--- interface.c.orig Wed Jun 7 16:50:07 2000
+++ interface.c Tue Aug 8 03:11:33 2000
@@ -1078,7 +1078,7 @@
/* added for File System Standards - Francois */
path1=(char *)ckalloc((strlen(path)+64)*sizeof(char));
strcpy(path1,path);
- strcat(path1,"/usr/share/clustalx:/usr/local/share/clustalx");
+ strcat(path1,DATADIR);
lf=(sint)strlen(fname);
deb=path1;
@@ -2121,7 +2121,7 @@
strcpy(local_prompt,"\n\nEnter new name to avoid overwriting ");
strcat(local_prompt," [%s]: ");
fprintf(stdout,local_prompt,file_name);
- gets(temp);
+ fgets(temp,sizeof(temp),stdin);
if(*temp != EOS) strcpy(file_name,temp);
}
}
@@ -2129,7 +2129,7 @@
strcpy(local_prompt,prompt);
strcat(local_prompt," [%s]: ");
fprintf(stdout,local_prompt,file_name);
- gets(temp);
+ fgets(temp,sizeof(temp),stdin);
if(*temp != EOS) strcpy(file_name,temp);
}
@@ -2335,7 +2335,7 @@
if (usemenu)
fprintf(stdout,"\nUse the existing GUIDE TREE file, %s (y/n) ? [y]: ",
tree_name);
- gets(temp);
+ fgets(temp,sizeof(temp),stdin);
if(*temp != 'n' && *temp != 'N') {
strcpy(phylip_name,tree_name);
use_tree = TRUE;
@@ -2567,7 +2567,7 @@
fprintf(stdout,"\nEnter a name for the guide tree file [%s]: ",
phylip_name);
- gets(temp);
+ fgets(temp,sizeof(temp),stdin);
if(*temp != EOS)
strcpy(phylip_name,temp);
}
@@ -2676,7 +2676,7 @@
#endif
fprintf(stdout,"\nUse the existing GUIDE TREE file for Profile 1, %s (y/n) ? [y]: ",
tree_name);
- gets(temp);
+ fgets(temp,sizeof(temp),stdin);
if(*temp != 'n' && *temp != 'N') {
strcpy(p1_tree_name,tree_name);
use_tree1 = TRUE;
@@ -2702,7 +2702,7 @@
#endif
fprintf(stdout,"\nUse the existing GUIDE TREE file for Profile 2, %s (y/n) ? [y]: ",
tree_name);
- gets(temp);
+ fgets(temp,sizeof(temp),stdin);
if(*temp != 'n' && *temp != 'N') {
strcpy(p2_tree_name,tree_name);
use_tree2 = TRUE;
@@ -3730,7 +3730,7 @@
if(usemenu) {
fprintf(stdout,"\nEnter a name for the parameter output file [%s]: ",
parname);
- gets(temp);
+ fgets(temp,sizeof(temp),stdin);
if(*temp != EOS)
strcpy(parname,temp);
}
