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* science/R-cran-udunits2: Update to 0.13.2.1TAKATSU Tomonari2022-03-152-4/+4
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* science/zotero: Add i386 checksumMikael Urankar2022-03-151-0/+2
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* science/zotero: Add new portMikael Urankar2022-03-155-0/+371
| | | | | | | Zotero is a reference management software to manage bibliographic data and related research materials. WWW: https://www.zotero.org/
* cleanup: remove wrong usage of INSTALLS_OMFBaptiste Daroussin2022-03-152-3/+2
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* science/afni: update to 22.0.19Fernando Apesteguía2022-03-152-4/+4
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* science/py-obspy: Update to 1.3.0Wen Heping2022-03-142-7/+7
| | | | Update DEPENDS
* science/afni: update to 22.0.18Fernando Apesteguía2022-03-122-4/+4
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* science/{,py-}rmf: Update 1.3.1 -> 1.4Yuri Victorovich2022-03-115-10/+10
| | | | Reported by: portscout
* science/chemps2: Update 1.8.11 -> 1.8.12Yuri Victorovich2022-03-112-5/+6
| | | | Reported by: portscout
* science/kst2: Update to 2022.02.16 snapshotMax Brazhnikov2022-03-115-44/+6
| | | | - Drop upstreamed patches.
* science/afni: update to 22.0.16Fernando Apesteguía2022-03-112-5/+4
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* science/py-scipy: Update to 1.8.0Wen Heping2022-03-103-13/+45
| | | | | | | - Add test target PR: 262307 Reported by: wen@ Exp-run by: antoine@
* science/py-hiphive: Update 0.7.1 -> 1.0Yuri Victorovich2022-03-072-6/+9
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* science/py-trainstation: New port: Convenient training of linear modelsYuri Victorovich2022-03-074-0/+37
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* science/shelxle: Update 1.0.1365 -> 1.0.1368Yuri Victorovich2022-03-072-4/+4
| | | | Reported by: portscout
* science/py-tobler: Update to 0.9.0Po-Chuan Hsieh2022-03-082-4/+4
| | | | | Changes: https://github.com/pysal/tobler/releases https://github.com/pysal/tobler/commits/master
* science/py-pysal: Update to 2.6.0Po-Chuan Hsieh2022-03-084-33/+10
| | | | Changes: https://github.com/pysal/pysal/releases
* science/py-pygeometa: Update to 0.9.0Po-Chuan Hsieh2022-03-082-4/+4
| | | | | Changes: https://github.com/geopython/pygeometa/releases https://github.com/geopython/pygeometa/blob/master/debian/changelog
* science/py-asdf: Update to 2.10.0Po-Chuan Hsieh2022-03-082-8/+9
| | | | Changes: https://github.com/asdf-format/asdf/releases
* science/netcdf-fortran: Update to 4.5.4Po-Chuan Hsieh2022-03-086-8/+9
| | | | | | | - Update MASTER_SITES - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/Unidata/netcdf-fortran/releases
* science/netcdf-cxx: Update MASTER_SITESPo-Chuan Hsieh2022-03-081-2/+1
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* science/netcdf: Update to 4.8.1Po-Chuan Hsieh2022-03-0814-256/+154
| | | | | | | - Update MASTER_SITES - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/Unidata/netcdf-c/releases
* science/cdo: Update to 2.0.4Po-Chuan Hsieh2022-03-085-15/+15
| | | | Changes: https://code.mpimet.mpg.de/projects/cdo/news
* science/py-asdf-transform-schemas: Add py-asdf-transform-schemas 0.2.2Po-Chuan Hsieh2022-03-084-0/+39
| | | | | | | | This package provides ASDF schemas for validating transform tags. Users should not need to install this directly; instead, install an implementation package such as asdf-astropy, which includes asdf-transform-schemas as a dependency. WWW: https://github.com/asdf-format/asdf-transform-schemas
* science/py-asdf-standard: Add py-asdf-standard 1.0.1Po-Chuan Hsieh2022-03-084-0/+39
| | | | | | | | | ASDF standard This document describes the Advanced Scientific Data Format (ASDF), pronounced AZ-diff. WWW: https://github.com/asdf-format/asdf-standard
* devel/py-qt5, devel/py-sip: Update versionsLoïc Bartoletti2022-03-074-2/+4
| | | | | | | | | | | | - Update sip to 6.5.1 - Update PyQt5 to 5.15.6 - Update PyQtChart, PyQtNetworkAuth and PyQtWebengine to 5.15.5 - Update PyQtSip to 12.9.1 - Update PyQtBuilder to 1.12.2 - Add ${_MAKE_JOBS} for pyqt.mk (reported by Tatsuki Makino) PR: 261685 Exp-run by: antoine
* science/R-cran-FAdist: upgrade to 2.4Thierry Thomas2022-03-062-5/+4
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* science/rdkit: Update 2021.09.4 -> 2021.09.5Yuri Victorovich2022-03-052-8/+8
| | | | Reported by: portscout
* science/py-netCDF4: Update version 1.5.7=>1.5.8Muhammad Moinur Rahman2022-03-052-10/+9
| | | | | Relnotes: https://github.com/Unidata/netcdf4-python/releases/tag/v1.5.8rel
* science/afni: update to 22.0.15Fernando Apesteguía2022-03-042-5/+4
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* KDE: Update KDE Gear to 21.12.3Tobias C. Berner2022-03-032-6/+6
| | | | | | | | | | | | | | | | | | | | | Thursday, 3 March 2022 Over 120 individual programs plus dozens of programmer libraries and feature plugins are released simultaneously as part of KDE Gear. Today they all get new bugfix source releases with updated translations, including: * kcron: Improve temporary file handling * kio-extras: SFTP can use random access * kontact: Fix Manager Crash when clicking New Distro and app store packagers should update their application packages. Changelog: https://kde.org/announcements/changelogs/gear/21.12.3/ Release Notes: https://community.kde.org/KDE_Gear/21.12_Release_notes
* science/gramps: Mark DEPRECATEDMuhammad Moinur Rahman2022-02-281-0/+3
| | | | | | | | | | - Requires py-bsddb3 which depends on upstream EOLd db5 which is set to expire on 2022-06-30 in the tree. - If you want this port to stay chase upstream to use py-berkeleydb from https://www.jcea.es/programacion/pybsddb.htm which is already in the tree. PR: 262136
* science/netcdf-fortran: Clean up after 4.5.3 updatePo-Chuan Hsieh2022-03-011-7/+0
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* astro/cfitsio: Update to 4.0.0Po-Chuan Hsieh2022-02-282-2/+2
| | | | | | - Bump PORTREVISION of dependent ports for shlib change Changes: https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/docs/changes.txt
* science/healpix: Fix build with cfitsio 4.0.0+Po-Chuan Hsieh2022-02-281-0/+32
| | | | Obtained from: https://sourceforge.net/p/healpix/code/1189/tree//branches/branch_v380r1183/src/cxx/cxxsupport/fitshandle.cc?diff=50dae5f434309d7d74da16d0:1188
* devel/protobuf: Update to 3.19.4Po-Chuan Hsieh2022-02-281-0/+1
| | | | | | - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/protocolbuffers/protobuf/releases
* science/py-pyteomics: Update to 4.5.2Po-Chuan Hsieh2022-02-282-4/+4
| | | | | Changes: https://github.com/levitsky/pyteomics/releases https://pyteomics.readthedocs.io/en/latest/changelog.html
* science/py-pygeodesy: Update to 22.1.22Po-Chuan Hsieh2022-02-282-5/+5
| | | | Changes: https://github.com/mrJean1/PyGeodesy/commits/master
* science/py-phonopy: Update 2.12.0 -> 2.13.1Yuri Victorovich2022-02-272-4/+4
| | | | Reported by: portscout
* science/py-moltemplate: Update 2.20.2 -> 2.20.3Yuri Victorovich2022-02-272-4/+4
| | | | Reported by: portscout
* science/py-qcengine: Update 0.21.0 -> 0.22.0Yuri Victorovich2022-02-272-5/+5
| | | | Reported by: portscout
* science/qmcpack: Correct python dependency; Fix tests.Yuri Victorovich2022-02-271-4/+6
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* science/qmcpack: Update 3.12.0-244 -> 3.13.0Yuri Victorovich2022-02-272-6/+5
| | | | Reported by: portscout
* science/mctc-lib: Update 0.2.4 -> 0.2.5Yuri Victorovich2022-02-273-6/+9
| | | | Reported by: portscout
* science/py-PyFR: Update 1.12.3 -> 1.13.0Yuri Victorovich2022-02-263-7/+8
| | | | Reported by: portscout
* science/jmol: Update 14.32.24 -> 14.32.25Yuri Victorovich2022-02-252-4/+4
| | | | Reported by: portscout
* science/nwchem: Update 7.0.2.20211110 -> 7.0.2.20220224Yuri Victorovich2022-02-252-10/+10
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* math/libqalculate: Update to 4.0.0Jason E. Hale2022-02-241-0/+1
| | | | | | math/qalculate: Update to 4.0.0 Bump PORTREVISION on math/libqalculate consumers due to shlib bump
* math/ipopt: Update 3.12.13 -> 3.14.4Yuri Victorovich2022-02-241-1/+1
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* science/plumed: Update 2.8b -> 2.8.0Yuri Victorovich2022-02-232-5/+4
| | | | Reported by: portscout
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