssrfpack.c
index 9faf106aec8b..e4afbc24ddc1 100644
--- a/science/gnudatalanguage/files/patch-src_ssrfpack.c
+++ b/science/gnudatalanguage/files/patch-src_ssrfpack.c
@@ -1,6 +1,6 @@
---- src/ssrfpack.c.orig 2018-12-01 14:19:52 UTC
+--- src/ssrfpack.c.orig 2020-03-05 09:15:01 UTC
+++ src/ssrfpack.c
-@@ -11,6 +11,10 @@
+@@ -15,6 +15,10 @@
# define sincos(x,s,c) (*s = sin(x), *c = cos(x))
#endif
diff --git a/science/gnudatalanguage/pkg-plist b/science/gnudatalanguage/pkg-plist
index c72160894575..7bbb215cc460 100644
--- a/science/gnudatalanguage/pkg-plist
+++ b/science/gnudatalanguage/pkg-plist
@@ -1,7 +1,7 @@
bin/gdl
man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/CMakeLists.txt
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/Makefile.am
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/LIST
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/README
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/Saturn.jpg
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/banner_for_testsuite.pro
@@ -22,6 +22,7 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/benchmark/benchmark_info_soft.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/benchmark/benchmark_plot_cartouche.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/benchmark/benchmark_svg.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/benchmark/compare_sort_algos.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/benchmark/plot_all_benchmark.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/benchmark/plot_basic_benchmarks.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/benchmark/print_basic_benchmarks.pro
@@ -29,7 +30,7 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/byte_array.h5
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/check_if_device_is_ok.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/check_save_restore.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/checks
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/cmake_install.cmake
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/cw_bgroup_broken.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/decomposed_return_values.sav
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/delvarrnew.pp.pro
@@ -58,10 +59,26 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/idl.xdr
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/image_test.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/indgen_sample.sav
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_all_projs.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_axis.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_colors.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_contour.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_cursor.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_deriv.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_dialog_message.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_get_kbrd.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_map.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_plotting_misc.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_rk4.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_surface_basic.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_titles.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_widgets.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/launchtest.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/libtest_ce.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/make_test_delvarrnew.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/nc_test.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/ob_xml_to_struct__define.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/obxml.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/python/test-GDL.py
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/rnewtest.pp.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/rnewtest.pro
@@ -73,7 +90,6 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_arg_present.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_array_equal.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_array_indices.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_axis.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_base64.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_besel.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_binfmt.pro
@@ -155,23 +171,18 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_check_math.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_chisqr_cvf.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_clip.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_colors.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_colorsetup.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_common.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_congrid.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_constants.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_container.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_contour.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_convert_coord.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_convol.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_correlate.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_cursor.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_delvarrnew.pp.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_delvarrnew.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_deriv.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_device.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_diag_matrix.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_dialog_message.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_dicom.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_dilate.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_dims_of_arrays.pro
@@ -192,6 +203,7 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_file_info.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_file_lines.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_file_link.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_file_mkdir.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_file_move.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_file_search.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_file_test.pro
@@ -205,11 +217,12 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_fx_root.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_fz_roots.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_gammas.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_gaussian_function.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_gc.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_get_kbrd.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_get_lun.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_get_screen_size.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_gh00178.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_gh00716.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_greek_letters.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_grib.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_hash.pro
@@ -242,7 +255,6 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_make_array.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_make_dll.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_make_dll.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_map.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_map2.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_math_function_dim.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_matrix_multiply.pro
@@ -252,6 +264,7 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_modulo.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_moment.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_mpfit.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_mpi.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_multiroots.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_n_tags.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_nans_in_sort_and_median.pro
@@ -276,12 +289,13 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_plot_oo.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_plot_ranges.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_plot_usersym.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_plotting_misc.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_plotting_ranges.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_pmulti.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_pmulti_basic.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_point_lun.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_poly2d.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_poly_fit.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_polywarp.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_postscript.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_powell.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_product.pro
@@ -292,29 +306,33 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_python_module_0.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_python_module_1.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_python_module_2.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_qhull.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_qromb.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_qromo.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_random.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_read_jpeg.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_read_standard_images.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_readf.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_readf_with_crlf.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_reads.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_rebin.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_resolve_routine.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_restore.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_rk4.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_rounding.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_routine_dir.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_routine_filepath.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_routine_name.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_routine_names.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_same_name.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_save.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_save_restore.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_scope_varfetch.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_scope_varname.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_sem.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_simplex.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_size.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_skip_lun.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_smooth.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_sort.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_spawn_unit.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_spher_harm.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_spl_init.pro
@@ -325,13 +343,13 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_stregex.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_strmatch.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_strsplit.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_struct_assign.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_structures.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_suite.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_surface_basic.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_systime.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_tag_names.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_tic_toc.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_tiff.pro
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_titles.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_total.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_triangulate.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_trisol.pro
@@ -349,6 +367,7 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_wordexp.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_wordexp_null_string.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_xdr.pro
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_xmlsax.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_zeropoly.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_zip.pro
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/tiff/24bit_color.tif
@@ -360,6 +379,11 @@ man/man1/gdl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/try
%%DATADIR%%/AUTHORS
%%DATADIR%%/README
+%%DATADIR%%/lib/CMprocedures/mpcurvefit.pro
+%%DATADIR%%/lib/CMprocedures/mpfit.pro
+%%DATADIR%%/lib/CMprocedures/mpfit2dpeak.pro
+%%DATADIR%%/lib/CMprocedures/mpfitfun.pro
+%%DATADIR%%/lib/CMprocedures/mpfitpeak.pro
%%DATADIR%%/lib/appleman.pro
%%DATADIR%%/lib/array_indices.pro
%%DATADIR%%/lib/bilinear.pro
@@ -367,6 +391,7 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/chisqr_cvf.pro
%%DATADIR%%/lib/congrid.pro
%%DATADIR%%/lib/correlate.pro
+%%DATADIR%%/lib/curvefit.pro
%%DATADIR%%/lib/cw_bgroup_donotuseyet.pro
%%DATADIR%%/lib/define_msgblk.pro
%%DATADIR%%/lib/define_msgblk_from_file.pro
@@ -395,6 +420,7 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/errplot.pro
%%DATADIR%%/lib/escape_special_char.pro
%%DATADIR%%/lib/factorial.pro
+%%DATADIR%%/lib/file_chmod.pro
%%DATADIR%%/lib/file_copy.pro
%%DATADIR%%/lib/file_expand_path.pro
%%DATADIR%%/lib/file_lines.pro
@@ -404,12 +430,16 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/filepath.pro
%%DATADIR%%/lib/findex.pro
%%DATADIR%%/lib/findfile.pro
+%%DATADIR%%/lib/gauss2dfit.pro
+%%DATADIR%%/lib/gaussfit.pro
+%%DATADIR%%/lib/gaussian_function.pro
%%DATADIR%%/lib/gdl_multimin_fdf.pro
%%DATADIR%%/lib/get_login_info.pro
%%DATADIR%%/lib/handle_create.pro
%%DATADIR%%/lib/handle_free.pro
%%DATADIR%%/lib/handle_info.pro
%%DATADIR%%/lib/handle_value.pro
+%%DATADIR%%/lib/hanning.pro
%%DATADIR%%/lib/helpform.pro
%%DATADIR%%/lib/hist_2d.pro
%%DATADIR%%/lib/hist_equal.pro
@@ -431,7 +461,22 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/lmgr.pro
%%DATADIR%%/lib/loadct.pro
%%DATADIR%%/lib/make_dll.pro
-%%DATADIR%%/lib/map_clip_set.pro
+%%DATADIR%%/lib/map/gdl_map_proj_init_common.pro
+%%DATADIR%%/lib/map/gdl_set_map_limits.pro
+%%DATADIR%%/lib/map/gdlcommon_mapprojections_common.pro
+%%DATADIR%%/lib/map/gdldrawshapecompound.pro
+%%DATADIR%%/lib/map/gdldrawshapefile.pro
+%%DATADIR%%/lib/map/map_adjlon.pro
+%%DATADIR%%/lib/map/map_clip_set.pro
+%%DATADIR%%/lib/map/map_continents.pro
+%%DATADIR%%/lib/map/map_grid.pro
+%%DATADIR%%/lib/map/map_horizon.pro
+%%DATADIR%%/lib/map/map_image.pro
+%%DATADIR%%/lib/map/map_proj_info.pro
+%%DATADIR%%/lib/map/map_proj_init.pro
+%%DATADIR%%/lib/map/map_set.pro
+%%DATADIR%%/lib/map/map_struct_append.pro
+%%DATADIR%%/lib/map/merge_structs_mapset.pro
%%DATADIR%%/lib/matrix_multiply.pro
%%DATADIR%%/lib/meanabsdev.pro
%%DATADIR%%/lib/norm.pro
@@ -448,6 +493,7 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/ploterr.pro
%%DATADIR%%/lib/poly.pro
%%DATADIR%%/lib/poly_area.pro
+%%DATADIR%%/lib/poly_fit.pro
%%DATADIR%%/lib/polyfillv.pro
%%DATADIR%%/lib/polywarp.pro
%%DATADIR%%/lib/popd.pro
@@ -468,6 +514,7 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/read_ascii.pro
%%DATADIR%%/lib/read_binary.pro
%%DATADIR%%/lib/read_bmp.pro
+%%DATADIR%%/lib/read_csv.pro
%%DATADIR%%/lib/read_dicom.pro
%%DATADIR%%/lib/read_gif.pro
%%DATADIR%%/lib/read_image.pro
@@ -478,11 +525,11 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/read_tiff.pro
%%DATADIR%%/lib/read_x11_bitmap.pro
%%DATADIR%%/lib/read_xwd.pro
-%%DATADIR%%/lib/real_part.pro
%%DATADIR%%/lib/resolve_all.pro
%%DATADIR%%/lib/rot.pro
%%DATADIR%%/lib/rstrpos.pro
%%DATADIR%%/lib/showfont.pro
+%%DATADIR%%/lib/sigma.pro
%%DATADIR%%/lib/skewness.pro
%%DATADIR%%/lib/skip_lun.pro
%%DATADIR%%/lib/standardize.pro
@@ -503,14 +550,17 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/uniq.pro
%%DATADIR%%/lib/utilities/color2color.pro
%%DATADIR%%/lib/utilities/gdl_status.pro
+%%DATADIR%%/lib/utilities/grab_on_internet.pro
%%DATADIR%%/lib/utilities/idlneturl__define.pro
%%DATADIR%%/lib/utilities/idlsysmonitorinfo__define.pro
+%%DATADIR%%/lib/utilities/md5sum_check.pro
%%DATADIR%%/lib/utilities/path_add.pro
%%DATADIR%%/lib/utilities/path_remove.pro
%%DATADIR%%/lib/utilities/path_sep_add.pro
%%DATADIR%%/lib/utilities/path_show.pro
%%DATADIR%%/lib/utilities/read_ascii_basic.pro
%%DATADIR%%/lib/utilities/routine_name.pro
+%%DATADIR%%/lib/utilities/wget_or_curl.pro
%%DATADIR%%/lib/value_locate.pro
%%DATADIR%%/lib/variance.pro
%%DATADIR%%/lib/widget_message.pro
@@ -527,3 +577,44 @@ man/man1/gdl.1.gz
%%DATADIR%%/lib/xmanager.pro
%%DATADIR%%/lib/xregistered.pro
%%DATADIR%%/lib/zenity_check.pro
+%%DATADIR%%/resource/maps/COPYRIGHTS
+%%DATADIR%%/resource/maps/README
+%%DATADIR%%/resource/maps/earth.jpg
+%%DATADIR%%/resource/maps/high/continents_med.dbf
+%%DATADIR%%/resource/maps/high/continents_med.shp
+%%DATADIR%%/resource/maps/high/continents_med.shx
+%%DATADIR%%/resource/maps/high/ne_10m_admin_0_boundary_lines_land.dbf
+%%DATADIR%%/resource/maps/high/ne_10m_admin_0_boundary_lines_land.shp
+%%DATADIR%%/resource/maps/high/ne_10m_admin_0_boundary_lines_land.shx
+%%DATADIR%%/resource/maps/high/ne_10m_admin_1_states_provinces.dbf
+%%DATADIR%%/resource/maps/high/ne_10m_admin_1_states_provinces.shp
+%%DATADIR%%/resource/maps/high/ne_10m_admin_1_states_provinces.shx
+%%DATADIR%%/resource/maps/high/ne_10m_admin_1_states_provinces_lines.dbf
+%%DATADIR%%/resource/maps/high/ne_10m_admin_1_states_provinces_lines.shp
+%%DATADIR%%/resource/maps/high/ne_10m_admin_1_states_provinces_lines.shx
+%%DATADIR%%/resource/maps/high/ne_10m_lakes.dbf
+%%DATADIR%%/resource/maps/high/ne_10m_lakes.shp
+%%DATADIR%%/resource/maps/high/ne_10m_lakes.shx
+%%DATADIR%%/resource/maps/high/ne_10m_rivers_lake_centerlines.dbf
+%%DATADIR%%/resource/maps/high/ne_10m_rivers_lake_centerlines.shp
+%%DATADIR%%/resource/maps/high/ne_10m_rivers_lake_centerlines.shx
+%%DATADIR%%/resource/maps/low/continents.dbf
+%%DATADIR%%/resource/maps/low/continents.shp
+%%DATADIR%%/resource/maps/low/continents.shx
+%%DATADIR%%/resource/maps/low/ne_110m_admin_0_boundary_lines_land.dbf
+%%DATADIR%%/resource/maps/low/ne_110m_admin_0_boundary_lines_land.shp
+%%DATADIR%%/resource/maps/low/ne_110m_admin_0_boundary_lines_land.shx
+%%DATADIR%%/resource/maps/low/ne_110m_admin_1_states_provinces.dbf
+%%DATADIR%%/resource/maps/low/ne_110m_admin_1_states_provinces.shp
+%%DATADIR%%/resource/maps/low/ne_110m_admin_1_states_provinces.shx
+%%DATADIR%%/resource/maps/low/ne_110m_admin_1_states_provinces_lines.dbf
+%%DATADIR%%/resource/maps/low/ne_110m_admin_1_states_provinces_lines.shp
+%%DATADIR%%/resource/maps/low/ne_110m_admin_1_states_provinces_lines.shx
+%%DATADIR%%/resource/maps/low/ne_110m_lakes.dbf
+%%DATADIR%%/resource/maps/low/ne_110m_lakes.shp
+%%DATADIR%%/resource/maps/low/ne_110m_lakes.shx
+%%DATADIR%%/resource/maps/low/ne_50m_rivers_lake_centerlines.dbf
+%%DATADIR%%/resource/maps/low/ne_50m_rivers_lake_centerlines.shp
+%%DATADIR%%/resource/maps/low/ne_50m_rivers_lake_centerlines.shx
+%%DATADIR%%/resource/maps/projDefinitions.sav
+%%DATADIR%%/resource/maps/projections.ods
diff --git a/science/lammps/Makefile b/science/lammps/Makefile
index 69103fef9301..09325b7532d2 100644
--- a/science/lammps/Makefile
+++ b/science/lammps/Makefile
@@ -2,6 +2,7 @@
PORTNAME= lammps
PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/}
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/openbabel/Makefile b/science/openbabel/Makefile
index 32f8fb0c1a7f..77dac24ea5e2 100644
--- a/science/openbabel/Makefile
+++ b/science/openbabel/Makefile
@@ -3,7 +3,7 @@
PORTNAME= openbabel
PORTVERSION= 2.4.1
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
MASTER_SITES= SF
diff --git a/science/opensph/Makefile b/science/opensph/Makefile
index 56ec3e43bcb7..c6c14ca76120 100644
--- a/science/opensph/Makefile
+++ b/science/opensph/Makefile
@@ -3,7 +3,7 @@
PORTNAME= OpenSPH
DISTVERSIONPREFIX= v
DISTVERSION= g20190519
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/pagmo2/Makefile b/science/pagmo2/Makefile
index 28a9c137a223..8839bfedfa43 100644
--- a/science/pagmo2/Makefile
+++ b/science/pagmo2/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pagmo2
DISTVERSIONPREFIX= v
DISTVERSION= 2.15.0-102
+PORTREVISION= 1
DISTVERSIONSUFFIX= -gdecda188
CATEGORIES= science
diff --git a/science/py-avogadrolibs/Makefile b/science/py-avogadrolibs/Makefile
index c3ec6b62f346..f39b0863c762 100644
--- a/science/py-avogadrolibs/Makefile
+++ b/science/py-avogadrolibs/Makefile
@@ -2,6 +2,7 @@
PORTNAME= avogadrolibs
DISTVERSION= 1.93.0
+PORTREVISION= 1
CATEGORIES= science
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/rdkit/Makefile b/science/rdkit/Makefile
index 6fd5f931c763..877b7b22f5c2 100644
--- a/science/rdkit/Makefile
+++ b/science/rdkit/Makefile
@@ -3,7 +3,7 @@
PORTNAME= rdkit
DISTVERSIONPREFIX= Release_
DISTVERSION= 2018_09_3
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/step/Makefile b/science/step/Makefile
index c17cf7e47e54..c14c468ac762 100644
--- a/science/step/Makefile
+++ b/science/step/Makefile
@@ -2,6 +2,7 @@
PORTNAME= step
DISTVERSION= ${KDE_APPLICATIONS_VERSION}
+PORTREVISION= 1
CATEGORIES= science education kde kde-applications
MAINTAINER= kde@FreeBSD.org
diff --git a/science/votca/Makefile b/science/votca/Makefile
index 5d4bf6f9a2e4..af4accedcbd8 100644
--- a/science/votca/Makefile
+++ b/science/votca/Makefile
@@ -3,6 +3,7 @@
PORTNAME= votca
DISTVERSIONPREFIX= v
DISTVERSION= 1.6.2
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/x11-toolkits/nanogui/Makefile b/x11-toolkits/nanogui/Makefile
index b36308d0d0ff..75d16eee9d6b 100644
--- a/x11-toolkits/nanogui/Makefile
+++ b/x11-toolkits/nanogui/Makefile
@@ -2,6 +2,7 @@
PORTNAME= nanogui
DISTVERSION= g20190922
+PORTREVISION= 1
CATEGORIES= x11-toolkits
MAINTAINER= yuri@FreeBSD.org