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-rw-r--r--science/openstructure/files/patch-cmake__support_CopyDependencies.cmake15
-rw-r--r--science/openstructure/files/patch-cmake__support_FindOPENSTRUCTURE.cmake18
-rw-r--r--science/openstructure/files/patch-cmake__support_FindPython.cmake10
-rw-r--r--science/openstructure/files/patch-cmake__support_OST.cmake20
-rw-r--r--science/openstructure/files/patch-modules_base_src_test__utils_compare__files.cc17
-rw-r--r--science/openstructure/files/patch-modules_config_base.hh29
-rw-r--r--science/openstructure/files/patch-modules_db_src_sqlite3.c11
-rw-r--r--science/openstructure/files/patch-modules_gfx_src_offscreen__buffer.hh11
-rw-r--r--science/openstructure/files/patch-modules_gui_src_CMakeLists.txt13
-rw-r--r--science/openstructure/files/patch-modules_gui_src_gosty.cc11
-rw-r--r--science/openstructure/files/patch-modules_img_base_src_raster__image_raster__image.cc11
11 files changed, 0 insertions, 166 deletions
diff --git a/science/openstructure/files/patch-cmake__support_CopyDependencies.cmake b/science/openstructure/files/patch-cmake__support_CopyDependencies.cmake
deleted file mode 100644
index fe47164623db..000000000000
--- a/science/openstructure/files/patch-cmake__support_CopyDependencies.cmake
+++ /dev/null
@@ -1,15 +0,0 @@
---- cmake_support/CopyDependencies.cmake.orig 2018-07-09 02:47:08 UTC
-+++ cmake_support/CopyDependencies.cmake
-@@ -996,10 +996,10 @@ function(copy_python include_path versio
- endforeach()
- else()
- file(COPY ${python_root_dir}/${LIB_DIR}/python${version}/ DESTINATION ${CMAKE_INSTALL_PREFIX}/${LIB_DIR}/python${version} PATTERN "*.pyc" EXCLUDE)
-- if("${LIB_DIR}" MATCHES "lib64")
-+ if("${LIB_DIR}" MATCHES "lib")
- # for 64 bit systems we have to copy the python dir within lib in addition as norarch site packages might get installed there
- file(COPY ${python_root_dir}/lib/python${version}/ DESTINATION ${CMAKE_INSTALL_PREFIX}/lib/python${version} PATTERN "*.pyc" EXCLUDE)
-- endif("${LIB_DIR}" MATCHES "lib64")
-+ endif("${LIB_DIR}" MATCHES "lib")
- endif()
- file(GLOB py_config_files "${include_path}/pyconfig*.h")
- file(COPY ${py_config_files} DESTINATION ${CMAKE_INSTALL_PREFIX}/include/python${version})
diff --git a/science/openstructure/files/patch-cmake__support_FindOPENSTRUCTURE.cmake b/science/openstructure/files/patch-cmake__support_FindOPENSTRUCTURE.cmake
deleted file mode 100644
index c18db5597504..000000000000
--- a/science/openstructure/files/patch-cmake__support_FindOPENSTRUCTURE.cmake
+++ /dev/null
@@ -1,18 +0,0 @@
---- cmake_support/FindOPENSTRUCTURE.cmake.orig 2018-07-09 03:09:01 UTC
-+++ cmake_support/FindOPENSTRUCTURE.cmake
-@@ -27,7 +27,7 @@ macro(find_OPENSTRUCTURE OPENSTRUCTURE_R
- NAMES ost_${LIB}
- HINTS "${PYTHON_ROOT}"
- PATH ${OPENSTRUCTURE_ROOT}
-- PATH_SUFFIXES lib lib64
-+ PATH_SUFFIXES lib
- NO_SYSTEM_ENVIRONMENT_PATH NO_DEFAULT_PATH
- )
- if (NOT FOUND_LIB)
-@@ -84,4 +84,4 @@ else (OPENSTRUCTURE_FOUND)
- if (OPENSTRUCTURE_FIND_REQUIRED)
- message(FATAL_ERROR "Could not find OpenStructure")
- endif ()
--endif ()
-\ No newline at end of file
-+endif ()
diff --git a/science/openstructure/files/patch-cmake__support_FindPython.cmake b/science/openstructure/files/patch-cmake__support_FindPython.cmake
deleted file mode 100644
index c9f792a29fa5..000000000000
--- a/science/openstructure/files/patch-cmake__support_FindPython.cmake
+++ /dev/null
@@ -1,10 +0,0 @@
---- cmake_support/FindPython.cmake.orig 2018-07-08 23:04:29 UTC
-+++ cmake_support/FindPython.cmake
-@@ -75,7 +75,6 @@ macro(_find_python_bin PYTHON_ROOT VERSI
- NAMES "python${_VERSION_NO_DOTS}" "python${VERSION}" python.exe
- HINTS "${PYTHON_ROOT}"
- PATH_SUFFIXES bin
-- NO_SYSTEM_ENVIRONMENT_PATH NO_DEFAULT_PATH
- )
- else()
- find_program(PYTHON_BINARY
diff --git a/science/openstructure/files/patch-cmake__support_OST.cmake b/science/openstructure/files/patch-cmake__support_OST.cmake
deleted file mode 100644
index e88bd1c466d6..000000000000
--- a/science/openstructure/files/patch-cmake__support_OST.cmake
+++ /dev/null
@@ -1,20 +0,0 @@
---- cmake_support/OST.cmake.orig 2018-02-27 14:29:54 UTC
-+++ cmake_support/OST.cmake
-@@ -834,7 +834,7 @@ macro(setup_stage)
- check_architecture()
- endif()
- set (ARCH ${CMAKE_NATIVE_ARCH})
-- if ("${ARCH}" MATCHES "64" AND NOT _UBUNTU_LAYOUT)
-+ if ("${ARCH}" MATCHES "64" AND NOT _UBUNTU_LAYOUT AND NOT ${CMAKE_SYSTEM_NAME} MATCHES "FreeBSD")
- set(LIB_DIR lib64 )
- set(LIB_STAGE_PATH "${STAGE_DIR}/lib64" )
- else()
-@@ -902,7 +902,7 @@ set(_BOOST_MIN_VERSION 1.31)
-
- macro(setup_boost)
- set (Boost_NO_BOOST_CMAKE TRUE)
-- find_package(Boost ${_BOOST_MIN_VERSION} COMPONENTS python REQUIRED)
-+ find_package(Boost ${_BOOST_MIN_VERSION} COMPONENTS ${FREEBSD_BOOST_PYTHON_COMPONENT} REQUIRED)
- set(BOOST_PYTHON_LIBRARIES ${Boost_LIBRARIES})
- set(Boost_LIBRARIES)
- find_package(Boost ${_BOOST_MIN_VERSION}
diff --git a/science/openstructure/files/patch-modules_base_src_test__utils_compare__files.cc b/science/openstructure/files/patch-modules_base_src_test__utils_compare__files.cc
deleted file mode 100644
index ac497f782233..000000000000
--- a/science/openstructure/files/patch-modules_base_src_test__utils_compare__files.cc
+++ /dev/null
@@ -1,17 +0,0 @@
-Patch for the obvious bug. Reported to the upstream.
-
---- modules/base/src/test_utils/compare_files.cc.orig 2018-07-10 05:54:54 UTC
-+++ modules/base/src/test_utils/compare_files.cc
-@@ -37,8 +37,10 @@ bool compare_files(const String& test, c
- }
- String test_line, gold_line;
- while (true) {
-- bool test_end=std::getline(test_stream, test_line) != 0;
-- bool gold_end=std::getline(gold_stream, gold_line) != 0;
-+ std::getline(test_stream, test_line);
-+ std::getline(gold_stream, gold_line);
-+ bool test_end=test_stream.eof();
-+ bool gold_end=gold_stream.eof();
- if (!(test_end || gold_end)) {
- return true;
- }
diff --git a/science/openstructure/files/patch-modules_config_base.hh b/science/openstructure/files/patch-modules_config_base.hh
deleted file mode 100644
index 5d29060e4768..000000000000
--- a/science/openstructure/files/patch-modules_config_base.hh
+++ /dev/null
@@ -1,29 +0,0 @@
---- modules/config/base.hh.orig 2018-07-09 01:41:40 UTC
-+++ modules/config/base.hh
-@@ -56,22 +56,26 @@ typedef unsigned short Word;
- #ifndef round_function
- #define round_function
- #ifndef round
-+#if !defined(__FreeBSD__)
- inline Real round( Real d )
- {
- return floor(d+Real(0.5));
- }
- #endif
- #endif
-+#endif
-
- #ifndef rint_function
- #define rint_function
- #ifndef rint
-+#if !defined(__FreeBSD__)
- inline Real rint(Real d)
- {
- return floor(d+Real(0.5));
- }
- #endif
- #endif
-+#endif
-
- #if _MSC_VER
- #pragma warning(disable:4251)
diff --git a/science/openstructure/files/patch-modules_db_src_sqlite3.c b/science/openstructure/files/patch-modules_db_src_sqlite3.c
deleted file mode 100644
index fe5e4584cc47..000000000000
--- a/science/openstructure/files/patch-modules_db_src_sqlite3.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- modules/db/src/sqlite3.c.orig 2018-07-09 00:05:56 UTC
-+++ modules/db/src/sqlite3.c
-@@ -15341,7 +15341,7 @@ SQLITE_PRIVATE void sqlite3MemSetDefault
- ** SQLITE_WITHOUT_ZONEMALLOC symbol is defined.
- */
- #include <sys/sysctl.h>
--#include <malloc/malloc.h>
-+#include <stdlib.h>
- #include <libkern/OSAtomic.h>
- static malloc_zone_t* _sqliteZone_;
- #define SQLITE_MALLOC(x) malloc_zone_malloc(_sqliteZone_, (x))
diff --git a/science/openstructure/files/patch-modules_gfx_src_offscreen__buffer.hh b/science/openstructure/files/patch-modules_gfx_src_offscreen__buffer.hh
deleted file mode 100644
index a9594f64ea1f..000000000000
--- a/science/openstructure/files/patch-modules_gfx_src_offscreen__buffer.hh
+++ /dev/null
@@ -1,11 +0,0 @@
---- modules/gfx/src/offscreen_buffer.hh.orig 2018-07-09 00:19:53 UTC
-+++ modules/gfx/src/offscreen_buffer.hh
-@@ -58,7 +58,7 @@ public:
- bool IsValid();
- */
-
--#if defined(__linux__)
-+#if defined(__linux__) || defined(__FreeBSD__)
- #if OST_MESA_SUPPORT_ENABLED
- #include "impl/mesa_offscreen_buffer.hh"
- #else
diff --git a/science/openstructure/files/patch-modules_gui_src_CMakeLists.txt b/science/openstructure/files/patch-modules_gui_src_CMakeLists.txt
deleted file mode 100644
index 880c10bb0449..000000000000
--- a/science/openstructure/files/patch-modules_gui_src_CMakeLists.txt
+++ /dev/null
@@ -1,13 +0,0 @@
---- modules/gui/src/CMakeLists.txt.orig 2018-02-27 14:29:54 UTC
-+++ modules/gui/src/CMakeLists.txt
-@@ -472,8 +472,9 @@ qt4_wrap_cpp(OST_GOSTY_MOC "gosty.hh"
- OPTIONS -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED
- -DBOOST_NO_TEMPLATE_PARTIAL_SPECIALIZATION)
-
--set(LINK LINK ${BOOST_PROGRAM_OPTIONS_LIBRARIES})
-+set(LINK LINK ${BOOST_PROGRAM_OPTIONS_LIBRARIES} ${FREEBSD_PYTHON_LIBRARY})
-
-+link_directories(${CMAKE_INSTALL_PREFIX}/lib)
- executable_libexec(NAME gosty SOURCES gosty.cc ${OST_GOSTY_MOC} ${OST_QT_RESOURCE}
- DEPENDS_ON ost_gui ${LINK})
-
diff --git a/science/openstructure/files/patch-modules_gui_src_gosty.cc b/science/openstructure/files/patch-modules_gui_src_gosty.cc
deleted file mode 100644
index de8716c2c00d..000000000000
--- a/science/openstructure/files/patch-modules_gui_src_gosty.cc
+++ /dev/null
@@ -1,11 +0,0 @@
---- modules/gui/src/gosty.cc.orig 2018-07-09 03:10:04 UTC
-+++ modules/gui/src/gosty.cc
-@@ -111,7 +111,7 @@ String setup_python_search_path(const St
- #ifdef _MSC_VER
- String loc=root+"\\lib\\"+site_pkgs.str()+"\\site-packages";
- #else
--# if (defined(__ppc64__) || defined(__x86_64__)) && !defined(__APPLE__) && !OST_UBUNTU_LAYOUT
-+# if (defined(__ppc64__) || defined(__x86_64__)) && !defined(__APPLE__) && !OST_UBUNTU_LAYOUT && !defined(__FreeBSD__)
- String loc=root+"/lib64/"+site_pkgs.str()+"/site-packages";
- # else
- String loc=root+"/lib/"+site_pkgs.str()+"/site-packages";
diff --git a/science/openstructure/files/patch-modules_img_base_src_raster__image_raster__image.cc b/science/openstructure/files/patch-modules_img_base_src_raster__image_raster__image.cc
deleted file mode 100644
index 33fc51e38bdb..000000000000
--- a/science/openstructure/files/patch-modules_img_base_src_raster__image_raster__image.cc
+++ /dev/null
@@ -1,11 +0,0 @@
---- modules/img/base/src/raster_image/raster_image.cc.orig 2018-07-09 00:06:35 UTC
-+++ modules/img/base/src/raster_image/raster_image.cc
-@@ -25,7 +25,7 @@
- */
-
- #ifndef __APPLE__
--#include <malloc.h>
-+#include <stdlib.h>
- #endif
- #include <cmath>
- #include <iostream>