diff options
65 files changed, 10191 insertions, 870 deletions
diff --git a/math/sage/Makefile b/math/sage/Makefile index fca6586ea834..ae291cefadcc 100644 --- a/math/sage/Makefile +++ b/math/sage/Makefile @@ -2,135 +2,521 @@ # $FreeBSD$ PORTNAME= sage -PORTVERSION= 6.7 -PORTREVISION= 8 +PORTVERSION= 9.1 CATEGORIES= math -MASTER_SITES= http://boxen.math.washington.edu/home/sagemath/sage-mirror/src/ \ - http://mirrors.xmission.com/sage/src/ \ - http://www-ftp.lip6.fr/pub/math/sagemath/src/ \ - http://mirrors.mit.edu/sage/src/ \ - http://www.sagemath.org/src-old/ +MASTER_SITES= https://mirrors.xmission.com/sage/src/ \ + http://mirrors.xmission.com/sage/src/ \ + https://www-ftp.lip6.fr/pub/math/sagemath/src/ \ + https://mirrors.mit.edu/sage/src/ \ + https://files.sagemath.org/src/ \ + ftp://www-ftp.lip6.fr/pub/math/sagemath/src/ PKGNAMESUFFIX= -math -MAINTAINER= stephen@FreeBSD.org +MAINTAINER= thierry@FreeBSD.org COMMENT= Open source Mathematics software -BROKEN= unfetchable -DEPRECATED= Broken for more than 6 months -EXPIRATION_DATE= 2020-06-05 - LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING.txt -BUILD_DEPENDS= bash:shells/bash \ - convert:graphics/ImageMagick6 \ - ffmpeg:multimedia/ffmpeg \ - automake:devel/automake \ - autoconf:devel/autoconf -LIB_DEPENDS= libatlas.so:math/atlas \ - liblapack.so:math/lapack -RUN_DEPENDS= bash:shells/bash - -pre-extract: - @${ECHO_MSG} - @${ECHO_MSG} Instead of installing the port, which will take a considerable amount of - @${ECHO_MSG} extra time and space, you can instead type \"make build\". Then you can move - @${ECHO_MSG} work/${PORTNAME}-${PORTVERSION} to wherever you like, and run sage from there. - @${ECHO_MSG} However, there is no guarantee that this alternative will always work. -. if !(defined(PACKAGE_BUILDING) || defined(BATCH)) - @sleep 10 -. endif - -PLIST_FILES= bin/sage -USE_TEX= latex:build -USES= gmake iconv jpeg tk perl5 - -# Optimization flags will be defined by the source -CFLAGS:= ${CFLAGS:C/^-O.*$//} -FFLAGS:= ${CFLAGS:C/^-O.*$//} - -MAKE_ENV+= SAGE_PORT=yes \ - SAGE_ATLAS_LIB=${LOCALBASE}/lib \ - DOT_SAGE=${WRKSRC}/tmp/.sage \ - SAGE_FAT_BINARY=yes \ - PERL=${PERL} - -# The following is needed for the lapack subpackage. -MAKE_ARGS+= ARCH="${AR}" +BUILD_DEPENDS= bash:shells/bash \ + dash:shells/dash \ + cmake:devel/cmake \ + dreadnaut:math/nauty \ + ${PYTHON_PKGNAMEPREFIX}alabaster>0:textproc/py-alabaster@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}Babel>0:devel/py-babel@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}bleach>0:www/py-bleach@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}brial>0:math/py-brial@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}certifi>0:security/py-certifi@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}configparser>0:devel/py-configparser@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cvxopt>0:math/py-cvxopt@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cycler>0:devel/py-cycler@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cypari2>0:math/py-cypari2@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cysignals>0:devel/py-cysignals@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}dateutil>0:devel/py-dateutil@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}decorator>0:devel/py-decorator@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}defusedxml>0:devel/py-defusedxml@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}entrypoints>0:devel/py-entrypoints@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}fpylll>0:math/py-fpylll@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}gmpy2-devel>0:math/py-gmpy2-devel@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}html5lib>0:www/py-html5lib@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}imagesize>0:graphics/py-imagesize@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}ipython5>0:devel/ipython5@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}ipython_genutils>0:devel/py-ipython_genutils@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}itsdangerous>0:security/py-itsdangerous@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}Jinja2>0i:devel/py-Jinja2@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}jupyter_core>0:devel/py-jupyter_core@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}jupyter_client>0:devel/py-jupyter_client@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}kiwisolver>0:math/py-kiwisolver@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}MarkupSafe>0:textproc/py-MarkupSafe@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}mistune>0:textproc/py-mistune@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}mpmath>0:math/py-mpmath@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}nbconvert>0:devel/py-nbconvert@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}nbformat>0:devel/py-nbformat@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR}\ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pandocfilters>0:textproc/py-pandocfilters@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pathlib2>0:devel/py-pathlib2@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pexpect>0:misc/py-pexpect@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pickleshare>0:databases/py-pickleshare@${PY_FLAVOR}\ + ${PY_PILLOW} \ + ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:devel/py-pkgconfig@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pplpy>0:math/py-pplpy@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}prometheus-client>0:net-mgmt/py-prometheus-client@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}prompt_toolkit1>0:devel/py-prompt_toolkit1@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}ptyprocess>0:sysutils/py-ptyprocess@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pytz>0:devel/py-pytz@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pyzmq>0:net/py-pyzmq@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}rpy2>0:math/py-rpy2@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}scandir>0:sysutils/py-scandir@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}send2trash>0:deskutils/py-send2trash@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}simplegeneric>0:devel/py-simplegeneric@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}snowballstemmer>0:textproc/py-snowballstemmer@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}terminado>0:net/py-terminado@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}testpath>0:devel/py-testpath@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}traitlets>0:devel/py-traitlets@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}tornado>0:www/py-tornado@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}traitlets>0:devel/py-traitlets@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}twisted>0:devel/py-twisted@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}vcversioner>0:devel/py-vcversioner@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}wcwidth>0:devel/py-wcwidth@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}webencodings>0:converters/py-webencodings@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}werkzeug>0:www/py-werkzeug@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}zope.interface>0:devel/py-zope.interface@${PY_FLAVOR}\ + fflas-ffpack-config:math/fflas-ffpack \ + gfan:math/gfan \ + git:devel/git \ + gp2c:math/gp2c \ + jmol:science/jmol \ + libatomic_ops>0:devel/libatomic_ops \ + MathJax>0:www/mathjax \ + maxima>0:math/maxima \ + p5-XML-Writer>0:textproc/p5-XML-Writer \ + p5-XML-LibXML>0:textproc/p5-XML-LibXML \ + p5-XML-LibXSLT>0:textproc/p5-XML-LibXSLT\ + p5-File-Slurp>0:devel/p5-File-Slurp \ + p5-JSON>0:converters/p5-JSON \ + p5-SVG>0:textproc/p5-SVG \ + p5-MongoDB>0:databases/p5-MongoDB \ + p5-Term-ReadLine-Gnu>0:devel/p5-Term-ReadLine-Gnu\ + palp>0:math/palp \ + pandoc:textproc/hs-pandoc \ + pari-elldata>0:math/pari_elldata\ + pari-galdata>0:math/pari_galdata\ + pari-galpol>0:math/pari_galpol \ + pari-nftables>0:math/pari_nftables \ + pari-seadata>0:math/pari_seadata\ + QuadraticSieve:math/flintqs \ + ninja:devel/ninja \ + gpatch:devel/patch \ + rubiks>0:math/rubiks \ + sympow:math/sympow \ + tachyon:graphics/tachyon \ + three.js>0:www/threejs \ + yasm:devel/yasm \ + gtar:archivers/gtar \ + convert:graphics/ImageMagick6 \ + ffmpeg:multimedia/ffmpeg \ + ${LOCALBASE}/lib/libBLT.a:x11-toolkits/blt +LIB_DEPENDS= libarb.so:math/arb \ + libboost_thread.so:devel/boost-libs \ + libbraiding.so:math/libbraiding \ + libbrial.so:math/brial \ + libCbc.so:math/cbc \ + libcdd.so:math/cddlib \ + libcliquer.so:math/cliquer \ + libcurl.so:ftp/curl \ + libec.so:math/eclib \ + libecl.so:lang/ecl \ + libecm.so:math/gmp-ecm \ + libflint.so:math/flint2 \ + libfplll.so:math/fplll \ + libfreetype.so:print/freetype2 \ + libgc.so:devel/boehm-gc \ + libgc-threaded.so:devel/boehm-gc-threaded\ + libgf2x.so:math/gf2x \ + libgivaro.so:math/givaro \ + libglpk.so:math/glpk \ + libgap.so:math/gap \ + libgmp.so:math/gmp \ + libgsl.so:math/gsl \ + libhomfly.so:math/libhomfly \ + libiml.so:math/iml \ + libisl.so:devel/isl \ + libLfunction.so:math/lcalc \ + libffi.so:devel/libffi \ + libgd.so:graphics/gd \ + libgiac.so:math/giacxcas \ + liblinbox.so:math/linbox \ + liblrcalc.so:math/lrcalc \ + liblrsgmp.so:math/lrslib \ + libm4ri.so:math/m4ri \ + libm4rie.so:math/m4rie \ + libmpc.so:math/mpc \ + libmpfi.so:math/mpfi \ + libmpfr.so:math/mpfr \ + libmpir.so:math/mpir \ + libntl.so:math/ntl \ + libpari.so:math/pari \ + libpcre.so:devel/pcre \ + libplanarity.so:math/planarity \ + libpng.so:graphics/png \ + libppl.so:devel/ppl \ + libpynac.so:math/pynac \ + libR.so:math/R \ + librw.so:math/rankwidth \ + libSingular.so:math/singular \ + libamd.so:math/suitesparse \ + libsemigroups.so:math/libsemigroups \ + libsymmetrica.so:math/symmetrica\ + libzmq.so:net/libzmq4 \ + libzn_poly-0.9.so:math/zn_poly \ + libqd.so:math/qd \ + libisl.so:devel/isl \ + libblas.so:math/blas \ + libicuuc.so:devel/icu \ + libtiff.so:graphics/tiff \ + liblapack.so:math/lapack \ + libedit.so:devel/libedit \ + libwebp.so:graphics/webp \ + libpcre2-8.so:devel/pcre2 \ + libgdbm.so:databases/gdbm \ + liblcms2.so:graphics/lcms2 \ + libopenjp2.so:graphics/openjpeg +RUN_DEPENDS= bash:shells/bash \ + dreadnaut:math/nauty \ + ${PYTHON_PKGNAMEPREFIX}alabaster>0:textproc/py-alabaster@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}Babel>0:devel/py-babel@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}bleach>0:www/py-bleach@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}brial>0:math/py-brial@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}certifi>0:security/py-certifi@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}configparser>0:devel/py-configparser@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cvxopt>0:math/py-cvxopt@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cycler>0:devel/py-cycler@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cypari2>0:math/py-cypari2@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cysignals>0:devel/py-cysignals@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}dateutil>0:devel/py-dateutil@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}decorator>0:devel/py-decorator@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}defusedxml>0:devel/py-defusedxml@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}entrypoints>0:devel/py-entrypoints@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}fpylll>0:math/py-fpylll@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}gmpy2-devel>0:math/py-gmpy2-devel@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}html5lib>0:www/py-html5lib@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}imagesize>0:graphics/py-imagesize@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}ipython5>0:devel/ipython5@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}ipython_genutils>0:devel/py-ipython_genutils@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}itsdangerous>0:security/py-itsdangerous@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}jupyter_core>0:devel/py-jupyter_core@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}jupyter_client>0:devel/py-jupyter_client@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}kiwisolver>0:math/py-kiwisolver@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}MarkupSafe>0:textproc/py-MarkupSafe@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}mistune>0:textproc/py-mistune@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}mpmath>0:math/py-mpmath@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}nbconvert>0:devel/py-nbconvert@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}nbformat>0:devel/py-nbformat@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR}\ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pandocfilters>0:textproc/py-pandocfilters@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pathlib2>0:devel/py-pathlib2@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pexpect>0:misc/py-pexpect@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pickleshare>0:databases/py-pickleshare@${PY_FLAVOR}\ + ${PY_PILLOW} \ + ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:devel/py-pkgconfig@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pplpy>0:math/py-pplpy@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}prometheus-client>0:net-mgmt/py-prometheus-client@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}prompt_toolkit1>0:devel/py-prompt_toolkit1@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}ptyprocess>0:sysutils/py-ptyprocess@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pytz>0:devel/py-pytz@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}pyzmq>0:net/py-pyzmq@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}rpy2>0:math/py-rpy2@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}scandir>0:sysutils/py-scandir@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}send2trash>0:deskutils/py-send2trash@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}simplegeneric>0:devel/py-simplegeneric@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}snowballstemmer>0:textproc/py-snowballstemmer@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}terminado>0:net/py-terminado@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}testpath>0:devel/py-testpath@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}tornado>0:www/py-tornado@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}traitlets>0:devel/py-traitlets@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}twisted>0:devel/py-twisted@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}vcversioner>0:devel/py-vcversioner@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}wcwidth>0:devel/py-wcwidth@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}webencodings>0:converters/py-webencodings@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}werkzeug>0:www/py-werkzeug@${PY_FLAVOR}\ + ${PYTHON_PKGNAMEPREFIX}zope.interface>0:devel/py-zope.interface@${PY_FLAVOR}\ + fflas-ffpack-config:math/fflas-ffpack \ + gfan:math/gfan \ + git:devel/git \ + gp2c:math/gp2c \ + jmol:science/jmol \ + MathJax>0:www/mathjax \ + maxima>0:math/maxima \ + p5-Term-ReadLine-Gnu>0:devel/p5-Term-ReadLine-Gnu\ + palp>0:math/palp \ + pandoc:textproc/hs-pandoc \ + pari-elldata>0:math/pari_elldata\ + pari-galdata>0:math/pari_galdata\ + pari-galpol>0:math/pari_galpol \ + pari-nftables>0:math/pari_nftables \ + pari-seadata>0:math/pari_seadata\ + QuadraticSieve:math/flintqs \ + rubiks>0:math/rubiks \ + sympow:math/sympow \ + tachyon:graphics/tachyon \ + three.js>0:www/threejs \ + yasm:devel/yasm \ + pixz:archivers/pixz -post-patch: -# Create wrapper for invocation of make. - @${MKDIR} ${WRKSRC}/local/bin - @${LN} -s -f ${LOCALBASE}/bin/gmake ${WRKSRC}/local/bin/make +USES= autoreconf blaslapack:openblas compiler:c++11-lib fortran \ + gettext gmake gnome iconv jpeg libtool localbase ncurses perl5 \ + pkgconfig python:3.6+ readline shebangfix sqlite tk xorg +USE_TEX= latex:build pdftex:build tex:build +USE_XORG= x11 xext xscrnsaver +USE_GNOME= cairo glib20 pango +USE_PYTHON= cython +USE_JAVA= yes # for science/jmol -# Create wrapper for invocation of ld. - @${SED} -e 's#%%LD%%#${LOCALBASE}/bin/ld#' \ - ${FILESDIR}/ld.in > ${WRKSRC}/local/bin/ld - @${CHMOD} +x ${WRKSRC}/local/bin/ld +CONFLICTS= python-3.* \ + ${PYTHON_PKGNAMEPREFIX}ipykernel5-5.* \ + ${PYTHON_PKGNAMEPREFIX}ipython-7.* \ + ${PYTHON_PKGNAMEPREFIX}ipywidgets-7.* \ + ${PYTHON_PKGNAMEPREFIX}notebook-6.* \ + ${PYTHON_PKGNAMEPREFIX}prompt_toolkit-2.* \ + ${PYTHON_PKGNAMEPREFIX}widgetsnbextension-3.5.* -post-build: - ${RM} -r ${WRKSRC}/tmp/.sage - ${CHMOD} -R a+rX ${WRKSRC} +SHEBANG_FILES= . +SHEBANG_LANG+= dash +dash_OLD_CMD= /bin/dash +dash_CMD= ${LOCALBASE}/bin/dash + +DISABLE_BINUTILS= yes -check regression-test test: build - @${ECHO_MSG} This test can also be performed after installation by typing \"sage -testall\". - @${ECHO_MSG} - cd ${WRKSRC} && ${SETENV} DOT_SAGE=${WRKSRC}/tmp/.sage ./sage -testall - ${RM} ${WRKSRC}/python*.core +LIBS= -lomp -pthread +.if !defined{WITH_DEBUG} +LDFLAGS+= -s +.endif +BLDDIR= ${WRKDIR}/build +GNU_CONFIGURE= yes +CONFIGURE_ENV= SAGE_PORT=yes CC=${CC} GCC=${CC} CXX=${CXX} AS=${AS} LD=${LD} \ + SAGE_LOCAL=${PREFIX} SAGE_DESTDIR=${BLDDIR}/ \ + DESTDIR=${BLDDIR}/${PREFIX} PATCH=${LOCALBASE}/bin/gpatch +CONFIGURE_ARGS= --with-system-gcc=force \ + --with-system-python3=yes \ + --localstatedir=/var +MAKE_ENV= MAKE=${GMAKE} DESTDIR=${BLDDIR} +REINPLACE_ARGS= -i '' +BINARY_ALIAS= patch=${LOCALBASE}/bin/gpatch +PLIST_SUB= VER=${PORTVERSION} -# Don't build docs (because of mysterious race conditions). -ALL_TARGET= build +OPTIONS_DEFINE= DOCS +PORTDOCS= * -INSTALL_SAGE_DIR= ${PREFIX}/${PORTNAME}-${PORTVERSION} -STAGED_SAGE_DIR= ${STAGEDIR}${INSTALL_SAGE_DIR} -do-install: - cd ${WRKDIR} && ${FIND} -s ${WRKSRC} | \ - ${GREP} -v '^${WRKSRC}/upstream/' | \ - ${GREP} -v '^${WRKSRC}/tmp' | \ - ${SED} -e 's#${WRKDIR}/##' | \ - ${CPIO} -pmud -R ${BINOWN}:${BINGRP} ${STAGEDIR}${PREFIX} - ${ECHO_CMD} | ${SETENV} DOT_SAGE=${STAGED_SAGE_DIR}/tmp/.sage ${STAGED_SAGE_DIR}/sage - ${RM} -r ${STAGED_SAGE_DIR}/tmp/.sage - ${SED} -e "s+#SAGE_ROOT.*+SAGE_ROOT=${INSTALL_SAGE_DIR}+" ${WRKSRC}/sage > ${STAGEDIR}${PREFIX}/bin/sage - ${CHMOD} ${BINMODE} ${STAGEDIR}${PREFIX}/bin/sage - -post-install: - @${FIND} -s ${STAGED_SAGE_DIR} -not -type d | \ - ${SED} -e 's#${STAGEDIR}${PREFIX}/##' >> ${TMPPLIST} - @${FIND} -s ${STAGED_SAGE_DIR} -type d -empty | \ - ${SED} -e 's#${STAGEDIR}${PREFIX}/#@dir #' >> ${TMPPLIST} +.if defined(PACKAGE_BUILDING) +CONFIGURE_ARGS+=--enable-build-as-root +.endif .include <bsd.port.pre.mk> -MAKE_ENV+= MAKE="${MAKE} -j${MAKE_JOBS_NUMBER}" - -.ifdef MAINTAINER_MODE -test-fbsd-patches: patch - ${RM} -r ${WRKSRC}/build/pkgs/*/src; \ - for d in ${WRKSRC}/build/pkgs/*; do \ - if ls $$d/fbsd-patch-* > /dev/null 2>&1; then \ - ${ECHO_MSG} Testing patches in $${d##*/}; \ - b=$${d##*/}-`${CAT} $$d/package-version.txt | ${SED} 's/\.p.*//'`; \ - c=${WRKSRC}/upstream/$$b.tar.bz2 ; \ - if [ ! -e $$c ]; then \ - c=${WRKSRC}/upstream/$$b.tar.gz ; \ - if [ ! -e $$c ]; then \ - ${ECHO_MSG} Couldn\'t find $$c; \ - exit 1; \ - fi; \ - fi; \ - b=`echo $$b | sed 's/python/Python/'` ; \ - if ! (cd $$d && tar xf $$c && ${MV} $$b src); then \ - ${ECHO_MSG} Unable to unarchive $$c; \ - exit 1; \ - fi; \ - if ! (cd $$d && ${CAT} fbsd-patch-* | patch); then \ - ${ECHO_MSG} Patches in $${d##*/} failed; \ - exit 1; \ - fi; \ - fi; \ - done; \ - ${RM} -r ${WRKSRC}/build/pkgs/*/src -.endif +WSDIR= ${BLDDIR}${PREFIX} +SPKG_INST= configure.ac configure build/sage_bootstrap/uninstall.py \ + build/make/install src/bin/sage-env +PY2FIX= bin lib/${PYTHON_VERSION} +DOC2FIX= .pickle .doctree +SE2FIX= ^ECLDIR= ^SINGULAR MAXIMA_PREFIX +SHR2FIX= GAP_ROOT_DIR PPLPY_DOCS SINGULARPATH +STG2FIX= bin/sage-env-config default.qepcadrc \ + share/jupyter/kernels/sagemath/kernel.json +BADLN= kernels/sagemath/doc nbextensions/jsmol \ + nbextensions/mathjax nbextensions/threejs +# External dependencies not yet handled by SageMath +PY_LIBS= alabaster babel bleach certifi configparser cvxopt cycler \ + cypari cysignals cython dateutil decorator defusedxml docutils \ + entrypoints fpylll future gmpy2 html5lib imagesize ipython \ + ipython_genutils itsdangerous jinja2 jsonschema jupyter_client \ + jupyter_core kiwisolver markupsafe matplotlib mistune mpmath \ + nbconvert nbformat networkx nose numpy packaging pandocfilters \ + pathlib2 pexpect pickleshare pillow pkgconfig pplpy \ + prometheus_client prompt_toolkit psutil ptyprocess pyparsing \ + pytz pyzmq requests rpy2 scandir scipy send2trash simplegeneric \ + six snowballstemmer sympy terminado testpath tornado traitlets \ + twisted vcversioner wcwidth webencodings werkzeug zope_interface +PY_FILES= sage_brial +JS_LIBS= jmol mathjax threejs +SPKGCM4= brial ecl gap gc giac libhomfly linbox maxima palp pynac rubiks \ + singular suitesparse sympow zn_poly + +post-patch: + ${CP} ${FILESDIR}/psutil__arch__bsd__freebsd_socks.c.patch \ + ${WRKSRC}/build/pkgs/psutil/patches/ +.for sp in ${SPKGCM4} + ${CP} ${FILESDIR}/${sp}_spkg-configure.m4 \ + ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4 +.endfor +.for sp in ${PY_LIBS} + ${CP} ${FILESDIR}/py_libs_spkg-configure.m4 \ + ${WRKSRC}/build/pkgs/${sp:C/pari2/pari/}/spkg-configure.m4 +.endfor +.for sp in ${PY_FILES} + ${SED} -e 's|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|' ${FILESDIR}/${sp}_spkg-configure.m4.in \ + > ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4 +.endfor +.for sp in ${JS_LIBS} + ${SED} -e 's|%%LOCALBASE%%|${LOCALBASE}|' ${FILESDIR}/${sp}_spkg-configure.m4.in \ + > ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4 +.endfor + +pre-configure: + ${REINPLACE_CMD} -e 's|SAGE_LOCAL="$$prefix"|SAGE_LOCAL="${WSDIR}"|' \ + -e 's|lib/pkgconfig|libdata/pkgconfig|' ${WRKSRC}/configure.ac + ${REINPLACE_CMD} -e 's|SAGE_LOCAL="@prefix@"|SAGE_LOCAL="${WSDIR}"|' \ + ${WRKSRC}/src/bin/sage-env-config.in + ${REINPLACE_CMD} -e 's|%%CFLAGS%%|${CFLAGS}|;s|%%LDFLAGS%%|${LDFLAGS}|' \ + ${WRKSRC}/build/pkgs/tachyon/patches/Make-arch.patch + ${REINPLACE_CMD} -e '/SUITESPARSE_INC_DIR/s|$${SAGE_LOCAL}/include|${LOCALBASE}/include/suitesparse|'\ + ${WRKSRC}/build/pkgs/cvxopt/spkg-install.in +.for f in ${PY_LIBS} + ${REINPLACE_CMD} -e 's|python3|${PYTHON_CMD}|;s|py_libs|${f}|' \ + ${WRKSRC}/build/pkgs/${f}/spkg-configure.m4 +.endfor + ${REINPLACE_CMD} -e 's|import cypari|import cypari2|' \ + ${WRKSRC}/build/pkgs/cypari/spkg-configure.m4 + ${REINPLACE_CMD} -e 's|import ipython|import IPython|' \ + ${WRKSRC}/build/pkgs/ipython/spkg-configure.m4 + ${REINPLACE_CMD} -e 's|import pillow|import PIL|' \ + ${WRKSRC}/build/pkgs/pillow/spkg-configure.m4 + ${REINPLACE_CMD} -e 's|import pplpy|import ppl|' \ + ${WRKSRC}/build/pkgs/pplpy/spkg-configure.m4 + ${REINPLACE_CMD} -e 's|import pyzmq|import zmq|' \ + ${WRKSRC}/build/pkgs/pyzmq/spkg-configure.m4 + ${REINPLACE_CMD} -e 's|import zope_interface|import zope.interface|' \ + ${WRKSRC}/build/pkgs/zope_interface/spkg-configure.m4 + ${REINPLACE_CMD} -e '/GAP_ROOT=/s|$$SAGE_LOCAL|${LOCALBASE}|' \ + ${WRKSRC}/build/pkgs/gap_packages/spkg-install.in + ${REINPLACE_CMD} -e "/os.path.join/s|SAGE_LOCAL|'${LOCALBASE}'|"\ + ${WRKSRC}/src/sage/libs/gap/util.pyx + ${REINPLACE_CMD} -e "/os.path.join(SAGE_LOCAL/s|SAGE_LOCAL|'${LOCALBASE}'|" \ + ${WRKSRC}/src/sage/env.py + ${REINPLACE_CMD} -e "/^library_dirs/s|SAGE_LOCAL|'${LOCALBASE}'|" \ + ${WRKSRC}/src/setup.py +.for f in ${SHR2FIX} + ${REINPLACE_CMD} -e "/${f}/s|SAGE_SHARE|'${LOCALBASE}/share/'|" \ + ${WRKSRC}/src/sage/env.py +.endfor + ${REINPLACE_CMD} -e "/JMOL_DIR/s|SAGE_SHARE|'${JAVASHAREDIR}'|" \ + -e "/JMOL_DIR/s|jmol|classes|" \ + ${WRKSRC}/src/sage/env.py + ${REINPLACE_CMD} -e "/JSMOL_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \ + -e "/JSMOL_DIR/s|jsmol|JSmol|" \ + ${WRKSRC}/src/sage/env.py + ${REINPLACE_CMD} -e "/MATHJAX_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \ + -e "/MATHJAX_DIR/s|mathjax|MathJax|" \ + ${WRKSRC}/src/sage/env.py + ${REINPLACE_CMD} -e "/THREEJS_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \ + ${WRKSRC}/src/sage/env.py +.for f in ${SE2FIX} + ${REINPLACE_CMD} -e '/${f}/s|$$SAGE_LOCAL|${LOCALBASE}|' \ + ${WRKSRC}/src/bin/sage-env +.endfor + ${REINPLACE_CMD} -e '/LDFLAGS=/s|-rpath,$$SAGE_LOCAL|-rpath,${LOCALBASE}|' \ + ${WRKSRC}/src/bin/sage-env +.for f in ${SPKG_INST} + ${REINPLACE_CMD} -e 's|/var/lib/sage|/share/libdata/${PORTNAME}|' \ + ${WRKSRC}/${f} +.endfor + (cd ${WRKSRC} && ./bootstrap) + ${MKDIR} ${BLDDIR}${PREFIX}/lib/pkgconfig # Removed thereafter + +post-build: +.for d in ${PY2FIX} + ${FIND} ${WSDIR}/${d} -type f -exec ${GREP} -I -l "${WSDIR}/bin/python" {} \; |\ + ${XARGS} ${SED} -i "" -e 's|${WSDIR}/bin/pytho.*|${PYTHON_CMD}|' +.endfor +.for d in ${PY2FIX} + ${FIND} ${WSDIR}/${d} -type f -exec ${GREP} -I -l "/usr/bin/env python" {} \; |\ + ${XARGS} ${SED} -i "" -e 's|/usr/bin/env pytho.*|${PYTHON_CMD}|' +.endfor + ${FIND} ${BLDDIR}/${PYTHON_LIBDIR} -type d -name __pycache__ | \ + ${XARGS} ${RM} -r +.for f in ${DOC2FIX} + ${FIND} ${BLDDIR}${DOCSDIR} -type f -name "*${f}" | ${XARGS} \ + ${SED} -i "" -e 's|${BLDDIR}||g' +.endfor +.for f in ${STG2FIX} + ${SED} -i "" -e 's|${BLDDIR}||g' ${BLDDIR}${PREFIX}/${f} +.endfor + ${RM} ${BLDDIR}${PYTHON_CMD} ${BADLN:C|^|${BLDDIR}${PREFIX}/share/jupyter/|} + ${RM} -r ${BLDDIR}${PREFIX}/var + ${RM} ${BLDDIR}${PREFIX}/lib64 ${BLDDIR}${PREFIX}/libdata/pkgconfig/blas.pc \ + ${BLDDIR}${PREFIX}/libdata/pkgconfig/cblas.pc \ + ${BLDDIR}${PREFIX}/libdata/pkgconfig/gsl.pc \ + ${BLDDIR}${PREFIX}/libdata/pkgconfig/lapack.pc + # Cannot use a package system for pip and setuptools + ${RM} ${BLDDIR}${PREFIX}/bin/easy_install* ${BLDDIR}${PREFIX}/bin/pip* + ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/pip-* ${BLDDIR}${PYTHON_SITELIBDIR}/pip/ + ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/setuptools* \ + ${BLDDIR}${PYTHON_SITELIBDIR}/easy_install.py \ + ${BLDDIR}${PYTHON_SITELIBDIR}/pkg_resources \ + ${BLDDIR}${PYTHON_SITELIBDIR}/__pycache__/easy_install* + # Remoce CONFLICTS with py3x-backports-1 + ${RM} ${BLDDIR}${PYTHON_SITELIBDIR}/backports/__init__.py \ + ${BLDDIR}${PYTHON_SITELIBDIR}/backports/__init__.cpython-${PYTHON_SUFFIX}.pyc + # Wont use a system package for sphinx because it would need py-sphinx18 + its dependencies + # Check https://trac.sagemath.org/ticket/28856 + ${RM} ${BLDDIR}${PREFIX}/bin/sphinx-* + ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/sphinx + ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/sphinxcontrib \ + ${BLDDIR}${PYTHON_SITELIBDIR}/Sphinx-* \ + ${BLDDIR}${PYTHON_SITELIBDIR}/sphinxcontrib_websupport-* + ${RM} -r ${BLDDIR}${PREFIX}/bin/pygmentize \ + ${BLDDIR}${PYTHON_SITELIBDIR}/Pygments-* \ + ${BLDDIR}${PYTHON_SITELIBDIR}/pygments + # ${TRUE} because compilation of some .py fails: compileall.py -q to see errors + (cd ${WSDIR} && (${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \ + -d ${PYTHONPREFIX_SITELIBDIR} -f ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;} || \ + ${TRUE})) + ${FIND} ${BLDDIR}${PREFIX} -name "*.bak" -delete + +do-install: + cd "${BLDDIR}" && ${FIND} . | ${CPIO} -pdum ${STAGEDIR} + # Remove bad links + ${LN} -sf ${DOCSDIR} \ + ${STAGEDIR}${PREFIX}/share/jupyter/kernels/sagemath/doc + ${LN} -sf ${LOCALBASE}/www/JSmol \ + ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/jsmol + ${LN} -sf ${LOCALBASE}/www/MathJax \ + ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/mathjax + ${LN} -sf ${LOCALBASE}/www/threejs \ + ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/threejs + ${RM} ${STAGEDIR}${PREFIX}/lib64 ${STAGEDIR}${PREFIX}/libdata/pkgconfig/blas.pc \ + ${STAGEDIR}${PREFIX}/libdata/pkgconfig/cblas.pc \ + ${STAGEDIR}${PREFIX}/libdata/pkgconfig/gsl.pc \ + ${STAGEDIR}${PREFIX}/libdata/pkgconfig/lapack.pc .include <bsd.port.post.mk> diff --git a/math/sage/distinfo b/math/sage/distinfo index 471cbde0c27f..aeeb92c91298 100644 --- a/math/sage/distinfo +++ b/math/sage/distinfo @@ -1,2 +1,3 @@ -SHA256 (sage-6.7.tar.gz) = da4688cb48c221356005935c666fa3eac96c50de60f3e5b274072f0520745677 -SIZE (sage-6.7.tar.gz) = 487207063 +TIMESTAMP = 1590251415 +SHA256 (sage-9.1.tar.gz) = 1ca30cc554e99910752170214e1d30576800ec897d66c77481b4eb505afefbb3 +SIZE (sage-9.1.tar.gz) = 1125768506 diff --git a/math/sage/files/brial_spkg-configure.m4 b/math/sage/files/brial_spkg-configure.m4 new file mode 100644 index 000000000000..5e85b1027432 --- /dev/null +++ b/math/sage/files/brial_spkg-configure.m4 @@ -0,0 +1,47 @@ +SAGE_SPKG_CONFIGURE([brial], [ + SAGE_SPKG_DEPCHECK([boost m4ri], [ + # If we're using the system m4ri and boost, ensure that we can + # compile and run an executable linked against both libbrial and + # libbrial_groebner (both are used by SageMath). + AC_LANG_PUSH(C++) + SAVED_LIBS=$LIBS + LIBS="$LIBS -lbrial -lbrial_groebner" + AC_MSG_CHECKING([if we can link against brial libraries]) + AC_RUN_IFELSE([ + AC_LANG_PROGRAM([ + #include <polybori.h> + #include <polybori/groebner/groebner_alg.h> + USING_NAMESPACE_PBORI + USING_NAMESPACE_PBORIGB + + class MyConstant : public BooleConstant{ + public: void negate() { this->m_value = !this->m_value; } + }; + ],[ + BoolePolyRing r = BoolePolyRing(2, COrderEnums::dlex); + ReductionStrategy rs = ReductionStrategy(r); + rs.llReduceAll(); // uses groebner lib + if (2 != r.nVariables()) { return 1; } + if (r.constant(true) == r.constant(false)) { return 2; } + MyConstant f = MyConstant(); + f.negate(); // ensures v1.1.0+ if m_value isn't const + if (!f.isOne()) { return 3; } + return 0; + ]) + ], + [ + AC_MSG_RESULT([yes]) + sage_spkg_install_brial=no + ], + [ + AC_MSG_RESULT([no]) + sage_spkg_install_brial=yes + ]) + LIBS=$SAVED_LIBS + AC_LANG_POP + ], + [ # If we're installing sage's boost or m4ri, then we have to + # install its BRiAl, too. + sage_spkg_install_brial=yes + ]) +]) diff --git a/math/sage/files/ecl_spkg-configure.m4 b/math/sage/files/ecl_spkg-configure.m4 new file mode 100644 index 000000000000..39c5b862809e --- /dev/null +++ b/math/sage/files/ecl_spkg-configure.m4 @@ -0,0 +1,6 @@ +SAGE_SPKG_CONFIGURE([ecl], [ + AC_PATH_PROG([ECL], [ecl]) + AS_IF([test x$ECL = x], [ + AC_MSG_NOTICE([ecl not found. Installing ecl]) + sage_spkg_install_ecl=yes]) +]) diff --git a/math/sage/files/gap_spkg-configure.m4 b/math/sage/files/gap_spkg-configure.m4 new file mode 100644 index 000000000000..91cd0899d21a --- /dev/null +++ b/math/sage/files/gap_spkg-configure.m4 @@ -0,0 +1,8 @@ +SAGE_SPKG_CONFIGURE([gap], [ + SAGE_SPKG_DEPCHECK([gmp], [ + AC_CHECK_HEADER([gap/system.h], [ + AC_SEARCH_LIBS([GAP_COMM], [gap], [ + ], [sage_spkg_install_gap=yes]) + ], [sage_spkg_install_gap=yes]) + ]) +]) diff --git a/math/sage/files/gc_spkg-configure.m4 b/math/sage/files/gc_spkg-configure.m4 new file mode 100644 index 000000000000..4eda93d63818 --- /dev/null +++ b/math/sage/files/gc_spkg-configure.m4 @@ -0,0 +1,6 @@ +SAGE_SPKG_CONFIGURE([gc], [ + SAGE_SPKG_DEPCHECK([libatomic_ops], [ + dnl checking with pkg-config + PKG_CHECK_MODULES([GC], [bdw-gc-threaded >= 7.6.4], [], [sage_spkg_install_gc=yes]) + ]) +]) diff --git a/math/sage/files/gcc.in b/math/sage/files/gcc.in deleted file mode 100644 index 1aa66417a30d..000000000000 --- a/math/sage/files/gcc.in +++ /dev/null @@ -1,14 +0,0 @@ -#!/bin/sh - -# This is a wrapper to redirect compiler invokations to the port of gcc that -# contains fortran. LDFLAGS needs to be added so that the linker knows where -# to find the dynamic libraries. - -# If the compiler is invoked with the argument "-v", adding LDFLAGS to the -# arguments results in an error which stops some packages being built. - -if [ "x$*" = "x-v" ]; then - exec %%CC%% "$@" -else - exec %%CC%% %%LDFLAGS%% -Wl,--copy-dt-needed-entries "$@" -fi diff --git a/math/sage/files/giac_spkg-configure.m4 b/math/sage/files/giac_spkg-configure.m4 new file mode 100644 index 000000000000..1dc4471b7ed1 --- /dev/null +++ b/math/sage/files/giac_spkg-configure.m4 @@ -0,0 +1,8 @@ +SAGE_SPKG_CONFIGURE([giac], [ + SAGE_SPKG_DEPCHECK([pari], [ + AC_CHECK_HEADER([giac/giac.h], [ + AC_SEARCH_LIBS([ConvertUTF16toUTF8], [giac], [ + ], [sage_spkg_install_giac=yes]) + ], [sage_spkg_install_giac=yes]) + ]) +]) diff --git a/math/sage/files/jmol_spkg-configure.m4.in b/math/sage/files/jmol_spkg-configure.m4.in new file mode 100644 index 000000000000..44fbb5276aa0 --- /dev/null +++ b/math/sage/files/jmol_spkg-configure.m4.in @@ -0,0 +1,10 @@ +SAGE_SPKG_CONFIGURE( + [jmol], [dnl direct testing of file existence + AC_MSG_CHECKING(JSmol installation...) + if [[ -f %%LOCALBASE%%/www/JSmol/JSmol.lite.js ]] ; then + AC_MSG_RESULT(OK) + else + AC_MSG_RESULT(KO) + sage_spkg_install_jmol=yes + fi +]) diff --git a/math/sage/files/ld.in b/math/sage/files/ld.in deleted file mode 100644 index 9161b47ccded..000000000000 --- a/math/sage/files/ld.in +++ /dev/null @@ -1,3 +0,0 @@ -#!/bin/sh - -exec %%LD%% --copy-dt-needed-entries "$@" diff --git a/math/sage/files/libhomfly_spkg-configure.m4 b/math/sage/files/libhomfly_spkg-configure.m4 new file mode 100644 index 000000000000..2f25c92534ea --- /dev/null +++ b/math/sage/files/libhomfly_spkg-configure.m4 @@ -0,0 +1,8 @@ +SAGE_SPKG_CONFIGURE([libhomfly], [ + SAGE_SPKG_DEPCHECK([gc], [ + AC_CHECK_HEADER([homfly.h], [ + AC_SEARCH_LIBS([homfly], [homfly], [ + ], [sage_spkg_install_libhomfly=yes]) + ], [sage_spkg_install_libhomfly=yes]) + ]) +]) diff --git a/math/sage/files/linbox_spkg-configure.m4 b/math/sage/files/linbox_spkg-configure.m4 new file mode 100644 index 000000000000..58e5db0b7802 --- /dev/null +++ b/math/sage/files/linbox_spkg-configure.m4 @@ -0,0 +1,6 @@ +SAGE_SPKG_CONFIGURE([linbox], [ + SAGE_SPKG_DEPCHECK([gmp givaro fflas-ffpack], [ + dnl checking with pkg-config + PKG_CHECK_MODULES([LINBOX], [linbox >= 1.6.3], [], [sage_spkg_install_linbox=yes]) + ]) +]) diff --git a/math/sage/files/mathjax_spkg-configure.m4.in b/math/sage/files/mathjax_spkg-configure.m4.in new file mode 100644 index 000000000000..5f733efb7dfc --- /dev/null +++ b/math/sage/files/mathjax_spkg-configure.m4.in @@ -0,0 +1,10 @@ +SAGE_SPKG_CONFIGURE( + [mathjax], [dnl direct testing of file existence + AC_MSG_CHECKING(MathJax installation...) + if [[ -f %%LOCALBASE%%/www/MathJax/MathJax.js ]] ; then + AC_MSG_RESULT(OK) + else + AC_MSG_RESULT(KO) + sage_spkg_install_mathjax=yes + fi +]) diff --git a/math/sage/files/maxima_spkg-configure.m4 b/math/sage/files/maxima_spkg-configure.m4 new file mode 100644 index 000000000000..26ebc1f01f28 --- /dev/null +++ b/math/sage/files/maxima_spkg-configure.m4 @@ -0,0 +1,6 @@ +SAGE_SPKG_CONFIGURE([maxima], [ + AC_PATH_PROG([MAXIMA], [maxima]) + AS_IF([test x$MAXIMA = x], [ + AC_MSG_NOTICE([maxima not found. Installing maxima]) + sage_spkg_install_maxima=yes]) +]) diff --git a/math/sage/files/optional-packages.txt b/math/sage/files/optional-packages.txt deleted file mode 100644 index 385642964d60..000000000000 --- a/math/sage/files/optional-packages.txt +++ /dev/null @@ -1,23 +0,0 @@ -Sage comes with optional packages. Unfortunately they have to be downloaded -and installed after the port is built, and preferably before the port is -installed (see note 4). But because of the security risk of downloading files -without checksums, they can only be installed manually as follows: - -cd /usr/ports/math/sage -make build -work/sage-*/sage -optional # See note 1. -work/sage-*/sage -i $OPTIONAL_PACKAGE_NAME # See note 2. -make install # See note 3. - -1. This command gives a list of the optional packages available. -2. This will download and install the optional package. Not all packages - build properly, but if they don't build they won't be installed. -3. All the files associated with the installed optional packages will be - included in the plist file, and so will be deinstalled along with - everything else when the pkg_delete command is used. -4. You can also try installing the packages AFTER the port is installed, - but for some reason this doesn't always work. - -AND - -5. Install and use these at your own risk. diff --git a/math/sage/files/palp_spkg-configure.m4 b/math/sage/files/palp_spkg-configure.m4 new file mode 100644 index 000000000000..bb82b78c8c69 --- /dev/null +++ b/math/sage/files/palp_spkg-configure.m4 @@ -0,0 +1,4 @@ +SAGE_SPKG_CONFIGURE([palp], [ + AC_PATH_PROG([PALP], [poly.x]) + AS_IF([test -z "$ac_cv_path_PALP"], [sage_spkg_install_palp=yes]) +]) diff --git a/math/sage/files/patch-bootstrap b/math/sage/files/patch-bootstrap new file mode 100644 index 000000000000..53e794d84d74 --- /dev/null +++ b/math/sage/files/patch-bootstrap @@ -0,0 +1,13 @@ +--- bootstrap.orig 2020-05-08 20:11:43 UTC ++++ bootstrap +@@ -98,7 +98,9 @@ SAGE_SPKG_CONFIGURE_$(echo ${pkgname} | tr '[a-z]' '[A + echo "$spkg_configures" >> m4/sage_spkg_configures.m4 + + SAGE_ROOT="$SAGE_ROOT" src/doc/bootstrap && \ +- install_config_rpath && \ ++ install_config_rpath ++ exit ++ # Continue with FreeBSD autoreconf + aclocal -I m4 && \ + automake --add-missing --copy build/make/Makefile-auto && \ + autoconf diff --git a/math/sage/files/patch-build_bin_sage-apply-patches b/math/sage/files/patch-build_bin_sage-apply-patches new file mode 100644 index 000000000000..1b470552c77a --- /dev/null +++ b/math/sage/files/patch-build_bin_sage-apply-patches @@ -0,0 +1,11 @@ +--- build/bin/sage-apply-patches.orig 2020-01-01 11:03:10 UTC ++++ build/bin/sage-apply-patches +@@ -67,7 +67,7 @@ if [[ -r "${patches[0]}" ]]; then + # Skip non-existing or non-readable patches + [ -r "$patch" ] || continue + echo "Applying $patch" +- patch $patch_strip $patch_args < "$patch" ++ gpatch $patch_strip $patch_args < "$patch" + if [ $? -ne 0 ]; then + echo >&2 "Error applying '$patch'" + exit 1 diff --git a/math/sage/files/patch-build_bin_sage-build-env-config.in b/math/sage/files/patch-build_bin_sage-build-env-config.in new file mode 100644 index 000000000000..26d285ae6586 --- /dev/null +++ b/math/sage/files/patch-build_bin_sage-build-env-config.in @@ -0,0 +1,9 @@ +--- build/bin/sage-build-env-config.in.orig 2020-04-14 07:43:36 UTC ++++ build/bin/sage-build-env-config.in +@@ -87,5 +87,6 @@ export SAGE_PARI_CFG="@SAGE_PARI_CFG@" + + export SAGE_GLPK_PREFIX="@SAGE_GLPK_PREFIX@" + export SAGE_FREETYPE_PREFIX="@SAGE_FREETYPE_PREFIX@" ++export SAGE_SUITESPARSE_PREFIX="@SAGE_SUITESPARSE_PREFIX@" + + export SAGE_CONFIGURE_FFLAS_FFPACK="@SAGE_CONFIGURE_FFLAS_FFPACK@" diff --git a/math/sage/files/patch-build_make_install b/math/sage/files/patch-build_make_install new file mode 100644 index 000000000000..537bc4880eb9 --- /dev/null +++ b/math/sage/files/patch-build_make_install @@ -0,0 +1,13 @@ +--- build/make/install.orig 2020-05-08 20:50:01 UTC ++++ build/make/install +@@ -28,7 +28,9 @@ if [ -z "${SAGE_ORIG_PATH_SET}" ]; then + fi + export PATH="$SAGE_ROOT/build/bin:$SAGE_SRC/bin:$SAGE_LOCAL/bin:$PATH" + +-export PYTHONPATH="$SAGE_LOCAL" ++PYTHON_SITELIBDIR=`$PYTHON_FOR_VENV -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])'` ++REL_PYTHON_SITELIBDIR=`echo $PYTHON_SITELIBDIR | sed -e "s|$PYTHONBASE||"` ++export PYTHONPATH="$SAGE_LOCAL:$SAGE_LOCAL$REL_PYTHON_SITELIBDIR:$PYTHON_SITELIBDIR" + + ############################################################################### + # Skip the rest if nothing to do (i.e., to [re]build). diff --git a/math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4 b/math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4 new file mode 100644 index 000000000000..2d42a2d019bd --- /dev/null +++ b/math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4 @@ -0,0 +1,23 @@ +--- build/pkgs/cddlib/spkg-configure.m4.orig 2020-04-27 18:08:24 UTC ++++ build/pkgs/cddlib/spkg-configure.m4 +@@ -24,13 +24,13 @@ SAGE_SPKG_CONFIGURE([cddlib], [ + dnl check, passing up a chance to detect cddlib on Fedora and Debian + dnl for now. Once all of cddlib's consumers know about the new (or + dnl both) locations, we can update this check to support them. +- AC_CHECK_HEADER([cdd.h],[],[sage_spkg_install_cddlib=yes],[ +- #include <setoper.h> +- #include <cddmp.h> ++ AC_CHECK_HEADER([cdd/cdd.h],[ ++ dnl Both lattE and gfan try to link against libcddgmp (as ++ dnl opposed to libcdd). ++ AC_SEARCH_LIBS([dd_abs],[cddgmp],[],[sage_spkg_install_cddlib=yes]) ++ ],[sage_spkg_install_cddlib=yes],[ ++ #include <cdd/setoper.h> ++ #include <cdd/cddmp.h> + ]) +- +- dnl Both lattE and gfan try to link against libcddgmp (as +- dnl opposed to libcdd). +- AC_SEARCH_LIBS([dd_abs],[cddgmp],[],[sage_spkg_install_cddlib=yes]) + ]) + ]) diff --git a/math/sage/files/patch-build_pkgs_eclib_spkg-install b/math/sage/files/patch-build_pkgs_eclib_spkg-install deleted file mode 100644 index dae4c2e18a98..000000000000 --- a/math/sage/files/patch-build_pkgs_eclib_spkg-install +++ /dev/null @@ -1,12 +0,0 @@ ---- build/pkgs/eclib/spkg-install-orig 2015-04-15 23:32:22.643814000 +0000 -+++ build/pkgs/eclib/spkg-install 2015-04-15 23:33:02.634085000 +0000 -@@ -60,6 +60,9 @@ - - echo - echo "Now configuring eclib..." -+aclocal -+automake --add-missing -+autoconf - ./configure --prefix="$SAGE_LOCAL" \ - --with-ntl="$SAGE_LOCAL" \ - --with-pari="$SAGE_LOCAL" \ diff --git a/math/sage/files/patch-build_pkgs_git_spkg-install b/math/sage/files/patch-build_pkgs_git_spkg-install deleted file mode 100644 index 61e0c8d4411a..000000000000 --- a/math/sage/files/patch-build_pkgs_git_spkg-install +++ /dev/null @@ -1,21 +0,0 @@ ---- build/pkgs/git/spkg-install.orig 2015-05-17 22:46:55.000000000 +0000 -+++ build/pkgs/git/spkg-install 2015-05-24 22:10:32.517077000 +0000 -@@ -69,7 +69,8 @@ - --libexecdir="$SAGE_LOCAL"/libexec \ - --with-python="$SAGE_LOCAL"/bin/python \ - --without-tcltk \ -- --with-sane-tool-path= -+ --with-sane-tool-path= \ -+ --with-perl=$PERL - if [ $? -ne 0 ]; then - echo >&2 "Error configuring git." - exit 1 -@@ -77,7 +78,7 @@ - - - echo "Building git..." --$MAKE $gettext -+$MAKE PTHREAD_LIBS=-lpthread $gettext - if [ $? -ne 0 ]; then - echo >&2 "Error building git." - exit 1 diff --git a/math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4 b/math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4 new file mode 100644 index 000000000000..9bb727698838 --- /dev/null +++ b/math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4 @@ -0,0 +1,18 @@ +--- build/pkgs/gsl/spkg-configure.m4.orig 2020-05-27 14:11:57 UTC ++++ build/pkgs/gsl/spkg-configure.m4 +@@ -2,15 +2,6 @@ SAGE_SPKG_CONFIGURE([gsl], [ + m4_pushdef([SAGE_GSL_MINVER],["2.4"]) + SAGE_SPKG_DEPCHECK([atlas openblas], [ + PKG_CHECK_MODULES([GSL], [gsl >= $SAGE_GSL_MINVER], [ +- PKG_CHECK_VAR([GSLPCDIR], [gsl], [pcfiledir], [ +- GSL_PC="$GSLPCDIR"/gsl.pc +- AC_SUBST([SAGE_SYSTEM_FACADE_PC_FILES]) +- AS_VAR_APPEND([SAGE_SYSTEM_FACADE_PC_FILES], [" \$(SAGE_PKGCONFIG)/gsl.pc"]) +- AC_SUBST([SAGE_GSL_PC_COMMAND],["\$(SED) -e 's/\$\${GSL_CBLAS_LIB}//' -e \"s/^GSL_CBLAS_LIB=.*/Requires: cblas/\" \"$GSL_PC\" > \"\$(@)\""]) +- ], [ +- AC_MSG_WARN([Unable to locate the directory of gsl.pc. This should not happen!]) +- sage_spkg_install_gsl=yes +- ]) + ], [sage_spkg_install_gsl=yes]) + ]) + m4_popdef([SAGE_GSL_MINVER]) diff --git a/math/sage/files/patch-build_pkgs_iml_spkg-install b/math/sage/files/patch-build_pkgs_iml_spkg-install deleted file mode 100644 index 13ddcc66e1d3..000000000000 --- a/math/sage/files/patch-build_pkgs_iml_spkg-install +++ /dev/null @@ -1,20 +0,0 @@ ---- build/pkgs/iml/spkg-install-orig 2014-12-06 21:45:54.000000000 +0000 -+++ build/pkgs/iml/spkg-install 2014-12-06 21:50:08.000000000 +0000 -@@ -18,6 +18,7 @@ - fi - done - -+export CFLAGS="-I${LOCALBASE}/include $CFLAGS" - - if [ "$SAGE_DEBUG" = "yes" ]; then - echo "Building a debug version of IML." -@@ -38,6 +39,9 @@ - EXTRA_BLAS="--with-cblas=-lcblas" - fi - -+aclocal -+automake --add-missing -+autoconf - ./configure --prefix="$SAGE_LOCAL" --libdir="$SAGE_LOCAL/lib" \ - --enable-shared --with-default="$SAGE_LOCAL" "$EXTRA_BLAS" - if [ $? -ne 0 ]; then diff --git a/math/sage/files/patch-build_pkgs_libgap_spkg-install b/math/sage/files/patch-build_pkgs_libgap_spkg-install deleted file mode 100644 index b09183fe9ff9..000000000000 --- a/math/sage/files/patch-build_pkgs_libgap_spkg-install +++ /dev/null @@ -1,12 +0,0 @@ ---- build/pkgs/libgap/spkg-install-orig 2014-05-15 02:28:13.000000000 +0000 -+++ build/pkgs/libgap/spkg-install 2014-05-15 02:29:05.000000000 +0000 -@@ -42,6 +42,9 @@ - done - - echo "Configuring libGAP..." -+aclocal -+automake --add-missing -+autoconf - ./configure --disable-static \ - CFLAGS="$CFLAGS" CXXFLAGS="$CXXFLAGS" CPPFLAGS="$CPPFLAGS" \ - --with-gap_system_arch="$GAParch_system" \ diff --git a/math/sage/files/patch-build_pkgs_m4rie_spkg-install b/math/sage/files/patch-build_pkgs_m4rie_spkg-install deleted file mode 100644 index e87383ed340c..000000000000 --- a/math/sage/files/patch-build_pkgs_m4rie_spkg-install +++ /dev/null @@ -1,12 +0,0 @@ ---- build/pkgs/m4rie/spkg-install-orig 2014-12-06 21:51:23.000000000 +0000 -+++ build/pkgs/m4rie/spkg-install 2014-12-06 21:51:46.000000000 +0000 -@@ -51,6 +51,9 @@ - # build M4RIE - - cd $ROOT_DIR/src/ -+aclocal -+automake --add-missing -+autoconf - ./configure \ - --prefix="$SAGE_LOCAL" \ - --libdir="$SAGE_LOCAL/lib" \ diff --git a/math/sage/files/patch-build_pkgs_maxima_fbsd-patch-src_interfaces_xmaxima_Makefile.in b/math/sage/files/patch-build_pkgs_maxima_fbsd-patch-src_interfaces_xmaxima_Makefile.in deleted file mode 100644 index 68baa306ced4..000000000000 --- a/math/sage/files/patch-build_pkgs_maxima_fbsd-patch-src_interfaces_xmaxima_Makefile.in +++ /dev/null @@ -1,23 +0,0 @@ ---- /dev/null 2014-01-29 03:00:00.000000000 +0000 -+++ build/pkgs/maxima/fbsd-patch-src_interfaces_xmaxima_Makefile.in 2014-01-29 03:01:19.000000000 +0000 -@@ -0,0 +1,20 @@ -+--- src/interfaces/xmaxima/Makefile.in-orig 2013-05-09 02:26:31.000000000 +0000 -++++ src/interfaces/xmaxima/Makefile.in 2013-05-09 02:30:12.000000000 +0000 -+@@ -624,14 +624,10 @@ -+ tclIndex:: $(TKSOURCES) -+ echo "source ../ObjTcl/Object.tcl; auto_mkindex . $(TKSOURCES)" | $(TCLSH) -+ -+-# Create Tkmaxima/tclIndex if tclsh is available. Otherwise, create empty file -+-# to satisfy make. -++# Create empty Tkmaxima/tclIndex, because attempting to create it using tclsh -++# seems to soak up huge amounts of resources. -+ Tkmaxima/tclIndex: $(TKSOURCES) -+- $(TCLSH) < /dev/null > /dev/null 2>&1 && \ -+- (cd Tkmaxima ; \ -+- echo "source ../ObjTcl/Object.tcl; auto_mkindex . $(ALLFILES)" | \ -+- $(TCLSH)) || \ -+- touch Tkmaxima/tclIndex -++ touch Tkmaxima/tclIndex -+ -+ FORCE: -+ # Tell versions [3.59,3.63) of GNU make to not export all variables. diff --git a/math/sage/files/patch-build_pkgs_maxima_spkg-install b/math/sage/files/patch-build_pkgs_maxima_spkg-install deleted file mode 100644 index c4803985d262..000000000000 --- a/math/sage/files/patch-build_pkgs_maxima_spkg-install +++ /dev/null @@ -1,11 +0,0 @@ ---- build/pkgs/maxima/spkg-install-orig 2014-12-06 21:53:38.000000000 +0000 -+++ build/pkgs/maxima/spkg-install 2014-12-06 21:54:40.000000000 +0000 -@@ -51,6 +51,8 @@ - ./configure --prefix="$SAGE_LOCAL" --libdir="$SAGE_LOCAL/lib" --enable-ecl git_found=false - check_error "Failed to configure Maxima." - -+# Remove extraneous spaces created in some of the flags passed to cc -+sed -i.bak 's/" /"/' src/autoconf-variables.lisp - - # Touching html and info files to avoid to regenerate them. - # This must be done after configuration since the timestamps need diff --git a/math/sage/files/patch-build_pkgs_ncurses_fbsd-patch-src_configure b/math/sage/files/patch-build_pkgs_ncurses_fbsd-patch-src_configure deleted file mode 100644 index a03c393c98de..000000000000 --- a/math/sage/files/patch-build_pkgs_ncurses_fbsd-patch-src_configure +++ /dev/null @@ -1,14 +0,0 @@ ---- /dev/null 2014-01-29 03:00:00.000000000 +0000 -+++ build/pkgs/ncurses/fbsd-patch-src_configure 2014-01-29 03:01:19.000000000 +0000 -@@ -0,0 +1,11 @@ -+--- src/configure.orig 2013-08-21 02:51:59.000000000 +0000 -++++ src/configure 2013-08-21 02:53:23.000000000 +0000 -+@@ -5719,7 +5719,7 @@ -+ cf_cv_shared_soname='`basename $@`' -+ fi -+ -+- MK_SHARED_LIB='${LD} -shared -Bshareable -soname=`basename $@` -o $@' -++ MK_SHARED_LIB='${CC} -shared -Bshareable -Wl,-soname=`basename $@` -o $@' -+ ;; -+ netbsd*) #(vi -+ CC_SHARED_OPTS="$CC_SHARED_OPTS -DPIC" diff --git a/math/sage/files/patch-build_pkgs_numpy_fbsd-patch-src_numpy_distutils_system_info.py b/math/sage/files/patch-build_pkgs_numpy_fbsd-patch-src_numpy_distutils_system_info.py deleted file mode 100644 index 65c42935e4c4..000000000000 --- a/math/sage/files/patch-build_pkgs_numpy_fbsd-patch-src_numpy_distutils_system_info.py +++ /dev/null @@ -1,16 +0,0 @@ ---- /dev/null 2014-01-29 03:00:00.000000000 +0000 -+++ build/pkgs/numpy/fbsd-patch-src_numpy_distutils_system_info.py 2014-01-29 03:01:19.000000000 +0000 -@@ -0,0 +1,13 @@ -+--- src/numpy/distutils/system_info.py.orig 2013-02-09 21:04:56.000000000 +0000 -++++ src/numpy/distutils/system_info.py 2013-05-27 21:51:12.000000000 +0000 -+@@ -983,8 +983,8 @@ -+ dir_env_var = 'ATLAS' -+ _lib_names = ['f77blas', 'cblas'] -+ if sys.platform[:7] == 'freebsd': -+- _lib_atlas = ['atlas_r'] -+- _lib_lapack = ['alapack_r'] -++ _lib_atlas = ['atlas'] -++ _lib_lapack = ['alapack'] -+ else: -+ _lib_atlas = ['atlas'] -+ _lib_lapack = ['lapack'] diff --git a/math/sage/files/patch-build_pkgs_ppl_fbsd-patch-src_demos_ppl_lpsol_ppl_lpsol.c b/math/sage/files/patch-build_pkgs_ppl_fbsd-patch-src_demos_ppl_lpsol_ppl_lpsol.c deleted file mode 100644 index a25b8d03422e..000000000000 --- a/math/sage/files/patch-build_pkgs_ppl_fbsd-patch-src_demos_ppl_lpsol_ppl_lpsol.c +++ /dev/null @@ -1,14 +0,0 @@ ---- /dev/null 2014-01-29 03:00:00.000000000 +0000 -+++ build/pkgs/ppl/fbsd-patch-src_demos_ppl_lpsol_ppl_lpsol.c 2014-01-29 03:01:19.000000000 +0000 -@@ -0,0 +1,11 @@ -+--- src/demos/ppl_lpsol/ppl_lpsol.c.orig 2013-06-20 17:21:39.000000000 +0000 -++++ src/demos/ppl_lpsol/ppl_lpsol.c 2013-06-20 17:39:44.000000000 +0000 -+@@ -534,7 +534,7 @@ -+ if (getrlimit(RLIMIT_AS, &t) != 0) -+ fatal("getrlimit failed: %s", strerror(errno)); -+ -+- if (bytes < t.rlim_cur) { -++ if (bytes < (unsigned long)(t.rlim_cur)) { -+ t.rlim_cur = bytes; -+ if (setrlimit(RLIMIT_AS, &t) != 0) -+ fatal("setrlimit failed: %s", strerror(errno)); diff --git a/math/sage/files/patch-build_pkgs_ppl_spkg-install b/math/sage/files/patch-build_pkgs_ppl_spkg-install deleted file mode 100644 index 060bbc890476..000000000000 --- a/math/sage/files/patch-build_pkgs_ppl_spkg-install +++ /dev/null @@ -1,13 +0,0 @@ ---- build/pkgs/ppl/spkg-install-orig 2015-03-04 03:45:31.000000000 +0000 -+++ build/pkgs/ppl/spkg-install 2015-03-04 03:32:09.000000000 +0000 -@@ -36,6 +36,10 @@ - fi - done - -+aclocal -+automake --add-missing -+autoconf -+ - # Enable only what's needed for Sage - PPL_CONFIGURE="--enable-coefficients=mpz --disable-fpmath $PPL_CONFIGURE" - diff --git a/math/sage/files/patch-build_pkgs_pynac_spkg-install b/math/sage/files/patch-build_pkgs_pynac_spkg-install deleted file mode 100644 index f8ae8f5a32e2..000000000000 --- a/math/sage/files/patch-build_pkgs_pynac_spkg-install +++ /dev/null @@ -1,15 +0,0 @@ ---- build/pkgs/pynac/spkg-install.orig 2014-05-06 11:21:42.000000000 +0000 -+++ build/pkgs/pynac/spkg-install 2014-07-21 04:36:42.000000000 +0000 -@@ -31,8 +31,12 @@ - - build_pynac() - { -+ chmod -R g-w ${PYNACDIR} - cd ${PYNACDIR} - PKG_CONFIG_PATH=${SAGE_LOCAL}/lib/pkgconfig; export PKG_CONFIG_PATH -+ aclocal -+ automake --add-missing -+ autoconf - ./configure --disable-static --prefix=${SAGE_LOCAL} --libdir="$SAGE_LOCAL/lib" - $MAKE - if [ $? -ne 0 ]; then diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Doc-library-fcntl.rst b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Doc-library-fcntl.rst deleted file mode 100644 index e2604193e866..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Doc-library-fcntl.rst +++ /dev/null @@ -1,13 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_Doc__library__fcntl.rst 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,10 @@ -+--- src/./Doc/library/fcntl.rst.orig 2014-07-03 21:53:41.473098625 +1000 -++++ src/./Doc/library/fcntl.rst 2014-07-03 21:54:04.342833056 +1000 -+@@ -50,7 +50,6 @@ -+ operations are typically defined in the library module :mod:`termios` and the -+ argument handling is even more complicated. -+ -+- The op parameter is limited to values that can fit in 32-bits. -+ Additional constants of interest for use as the *op* argument can be -+ found in the :mod:`termios` module, under the same names as used in -+ the relevant C header files. diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib__distutils__unixccompiler.py b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib__distutils__unixccompiler.py deleted file mode 100644 index 8987d81abf37..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib__distutils__unixccompiler.py +++ /dev/null @@ -1,18 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_Lib__distutils__unixccompiler.py 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,15 @@ -+# Description: Some python extensions can't be compiled with clang 3.4 -+# Issue ID: http://bugs.python.org/issue20767 -+# Submitted by: antoine -+ -+--- src/./Lib/distutils/unixccompiler.py.orig 2013-11-10 07:36:40.000000000 +0000 -++++ src/./Lib/distutils/unixccompiler.py 2014-02-19 15:41:48.000000000 +0000 -+@@ -228,6 +228,8 @@ -+ if sys.platform[:6] == "darwin": -+ # MacOSX's linker doesn't understand the -R flag at all -+ return "-L" + dir -++ elif sys.platform[:7] == "freebsd": -++ return "-Wl,-rpath=" + dir -+ elif sys.platform[:5] == "hp-ux": -+ if self._is_gcc(compiler): -+ return ["-Wl,+s", "-L" + dir] diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib_distutils_command_build_scripts.py b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib_distutils_command_build_scripts.py deleted file mode 100644 index bc336ce06ada..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib_distutils_command_build_scripts.py +++ /dev/null @@ -1,20 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_Lib_distutils_command_build_scripts.py 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,17 @@ -+# Description: A non-invasive partial backport of the Python3 distutils behaviour. -+# This allows Python's scripts to be properly suffixed (similar to Python 3.x) on -+# installation. -+# Submitted by: mva -+ -+--- src/Lib/distutils/command/build_scripts.py.orig 2014-07-26 11:52:20.000000000 +0200 -++++ src/Lib/distutils/command/build_scripts.py 2014-07-26 11:52:56.000000000 +0200 -+@@ -126,6 +126,9 @@ -+ file, oldmode, newmode) -+ os.chmod(file, newmode) -+ -++ # XXX should we modify self.outfiles? -++ return outfiles -++ -+ # copy_scripts () -+ -+ # class build_scripts diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Makefile.pre.in b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Makefile.pre.in deleted file mode 100644 index 730c388b82fa..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Makefile.pre.in +++ /dev/null @@ -1,21 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_Makefile.pre.in 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,18 @@ -+# Description: Link scripts in the same way Python3 does -+# Submitted by: mva -+ -+--- src/Makefile.pre.in.orig 2014-06-30 04:05:39.000000000 +0200 -++++ src/Makefile.pre.in 2014-07-26 11:09:46.000000000 +0200 -+@@ -868,6 +868,12 @@ -+ (cd $(DESTDIR)$(LIBPC); $(LN) -s python-$(VERSION).pc python2.pc) -+ -rm -f $(DESTDIR)$(LIBPC)/python.pc -+ (cd $(DESTDIR)$(LIBPC); $(LN) -s python2.pc python.pc) -++ -rm -f $(DESTDIR)$(BINDIR)/idle -++ (cd $(DESTDIR)$(BINDIR); $(LN) -s idle$(VERSION) idle2) -++ -rm -f $(DESTDIR)$(BINDIR)/pydoc -++ (cd $(DESTDIR)$(BINDIR); $(LN) -s pydoc$(VERSION) pydoc2) -++ -rm -f $(DESTDIR)$(BINDIR)/2to3 -++ (cd $(DESTDIR)$(BINDIR); $(LN) -s 2to3-$(VERSION) 2to3) -+ -+ # Install the interpreter with $(VERSION) affixed -+ # This goes into $(exec_prefix) diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-_ctypes-libffi-configure b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-_ctypes-libffi-configure deleted file mode 100644 index a768a6fa65cf..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-_ctypes-libffi-configure +++ /dev/null @@ -1,25 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_Modules-_ctypes-libffi-configure 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,22 @@ -+--- src/Modules/_ctypes/libffi/configure.orig 2010-03-19 19:59:20.000000000 +0100 -++++ src/Modules/_ctypes/libffi/configure 2011-03-06 09:20:16.000000000 +0100 -+@@ -6289,7 +6289,7 @@ -+ rm -rf conftest* -+ ;; -+ -+-x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \ -++amd64-*-freebsd*|x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \ -+ s390*-*linux*|s390*-*tpf*|sparc*-*linux*) -+ # Find out which ABI we are using. -+ echo 'int i;' > conftest.$ac_ext -+@@ -11275,6 +11275,9 @@ -+ powerpc-*-freebsd*) -+ TARGET=POWERPC_FREEBSD; TARGETDIR=powerpc -+ ;; -++ powerpc64-*-freebsd*) -++ TARGET=POWERPC; TARGETDIR=powerpc -++ ;; -+ powerpc*-*-rtems*) -+ TARGET=POWERPC; TARGETDIR=powerpc -+ ;; -+ diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-fcntlmodule.c b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-fcntlmodule.c deleted file mode 100644 index 03bee69c9459..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-fcntlmodule.c +++ /dev/null @@ -1,56 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_Modules__fcntlmodule.c 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,53 @@ -+--- src/./Modules/fcntlmodule.c.orig 2014-07-03 21:57:10.429953240 +1000 -++++ src/./Modules/fcntlmodule.c 2014-07-03 21:59:36.517210444 +1000 -+@@ -98,20 +98,15 @@ -+ { -+ #define IOCTL_BUFSZ 1024 -+ int fd; -+- /* In PyArg_ParseTuple below, we use the unsigned non-checked 'I' -++ /* In PyArg_ParseTuple below, we use the unsigned non-checked 'k' -+ format for the 'code' parameter because Python turns 0x8000000 -+ into either a large positive number (PyLong or PyInt on 64-bit -+ platforms) or a negative number on others (32-bit PyInt) -+ whereas the system expects it to be a 32bit bit field value -+ regardless of it being passed as an int or unsigned long on -+- various platforms. See the termios.TIOCSWINSZ constant across -+- platforms for an example of this. -+- -+- If any of the 64bit platforms ever decide to use more than 32bits -+- in their unsigned long ioctl codes this will break and need -+- special casing based on the platform being built on. -++ various platforms. -+ */ -+- unsigned int code; -++ unsigned long code; -+ int arg; -+ int ret; -+ char *str; -+@@ -119,7 +114,7 @@ -+ int mutate_arg = 1; -+ char buf[IOCTL_BUFSZ+1]; /* argument plus NUL byte */ -+ -+- if (PyArg_ParseTuple(args, "O&Iw#|i:ioctl", -++ if (PyArg_ParseTuple(args, "O&kw#|i:ioctl", -+ conv_descriptor, &fd, &code, -+ &str, &len, &mutate_arg)) { -+ char *arg; -+@@ -170,7 +165,7 @@ -+ } -+ -+ PyErr_Clear(); -+- if (PyArg_ParseTuple(args, "O&Is#:ioctl", -++ if (PyArg_ParseTuple(args, "O&ks#:ioctl", -+ conv_descriptor, &fd, &code, &str, &len)) { -+ if (len > IOCTL_BUFSZ) { -+ PyErr_SetString(PyExc_ValueError, -+@@ -192,7 +187,7 @@ -+ PyErr_Clear(); -+ arg = 0; -+ if (!PyArg_ParseTuple(args, -+- "O&I|i;ioctl requires a file or file descriptor," -++ "O&k|i;ioctl requires a file or file descriptor," -+ " an integer and optionally an integer or buffer argument", -+ conv_descriptor, &fd, &code, &arg)) { -+ return NULL; diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules___ctypes__libffi__src__arm__ffi.c b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules___ctypes__libffi__src__arm__ffi.c deleted file mode 100644 index 456443a692a5..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules___ctypes__libffi__src__arm__ffi.c +++ /dev/null @@ -1,39 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_Modules___ctypes__libffi__src__arm__ffi.c 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,36 @@ -+# Description: Fix _ctypes abort on import for FreeBSD/ARM. This is an issue -+# for anything !apple that is using the libcompiler_rt provided by clang on arm -+# PR: ports/149167 ports/184517 -+# Patch by: cognet@ (to be upstreamed @ LLVM) -+ -+--- src/./Modules/_ctypes/libffi/src/arm/ffi.c.orig 2013-11-10 18:36:41.000000000 +1100 -++++ src/./Modules/_ctypes/libffi/src/arm/ffi.c 2013-12-03 18:05:51.461078888 +1100 -+@@ -33,6 +33,11 @@ -+ -+ #include <stdlib.h> -+ -++#if defined(__FreeBSD__) && defined(__arm__) -++#include <sys/types.h> -++#include <machine/sysarch.h> -++#endif -++ -+ /* Forward declares. */ -+ static int vfp_type_p (ffi_type *); -+ static void layout_vfp_args (ffi_cif *); -+@@ -582,6 +587,16 @@ -+ -+ #else -+ -++#if defined(__FreeBSD__) && defined(__arm__) -++#define __clear_cache(start, end) do { \ -++ struct arm_sync_icache_args ua; \ -++ \ -++ ua.addr = (uintptr_t)(start); \ -++ ua.len = (char *)(end) - (char *)start; \ -++ sysarch(ARM_SYNC_ICACHE, &ua); \ -++ } while (0); -++#endif -++ -+ #define FFI_INIT_TRAMPOLINE(TRAMP,FUN,CTX) \ -+ ({ unsigned char *__tramp = (unsigned char*)(TRAMP); \ -+ unsigned int __fun = (unsigned int)(FUN); \ diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_issue21166 b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_issue21166 deleted file mode 100644 index 54261f51da5c..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_issue21166 +++ /dev/null @@ -1,77 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_issue21166 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,74 @@ -+# HG changeset patch -+# User Ned Deily <nad@acm.org> -+# Date 1408739459 25200 -+# Node ID edb6b282469ea0e8f819d0310afb2937b59dd6b9 -+# Parent 727fd4ead3fd854e900ed89362714ad1f7434e5a -+Issue #21166: Prevent possible segfaults and other random failures of -+python --generate-posix-vars in pybuilddir.txt build target by ensuring -+that pybuilddir.txt is always regenerated when configure is run and -+that the newly built skeleton python does not inadvertently import -+modules from previously installed instances. -+ -+diff --git a/Makefile.pre.in b/Makefile.pre.in -+--- src/Makefile.pre.in -++++ src/Makefile.pre.in -+@@ -447,8 +447,18 @@ platform: $(BUILDPYTHON) pybuilddir.txt -+ # Create build directory and generate the sysconfig build-time data there. -+ # pybuilddir.txt contains the name of the build dir and is used for -+ # sys.path fixup -- see Modules/getpath.c. -++# Since this step runs before shared modules are built, try to avoid bootstrap -++# problems by creating a dummy pybuildstr.txt just to allow interpreter -++# initialization to succeed. It will be overwritten by generate-posix-vars -++# or removed in case of failure. -+ pybuilddir.txt: $(BUILDPYTHON) -+- $(RUNSHARED) $(PYTHON_FOR_BUILD) -S -m sysconfig --generate-posix-vars -++ @echo "none" > ./pybuilddir.txt -++ $(RUNSHARED) $(PYTHON_FOR_BUILD) -S -m sysconfig --generate-posix-vars ;\ -++ if test $$? -ne 0 ; then \ -++ echo "generate-posix-vars failed" ; \ -++ rm -f ./pybuilddir.txt ; \ -++ exit 1 ; \ -++ fi -+ -+ # Build the shared modules -+ # Under GNU make, MAKEFLAGS are sorted and normalized; the 's' for -+diff --git a/Misc/NEWS b/Misc/NEWS -+--- src/Misc/NEWS -++++ src/Misc/NEWS -+@@ -120,6 +120,9 @@ Build -+ - Issue #15759: "make suspicious", "make linkcheck" and "make doctest" in Doc/ -+ now display special message when and only when there are failures. -+ -++- Issue #21166: Prevent possible segfaults and other random failures of -++ python --generate-posix-vars in pybuilddir.txt build target. -++ -+ Windows -+ ------- -+ -+diff --git a/configure b/configure -+--- src/configure -++++ src/configure -+@@ -2857,6 +2857,9 @@ case $host_os in *\ *) host_os=`echo "$h -+ -+ -+ -++# pybuilddir.txt will be created by --generate-posix-vars in the Makefile -++rm -f pybuilddir.txt -++ -+ if test "$cross_compiling" = yes; then -+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for python interpreter for cross build" >&5 -+ $as_echo_n "checking for python interpreter for cross build... " >&6; } -+diff --git a/configure.ac b/configure.ac -+--- src/configure.ac -++++ src/configure.ac -+@@ -16,6 +16,9 @@ AC_CANONICAL_HOST -+ AC_SUBST(build) -+ AC_SUBST(host) -+ -++# pybuilddir.txt will be created by --generate-posix-vars in the Makefile -++rm -f pybuilddir.txt -++ -+ if test "$cross_compiling" = yes; then -+ AC_MSG_CHECKING([for python interpreter for cross build]) -+ if test -z "$PYTHON_FOR_BUILD"; then -+ diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_pr192365 b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_pr192365 deleted file mode 100644 index 1458f887102e..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_pr192365 +++ /dev/null @@ -1,61 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_pr192365 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,58 @@ -+# Description: do not define __BSD_VISIBLE/_XOPEN_SOURCE/_POSIX_C_SOURCE -+# in include/python2.7/pyconfig.h -+# Submitted by: antoine -+ -+--- src/configure.orig 2014-09-06 14:42:50 UTC -++++ src/configure -+@@ -2919,13 +2919,6 @@ -+ -+ -+ # The later defininition of _XOPEN_SOURCE and _POSIX_C_SOURCE disables -+-# certain features on FreeBSD, so we need __BSD_VISIBLE to re-enable -+-# them. -+- -+-$as_echo "#define __BSD_VISIBLE 1" >>confdefs.h -+- -+- -+-# The later defininition of _XOPEN_SOURCE and _POSIX_C_SOURCE disables -+ # u_int on Irix 5.3. Defining _BSD_TYPES brings it back. -+ -+ $as_echo "#define _BSD_TYPES 1" >>confdefs.h -+@@ -3293,9 +3286,8 @@ -+ # but used in struct sockaddr.sa_family. Reported by Tim Rice. -+ SCO_SV/3.2) -+ define_xopen_source=no;; -+- # On FreeBSD 4, the math functions C89 does not cover are never defined -+- # with _XOPEN_SOURCE and __BSD_VISIBLE does not re-enable them. -+- FreeBSD/4.*) -++ # On FreeBSD, defining _XOPEN_SOURCE to 600 requests a strict environment. -++ FreeBSD/*) -+ define_xopen_source=no;; -+ # On MacOS X 10.2, a bug in ncurses.h means that it craps out if -+ # _XOPEN_EXTENDED_SOURCE is defined. Apparently, this is fixed in 10.3, which -+--- src/configure.ac.orig 2014-09-06 14:42:50 UTC -++++ src/configure.ac -+@@ -88,11 +88,6 @@ -+ AC_DEFINE(_NETBSD_SOURCE, 1, [Define on NetBSD to activate all library features]) -+ -+ # The later defininition of _XOPEN_SOURCE and _POSIX_C_SOURCE disables -+-# certain features on FreeBSD, so we need __BSD_VISIBLE to re-enable -+-# them. -+-AC_DEFINE(__BSD_VISIBLE, 1, [Define on FreeBSD to activate all library features]) -+- -+-# The later defininition of _XOPEN_SOURCE and _POSIX_C_SOURCE disables -+ # u_int on Irix 5.3. Defining _BSD_TYPES brings it back. -+ AC_DEFINE(_BSD_TYPES, 1, [Define on Irix to enable u_int]) -+ -+@@ -426,9 +421,8 @@ -+ # but used in struct sockaddr.sa_family. Reported by Tim Rice. -+ SCO_SV/3.2) -+ define_xopen_source=no;; -+- # On FreeBSD 4, the math functions C89 does not cover are never defined -+- # with _XOPEN_SOURCE and __BSD_VISIBLE does not re-enable them. -+- FreeBSD/4.*) -++ # On FreeBSD, defining _XOPEN_SOURCE to 600 requests a strict environment. -++ FreeBSD/*) -+ define_xopen_source=no;; -+ # On MacOS X 10.2, a bug in ncurses.h means that it craps out if -+ # _XOPEN_EXTENDED_SOURCE is defined. Apparently, this is fixed in 10.3, which diff --git a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_setup.py b/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_setup.py deleted file mode 100644 index 4057b4072940..000000000000 --- a/math/sage/files/patch-build_pkgs_python_fbsd-patch-src_setup.py +++ /dev/null @@ -1,33 +0,0 @@ ---- /dev/null 2014-11-18 03:33:07.000000000 +0000 -+++ build/pkgs/python/fbsd-patch-src_setup.py 2014-11-18 03:37:12.000000000 +0000 -@@ -0,0 +1,30 @@ -+# Description: SEM option patch. If SEM is enabled, enable the build properly -+# Not upstreamed -+ -+--- src/setup.py.orig 2013-04-07 11:07:43.000000000 +0400 -++++ src/setup.py 2013-04-07 11:16:36.000000000 +0400 -+@@ -1551,10 +1551,22 @@ -+ macros = dict() -+ libraries = [] -+ -+- elif host_platform in ('freebsd4', 'freebsd5', 'freebsd6', 'freebsd7', 'freebsd8'): -++ elif host_platform in ('freebsd4', 'freebsd5', 'freebsd6'): -+ # FreeBSD's P1003.1b semaphore support is very experimental -+ # and has many known problems. (as of June 2008) -+- macros = dict() -++ macros = dict( # FreeBSD 4-6 -++ HAVE_SEM_OPEN=0, -++ HAVE_SEM_TIMEDWAIT=0, -++ HAVE_FD_TRANSFER=1, -++ ) -++ libraries = [] -++ -++ elif host_platform in ('freebsd7', 'freebsd8', 'freebsd9', 'freebsd10', 'freebsd11'): -++ macros = dict( # FreeBSD 7+ -++ HAVE_SEM_OPEN=1, -++ HAVE_SEM_TIMEDWAIT=1, -++ HAVE_FD_TRANSFER=1, -++ ) -+ libraries = [] -+ -+ elif host_platform.startswith('openbsd'): diff --git a/math/sage/files/patch-build_pkgs_scons_fbsd-patch-src_engine_SCons_compat__scons_subprocess.py b/math/sage/files/patch-build_pkgs_scons_fbsd-patch-src_engine_SCons_compat__scons_subprocess.py deleted file mode 100644 index b77076540080..000000000000 --- a/math/sage/files/patch-build_pkgs_scons_fbsd-patch-src_engine_SCons_compat__scons_subprocess.py +++ /dev/null @@ -1,34 +0,0 @@ ---- /dev/null 2014-02-05 05:15:00.000000000 +0000 -+++ build/pkgs/scons/fbsd-patch-src_engine_SCons_compat__scons_subprocess.py 2014-02-05 05:16:45.000000000 +0000 -@@ -0,0 +1,31 @@ -+--- src/engine/SCons/compat/_scons_subprocess.py.orig 2008-12-21 06:59:59.000000000 +0000 -++++ src/engine/SCons/compat/_scons_subprocess.py 2014-02-05 05:11:11.000000000 +0000 -+@@ -585,13 +585,19 @@ -+ class object: -+ pass -+ -++import thread -++lock = thread.allocate_lock() -++ -+ class Popen(object): -+ def __init__(self, args, bufsize=0, executable=None, -+ stdin=None, stdout=None, stderr=None, -+ preexec_fn=None, close_fds=False, shell=False, -+ cwd=None, env=None, universal_newlines=False, -+ startupinfo=None, creationflags=0): -+- """Create new Popen instance.""" -++ """Create new Popen instance. -++ Popen is not thread-safe and is therefore protected with a lock. -++ """ -++ lock.acquire() -+ _cleanup() -+ -+ self._child_created = False -+@@ -659,6 +665,7 @@ -+ self.stderr = os.fdopen(errread, 'rU', bufsize) -+ else: -+ self.stderr = os.fdopen(errread, 'rb', bufsize) -++ lock.release() -+ -+ -+ def _translate_newlines(self, data): diff --git a/math/sage/files/patch-build_pkgs_sympow_fbsd-patch-src_disk.c b/math/sage/files/patch-build_pkgs_sympow_fbsd-patch-src_disk.c deleted file mode 100644 index a59cb3e0c066..000000000000 --- a/math/sage/files/patch-build_pkgs_sympow_fbsd-patch-src_disk.c +++ /dev/null @@ -1,14 +0,0 @@ ---- /dev/null 2014-01-29 03:00:00.000000000 +0000 -+++ build/pkgs/sympow/fbsd-patch-src_disk.c 2014-01-29 03:01:19.000000000 +0000 -@@ -0,0 +1,11 @@ -+--- src/disk.c-orig 2012-04-19 02:33:51.000000000 +0000 -++++ src/disk.c 2012-04-19 02:34:22.000000000 +0000 -+@@ -39,7 +39,7 @@ -+ else if (((sp&3)==0) && CM_CASE) {if (2*ep==sp) S[3]='l'; else S[3]='h';} -+ else {if (2*ep==sp) S[3]='L'; else S[3]='H';} -+ if (HECKE && dv) {TACKS[which]=malloc(dv*sizeof(QD)); TACKON[which]=dv;} -+- else if (dv<=sp/2) TACKON[which]=0; -++ else if (dv<=sp/2) {TACKS[which]=NULL; TACKON[which]=0;} -+ else {TACKS[which]=malloc((dv-sp/2)*sizeof(QD)); TACKON[which]=dv-sp/2;} -+ S[4]=0; F=fopen("datafiles/param_data","r"); strcpy(U,S); -+ if (ANAL_RANK) {if (dv>0) U[0]='A'; else U[0]='m';} diff --git a/math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch b/math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch new file mode 100644 index 000000000000..8bd1bccd2f0d --- /dev/null +++ b/math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch @@ -0,0 +1,542 @@ +--- build/pkgs/tachyon/patches/Make-arch.patch.orig 2020-01-01 11:03:10 UTC ++++ build/pkgs/tachyon/patches/Make-arch.patch +@@ -10,7 +10,15 @@ + + # MPI path setup, probably shouldn't need to be changed. + MPIINC=$(MPIDIR)/include +-@@ -23,7 +24,8 @@ default: ++@@ -16,14 +17,15 @@ ++ MISCDEFS=$(USEJPEG) $(USEPNG) $(FLT) $(MBOX) ++ MISCINC=$(JPEGINC) $(PNGINC) $(SPACEBALLINC) ++ MISCFLAGS=$(MISCDEFS) $(MISCINC) ++-MISCLIB=$(JPEGLIB) $(PNGLIB) $(SPACEBALLLIB) +++MISCLIB=%%LDFLAGS%% $(JPEGLIB) $(PNGLIB) $(SPACEBALLLIB) ++ ++ default: ++ @echo " Choose one of the architectures specified below." + @echo "--------------------------------------------------------------" + @echo " Parallel Versions " + @echo "" +@@ -20,7 +28,7 @@ + @echo " aix-64-thr - IBM AIX 5.x POSIX Threads, 64-bit " + @echo " aix-mpi - IBM AIX 5.x (SP) MPI " + @echo " asci-red-mpi - Intel ASCI Red MPI " +-@@ -32,11 +34,12 @@ default: ++@@ -32,11 +34,12 @@ + @echo " cray-t3e-mpi - Cray T3E MPI " + @echo " cray-xt3-mpi - Cray XT3 MPI " + @echo " compaq-alphasc-mpi - Lemieux at PSC MPI " +@@ -34,7 +42,7 @@ + @echo " linux-alpha-ccc-qsw - Linux Alpha, Compaq C, MPI, QSWnet " + @echo " linux-lam - Linux MPI (OSC LAM) " + @echo " linux-lam-64 - Linux AMD64/EM64T, MPI, 64-bit " +-@@ -48,13 +51,14 @@ default: ++@@ -48,13 +51,14 @@ + @echo "linux-ia64-thr-sgicc - Linux IA-64, SGI Pro64 Compilers " + @echo " macosx-thr - MacOS X PowerPC, POSIX Threads " + @echo " macosx-x86-thr - MacOS X Intel x86, POSIX Threads " +@@ -56,7 +64,7 @@ + @echo "--------------------------------------------------------------" + @echo " Hybrid Parallel Versions " + @echo "" +-@@ -63,9 +67,11 @@ default: ++@@ -63,9 +67,11 @@ + @echo "--------------------------------------------------------------" + @echo " Sequential Versions " + @echo "" +@@ -70,7 +78,7 @@ + @echo " irix6 - SGI Irix 6.x " + @echo " linux - Linux " + @echo " linux-64 - Linux, AMD64/EM64T, GCC 3.x, 64-bit " +-@@ -102,7 +108,7 @@ default: ++@@ -102,7 +108,7 @@ + @echo "Consult the README file in this directory for further info. " + + ## +@@ -79,7 +87,7 @@ + ## No pthreads on ASCI Red yet. I didn't bother with the cop() stuff + ## + asci-red-mpi: +-@@ -118,7 +124,7 @@ asci-red-mpi: ++@@ -118,7 +124,7 @@ + + ## + ## IBM Blue Gene/L Parallel Supercomputer +@@ -88,7 +96,7 @@ + ## NOTE: strip breaks bluegene executables, they are dynamically re-linked + ## at runtime, so we must use /bin/true rather than strip + ## +-@@ -137,7 +143,7 @@ bluegene-mpi: ++@@ -137,7 +143,7 @@ + ## Cray Parallel Vector Processor Machines Using Threads + ## + ## Tested on J90s, but should work on almost any of the Cray PVP systems. +@@ -97,7 +105,7 @@ + ## off running on a fast workstation, or even better, on a T3E!!! + ## + cray-thr: +-@@ -228,7 +234,7 @@ cray-xt3-mpi: ++@@ -228,7 +234,7 @@ + ## + ## Architecture flags for the Intel Paragon XP/S Supercomputer using MPI + ## for message passing. NX is no longer supported by this software. +@@ -106,7 +114,7 @@ + ## Concurrent I/O is used by default. + ## + +-@@ -264,8 +270,8 @@ paragon-mpi: ++@@ -264,8 +270,8 @@ + + + ## +@@ -117,7 +125,7 @@ + ## Tested with the mpich distribution from Argonne National Labs + ## + +-@@ -277,7 +283,7 @@ ipsc860-mpi: ++@@ -277,7 +283,7 @@ + "AR = ar860" \ + "ARFLAGS = r" \ + "STRIP = strip860" \ +@@ -126,7 +134,7 @@ + + ipsc860-mpi-debug: + $(MAKE) all \ +-@@ -287,7 +293,7 @@ ipsc860-mpi-debug: ++@@ -287,7 +293,7 @@ + "AR = ar860" \ + "ARFLAGS = r" \ + "STRIP = touch " \ +@@ -135,7 +143,7 @@ + + + ## +-@@ -296,22 +302,18 @@ ipsc860-mpi-debug: ++@@ -296,22 +302,18 @@ + tru64-alpha: + $(MAKE) all \ + "ARCH = tru64-alpha" \ +@@ -159,7 +167,7 @@ + "ARFLAGS = r" \ + "STRIP = strip" \ + "LIBS = -L. -ltachyon $(MISCLIB) -lm" +-@@ -319,9 +321,7 @@ tru64-alpha-thr: ++@@ -319,9 +321,7 @@ + tru64-alpha-thr-ogl: + $(MAKE) all \ + "ARCH = tru64-alpha-thr-ogl" \ +@@ -169,7 +177,7 @@ + "ARFLAGS = r" \ + "STRIP = strip" \ + "LIBS = -L. -ltachyon $(TRU64_GLX_LIBS) $(MISCLIB) -lm" +-@@ -448,7 +448,7 @@ solaris-ultra-hpc: ++@@ -448,7 +448,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -178,7 +186,7 @@ + + solaris-mpi: + $(MAKE) all \ +-@@ -458,7 +458,7 @@ solaris-mpi: ++@@ -458,7 +458,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -187,25 +195,29 @@ + + solaris-thr: + $(MAKE) all \ +-@@ -473,9 +473,15 @@ solaris-thr: ++@@ -473,13 +473,19 @@ + solaris-pthreads-gcc: + $(MAKE) all \ + "ARCH = solaris-pthreads-gcc" \ + - "CC = gcc" \ + "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -D_REENTRANT -DSunOS $(MISCFLAGS) -DTHR -DUSEPOSIXTHREADS" \ + - "AR = ar" \ +-+ "ARFLAGS = r" \ +-+ "STRIP = strip" \ +-+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" +-+ ++ "ARFLAGS = r" \ ++ "STRIP = strip" \ ++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" ++ + +solaris-pthreads-gcc-64-bit: + + $(MAKE) all \ + + "ARCH = solaris-pthreads-gcc" \ + + "CFLAGS = -Wall -O4 -m64 -fomit-frame-pointer -ffast-math -D_REENTRANT -DSunOS $(MISCFLAGS) -DTHR -DUSEPOSIXTHREADS" \ +- "ARFLAGS = r" \ +- "STRIP = strip" \ +- "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" +-@@ -618,7 +624,7 @@ solaris-ultra-hpc-ogl: +++ "ARFLAGS = r" \ +++ "STRIP = strip" \ +++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" +++ ++ solaris-thr-x11: ++ $(MAKE) all \ ++ "ARCH = solaris-thr-x11" \ ++@@ -618,7 +624,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -214,7 +226,7 @@ + + solaris-ultra-pthreads-ogl: + $(MAKE) all \ +-@@ -643,9 +649,7 @@ solaris-apcc-ultra-thr: ++@@ -643,9 +649,7 @@ + solaris-gcc-thr: + $(MAKE) all \ + "ARCH = solaris-gcc-thr" \ +@@ -224,7 +236,7 @@ + "ARFLAGS = r" \ + "STRIP = touch" \ + "LIBS = -L. -ltachyon $(MISCLIB) -lm -lsocket -lthread" +-@@ -653,9 +657,7 @@ solaris-gcc-thr: ++@@ -653,9 +657,7 @@ + solaris-gcc-thr-x11: + $(MAKE) all \ + "ARCH = solaris-gcc-thr-x11" \ +@@ -234,7 +246,7 @@ + "ARFLAGS = r" \ + "STRIP = touch" \ + "LIBS = -L. -ltachyon $(MISCLIB) -lm -lsocket $(X11LIB) -lthread" +-@@ -701,7 +703,7 @@ irix5-mpi: ++@@ -701,7 +703,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -243,7 +255,7 @@ + + irix5: + $(MAKE) all \ +-@@ -710,7 +712,7 @@ irix5: ++@@ -710,7 +712,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -252,7 +264,7 @@ + + irix6: + $(MAKE) all \ +-@@ -719,7 +721,7 @@ irix6: ++@@ -719,7 +721,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -261,7 +273,7 @@ + + irix6-purify: + $(MAKE) all \ +-@@ -738,7 +740,7 @@ irix6-64-thr: ++@@ -738,7 +740,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -270,7 +282,7 @@ + + irix6-thr: + $(MAKE) all \ +-@@ -747,7 +749,7 @@ irix6-thr: ++@@ -747,7 +749,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -279,7 +291,7 @@ + + irix6-thr-purify: + $(MAKE) all \ +-@@ -766,7 +768,7 @@ irix6-thr-ogl: ++@@ -766,7 +768,7 @@ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ +@@ -288,7 +300,7 @@ + + + ## +-@@ -776,6 +778,8 @@ irix6-thr-ogl: ++@@ -776,6 +778,8 @@ + ## available yet, since access to a thread capable test machine is needed + ## for implementation. These configurations require xlc. + ## +@@ -297,7 +309,7 @@ + + + aix: +-@@ -788,6 +792,19 @@ aix: ++@@ -788,6 +792,19 @@ + "STRIP = strip" \ + "LIBS = -L. -ltachyon $(MISCLIB) -lm" + +@@ -317,7 +329,7 @@ + aix-mpi: + $(MAKE) all \ + "ARCH = aix-mpi" \ +-@@ -808,6 +825,19 @@ aix-thr: ++@@ -808,6 +825,19 @@ + "STRIP = strip" \ + "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" + +@@ -337,7 +349,7 @@ + aix-64-thr: + $(MAKE) all \ + "ARCH = aix-64-thr" \ +-@@ -836,6 +866,32 @@ hpux: ++@@ -836,6 +866,32 @@ + "STRIP = strip" \ + "LIBS = -L. -ltachyon $(MISCLIB) -lm" + +@@ -370,7 +382,7 @@ + hpux-thr: + $(MAKE) all \ + "ARCH = hpux-thr" \ +-@@ -867,67 +923,57 @@ hpux-ia64-thr: ++@@ -867,67 +923,57 @@ + next: + $(MAKE) all \ + "ARCH = next" \ +@@ -391,16 +403,16 @@ + "ARFLAGS = r" \ + "STRIP = strip" \ + - "RANLIB = ranlib" \ +-+ "LIBS = -L. -ltachyon $(MISCLIB)" +-+ ++ "LIBS = -L. -ltachyon $(MISCLIB)" ++ + +macosx-64: + + $(MAKE) all \ + + "ARCH = macosx" \ + + "CFLAGS = -Os -m64 -ffast-math -DBsd $(MISCFLAGS)" \ + + "ARFLAGS = r" \ + + "STRIP = strip" \ +- "LIBS = -L. -ltachyon $(MISCLIB)" +- +++ "LIBS = -L. -ltachyon $(MISCLIB)" +++ + macosx-thr: + $(MAKE) all \ + "ARCH = macosx-thr" \ +@@ -446,7 +458,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lpthread -L/usr/X11R6/lib -lGLU -lGL -lX11 -framework Carbon" + + +-@@ -938,12 +984,9 @@ macosx-x86-thr-ogl: ++@@ -938,12 +984,9 @@ + beos: + $(MAKE) all \ + "ARCH = beos" \ +@@ -459,13 +471,14 @@ + "LIBS = -L. -ltachyon $(MISCLIB)" + + ## +-@@ -954,23 +997,17 @@ beos: ++@@ -954,23 +997,17 @@ + bsd: + $(MAKE) all \ + "ARCH = bsd" \ + - "CC = gcc" \ +- "CFLAGS = -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ ++- "CFLAGS = -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ + - "AR = ar" \ +++ "CFLAGS = %%CFLAGS%% -DBsd $(MISCFLAGS)" \ + "ARFLAGS = r" \ + "STRIP = strip" \ + - "RANLIB = ranlib" \ +@@ -475,15 +488,16 @@ + $(MAKE) all \ + "ARCH = bsd-sparc" \ + - "CC = gcc" \ +- "CFLAGS = -mv8 -msupersparc -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ ++- "CFLAGS = -mv8 -msupersparc -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ + - "AR = ar" \ +++ "CFLAGS = -mv8 -msupersparc %%CFLAGS%% -DBsd $(MISCFLAGS)" \ + "ARFLAGS = r" \ + "STRIP = strip" \ + - "RANLIB = ranlib" \ + "LIBS = -L. -ltachyon $(MISCLIB) -lm" + + ## +-@@ -980,23 +1017,17 @@ bsd-sparc: ++@@ -980,23 +1017,17 @@ + win32: + $(MAKE) all \ + "ARCH = win32" \ +@@ -509,7 +523,7 @@ + "LIBS = -L. -L'/Program files/MPIPro/LIB' -ltachyon -lmpi $(MISCLIB) -lm" + + ## +-@@ -1007,60 +1038,45 @@ win32-mpi: ++@@ -1007,60 +1038,45 @@ + linux: + $(MAKE) all \ + "ARCH = linux" \ +@@ -570,7 +584,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lm" + + +-@@ -1068,12 +1084,9 @@ linux-64-debug: ++@@ -1068,12 +1084,9 @@ + linux-64-thr: + $(MAKE) all \ + "ARCH = linux-64-thr" \ +@@ -583,7 +597,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" + + +-@@ -1081,17 +1094,14 @@ linux-64-thr: ++@@ -1081,17 +1094,14 @@ + linux-p4: + $(MAKE) all \ + "ARCH = linux-p4" \ +@@ -603,7 +617,7 @@ + linux-p4-icc: + $(MAKE) all \ + "ARCH = linux-p4-icc" \ +-@@ -1119,23 +1129,17 @@ linux-p4-icc-thr: ++@@ -1119,23 +1129,17 @@ + linux-athlon: + $(MAKE) all \ + "ARCH = linux-athlon" \ +@@ -627,7 +641,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" + + +-@@ -1167,21 +1171,25 @@ linux-athlon-pgcc: ++@@ -1167,21 +1171,25 @@ + linux-thr: + $(MAKE) all \ + "ARCH = linux-thr" \ +@@ -637,8 +651,8 @@ + "ARFLAGS = r" \ + "STRIP = strip" \ + - "RANLIB = ranlib" \ +-+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" +-+ ++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" ++ + +# Linux Arm using gcc, with threads + +linux-arm-thr: + + $(MAKE) all \ +@@ -646,8 +660,8 @@ + + "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -DLinux -DTHR -D_REENTRANT $(MISCFLAGS)" \ + + "ARFLAGS = r" \ + + "STRIP = strip" \ +- "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" +- +++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" +++ + # Linux x86 using gcc, threads, and OpenGL + linux-thr-ogl: + $(MAKE) all \ +@@ -658,7 +672,7 @@ + "ARFLAGS = r" \ + "STRIP = touch" \ + "LIBS = -L. -ltachyon $(MISCLIB) $(LINUX_GLX_LIBS) $(MISCLIB) -lm -lpthread" +-@@ -1190,24 +1198,18 @@ linux-thr-ogl: ++@@ -1190,24 +1198,18 @@ + linux-beowulf-mpi-ogl: + $(MAKE) all \ + "ARCH = linux-beowulf-mpi" \ +@@ -683,7 +697,7 @@ + "LIBS = -L. -ltachyon -lmpi $(MISCLIB) -lm" + + # Linux x86 using LAM MPI +-@@ -1239,10 +1241,8 @@ linux-mpi: ++@@ -1239,10 +1241,8 @@ + "ARCH = linux-mpi" \ + "CC = mpicc" \ + "CFLAGS = -DLinux -DMPI $(MISCFLAGS)" \ +@@ -694,7 +708,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lm" + + linux-mpi-thr: +-@@ -1250,10 +1250,8 @@ linux-mpi-thr: ++@@ -1250,10 +1250,8 @@ + "ARCH = linux-mpi-thr" \ + "CC = mpicc" \ + "CFLAGS = -DLinux -DMPI -DTHR $(MISCFLAGS)" \ +@@ -705,7 +719,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" + + linux-mpi-64: +-@@ -1261,10 +1259,8 @@ linux-mpi-64: ++@@ -1261,10 +1259,8 @@ + "ARCH = linux-mpi-64" \ + "CC = mpicc" \ + "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -I$(LAMHOME)/h -DLinux -DMPI -DLP64 $(MISCFLAGS)" \ +@@ -716,7 +730,7 @@ + "LIBS = -L. -L$(LAMHOME)/lib -ltachyon $(MISCLIB) -lm" + + +-@@ -1297,48 +1293,36 @@ linux-lam-thr: ++@@ -1297,48 +1293,36 @@ + linux-ipaq: + $(MAKE) all \ + "ARCH = linux-ipaq" \ +@@ -768,7 +782,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lm" + + # Linux Alpha using Compaq's compilers +-@@ -1369,12 +1353,9 @@ linux-alpha-ccc-qsw: ++@@ -1369,12 +1353,9 @@ + linux-ia64: + $(MAKE) all \ + "ARCH = linux-ia64" \ +@@ -782,7 +796,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lm" + + # Linux IA-64 using SGI compilers (Merced, Itanium, McKinley, etc) +-@@ -1393,12 +1374,9 @@ linux-ia64-sgicc: ++@@ -1393,12 +1374,9 @@ + linux-ia64-thr: + $(MAKE) all \ + "ARCH = linux-ia64-thr" \ +@@ -796,7 +810,7 @@ + "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" + + # Linux IA-64 using SGI compilers and threads (Merced, Itanium, McKinley, etc) +-@@ -1421,9 +1399,7 @@ linux-ia64-thr-sgicc: ++@@ -1421,9 +1399,7 @@ + sgi-altix-mpi: + $(MAKE) all \ + "ARCH = sgi-altix-mpi" \ +@@ -806,7 +820,7 @@ + "ARFLAGS = r" \ + "STRIP = strip" \ + "LIBS = -ltachyon -lmpi $(MISCLIB) -lm " +-@@ -1432,7 +1408,7 @@ sgi-altix-mpi: ++@@ -1432,7 +1408,7 @@ + ## CSPI PowerPC Based Multicomputers Running VXWORKS + ## This configuration works for the machine at MPI Software Technologies + ## Uses MSTI MPI/Pro for message passing. +@@ -815,7 +829,7 @@ + cspi-ppc-mpi: + $(MAKE) all \ + "ARCH = cspi-ppc-mpi" \ +-@@ -1448,7 +1424,7 @@ cspi-ppc-mpi: ++@@ -1448,7 +1424,7 @@ + ## Mercury PowerPC Based Multicomputers Running MCOS + ## This configuration works for the machine at MPI Software Technologies + ## Uses MSTI MPI/Pro for message passing. +@@ -824,7 +838,7 @@ + mercury-ppc-mpi: + $(MAKE) all \ + "ARCH = mercury-ppc-mpi" \ +-@@ -1469,7 +1445,7 @@ mercury-ppc-mpi-rtvi: ++@@ -1469,7 +1445,7 @@ + "ARFLAGS = -r" \ + "STRIP = /bin/touch" \ + "LIBS = -L. -L/opt/MPIPro/lib ../compile/mercury-ppc-mpi-rtvi/libmgf.a ../compile/mercury-ppc-mpi-rtvi/libray.a $(RTVILIB) -lmpi.appc" +@@ -833,7 +847,7 @@ + @echo " Also, copy your machines file into your CWD." + + ## +-@@ -1490,7 +1466,7 @@ mercury-i860-rtvi: ++@@ -1490,7 +1466,7 @@ + ## Mercury i860 Based Multicomputers Running MCOS + ## This configuration works for the machine at MPI Software Technologies + ## Uses MSTI MPI/Pro for message passing. diff --git a/math/sage/files/patch-build_pkgs_zlib_spkg-install b/math/sage/files/patch-build_pkgs_zlib_spkg-install deleted file mode 100644 index 622b8c04ff11..000000000000 --- a/math/sage/files/patch-build_pkgs_zlib_spkg-install +++ /dev/null @@ -1,12 +0,0 @@ ---- build/pkgs/zlib/spkg-install-orig 2014-12-06 21:41:30.000000000 +0000 -+++ build/pkgs/zlib/spkg-install 2014-12-06 21:42:12.000000000 +0000 -@@ -1,5 +1,9 @@ - #!/usr/bin/env bash - -+# Use system zlibc because on FreeBSD the following doesn't build relocatable -+# libraries. -+exit 0 -+ - if [ -z "$SAGE_LOCAL" ]; then - echo >&2 "Error: SAGE_LOCAL undefined - exiting..." - echo >&2 "Maybe run 'sage -sh'?" diff --git a/math/sage/files/patch-configure.ac b/math/sage/files/patch-configure.ac new file mode 100644 index 000000000000..8890137ffeea --- /dev/null +++ b/math/sage/files/patch-configure.ac @@ -0,0 +1,22 @@ +--- configure.ac.orig 2020-04-12 17:52:58 UTC ++++ configure.ac +@@ -172,18 +172,9 @@ please join the sage-devel discussion list - see + http://groups.google.com/group/sage-devel + The Sage community would also appreciate any patches you submit]]);; + +-*-*-freebsd*) +-AC_MSG_ERROR([[ +-You are attempting to build Sage on the FreeBSD operating system, +-which is not a supported platform for Sage yet, though +-developers are working on adding FreeBSD support. Things may or +-may not work. If you would like to help port Sage to FreeBSD, +-please join the sage-devel discussion list - see +-http://groups.google.com/group/sage-devel +-The Sage community would also appreciate any patches you submit]]);; +- + # The following are all supported platforms. + *-*-linux*);; ++*-*-freebsd*);; + *-*-darwin*);; + *-*-solaris*);; + *-*-cygwin*);; diff --git a/math/sage/files/patch-src_bin_sage-spkg b/math/sage/files/patch-src_bin_sage-spkg deleted file mode 100644 index 1533ba10e11f..000000000000 --- a/math/sage/files/patch-src_bin_sage-spkg +++ /dev/null @@ -1,32 +0,0 @@ ---- src/bin/sage-spkg-orig 2014-01-29 17:26:07.000000000 +0000 -+++ src/bin/sage-spkg 2014-01-29 17:41:25.000000000 +0000 -@@ -593,6 +593,29 @@ - exit 1 - fi - -+if ls fbsd-patch-* > /dev/null 2>&1; then -+ echo "===> Applying FreeBSD patches" -+ cat fbsd-patch-* | patch -p0 || exit 1 -+ echo "===> Done applying FreeBSD patches" -+fi -+ -+# Inspired by run-autotools-fixup target in Mk/bsd.port.mk. -+# Work around an issue where FreeBSD 10.0 is detected as FreeBSD 1.x. -+for f in `find src -type f \( -name config.libpath -o \ -+ -name config.rpath -o -name configure -o -name libtool.m4 -o \ -+ -name ltconfig -o -name libtool -o -name aclocal.m4 -o \ -+ -name acinclude.m4 \)` ; do \ -+ sed -i.fbsd10bak \ -+ -e 's|freebsd1\*)|freebsd1.\*)|g' \ -+ -e 's|freebsd\[12\]\*)|freebsd[12].*)|g' \ -+ -e 's|freebsd\[123\]\*)|freebsd[123].*)|g' \ -+ -e 's|freebsd\[\[12\]\]\*)|freebsd[[12]].*)|g' \ -+ -e 's|freebsd\[\[123\]\]\*)|freebsd[[123]].*)|g' \ -+ ${f} -+ rm -f ${f}.fbsd10bak -+ echo "===> FreeBSD 10 autotools fix applied to ${f}"; \ -+done -+ - # When there is no spkg-install, assume the "spkg" is a tarball not - # specifically made for Sage. Since we want it to be as easy as - # possible to install such a package, we "guess" spkg-install. diff --git a/math/sage/files/patch-src_doc_common_builder.py b/math/sage/files/patch-src_doc_common_builder.py deleted file mode 100644 index a37f2165929f..000000000000 --- a/math/sage/files/patch-src_doc_common_builder.py +++ /dev/null @@ -1,68 +0,0 @@ ---- src/doc/common/builder.py.orig 2014-05-06 11:21:42.000000000 +0000 -+++ src/doc/common/builder.py 2014-05-15 21:18:06.000000000 +0000 -@@ -281,19 +281,22 @@ - - # build the other documents in parallel - from multiprocessing import Pool -- pool = Pool(NUM_THREADS, maxtasksperchild=1) -+ # pool = Pool(NUM_THREADS, maxtasksperchild=1) - L = [(doc, name, kwds) + args for doc in others] -- # map_async handles KeyboardInterrupt correctly. Plain map and -- # apply_async does not, so don't use it. -- x = pool.map_async(build_other_doc, L, 1) -- try: -- x.get(99999) -- pool.close() -- pool.join() -- except Exception: -- pool.terminate() -- if ABORT_ON_ERROR: -- raise -+ # Pool doesn't work properly in FreeBSD. Instead: -+ for iii in L: -+ build_other_doc(iii) -+ # # map_async handles KeyboardInterrupt correctly. Plain map and -+ # # apply_async does not, so don't use it. -+ # x = pool.map_async(build_other_doc, L, 1) -+ # try: -+ # x.get(99999) -+ # pool.close() -+ # pool.join() -+ # except Exception: -+ # pool.terminate() -+ # if ABORT_ON_ERROR: -+ # raise - logger.warning("Elapsed time: %.1f seconds."%(time.time()-start)) - logger.warning("Done building the documentation!") - -@@ -479,18 +482,20 @@ - continue - output_dir = self._output_dir(format, lang) - from multiprocessing import Pool -- pool = Pool(NUM_THREADS, maxtasksperchild=1) -+ # pool = Pool(NUM_THREADS, maxtasksperchild=1) - L = [(doc, lang, format, kwds) + args for doc in self.get_all_documents(refdir)] - # (See comment in AllBuilder._wrapper about using map instead of apply.) -- x = pool.map_async(build_ref_doc, L, 1) -- try: -- x.get(99999) -- pool.close() -- pool.join() -- except Exception: -- pool.terminate() -- if ABORT_ON_ERROR: -- raise -+ for iii in L: -+ build_ref_doc(iii) -+ # x = pool.map_async(build_ref_doc, L, 1) -+ # try: -+ # x.get(99999) -+ # pool.close() -+ # pool.join() -+ # except Exception: -+ # pool.terminate() -+ # if ABORT_ON_ERROR: -+ # raise - # The html refman must be build at the end to ensure correct - # merging of indexes and inventories. - # Sphinx is run here in the current process (not in a diff --git a/math/sage/files/patch-src_doc_common_custom-sphinx-build.py b/math/sage/files/patch-src_doc_common_custom-sphinx-build.py deleted file mode 100644 index 2287b364da53..000000000000 --- a/math/sage/files/patch-src_doc_common_custom-sphinx-build.py +++ /dev/null @@ -1,9 +0,0 @@ ---- src/doc/common/custom-sphinx-build.py-orig 2014-05-15 19:16:13.000000000 +0000 -+++ src/doc/common/custom-sphinx-build.py 2014-05-15 19:17:11.000000000 +0000 -@@ -207,4 +207,5 @@ - if ERROR_MESSAGE and ABORT_ON_ERROR: - sys.stdout.flush() - sys.stderr.flush() -- raise OSError(ERROR_MESSAGE) -+ # Comment out next line so that warnings don't stop doc build. -+ # raise OSError(ERROR_MESSAGE) diff --git a/math/sage/files/patch-src_sage_libs_ecl.pyx b/math/sage/files/patch-src_sage_libs_ecl.pyx new file mode 100644 index 000000000000..0add3bd7bb44 --- /dev/null +++ b/math/sage/files/patch-src_sage_libs_ecl.pyx @@ -0,0 +1,74 @@ +--- src/sage/libs/ecl.pyx.orig 2020-05-22 13:21:27 UTC ++++ src/sage/libs/ecl.pyx +@@ -15,7 +15,7 @@ Library interface to Embeddable Common Lisp (ECL) + #adapted to work with pure Python types. + + from libc.stdlib cimport abort +-from libc.signal cimport SIGINT, SIGBUS, SIGSEGV, SIGCHLD ++from libc.signal cimport SIGINT, SIGBUS, SIGSEGV, SIGCHLD, SIGFPE + from libc.signal cimport raise_ as signal_raise + from posix.signal cimport sigaction, sigaction_t + cimport cysignals.signals +@@ -47,9 +47,14 @@ cdef extern from "eclsig.h": + void ecl_sig_off() + cdef sigaction_t ecl_sigint_handler + cdef sigaction_t ecl_sigbus_handler ++ cdef sigaction_t ecl_sigfpe_handler + cdef sigaction_t ecl_sigsegv_handler + cdef mpz_t ecl_mpz_from_bignum(cl_object obj) + cdef cl_object ecl_bignum_from_mpz(mpz_t num) ++ cdef int fegetexcept() ++ cdef int feenableexcept(int) ++ cdef int fedisableexcept(int) ++ cdef int ecl_feflags + + cdef cl_object string_to_object(char * s): + return ecl_read_from_cstring(s) +@@ -238,6 +243,7 @@ def init_ecl(): + global ecl_has_booted + cdef char *argv[1] + cdef sigaction_t sage_action[32] ++ cdef int sage_fpes + cdef int i + + if ecl_has_booted: +@@ -257,6 +263,8 @@ def init_ecl(): + for i in range(1,32): + sigaction(i, NULL, &sage_action[i]) + ++ sage_fpes = fegetexcept() ++ + #initialize ECL + ecl_set_option(ECL_OPT_SIGNAL_HANDLING_THREAD, 0) + cl_boot(1, argv) +@@ -264,8 +272,12 @@ def init_ecl(): + #save signal handler from ECL + sigaction(SIGINT, NULL, &ecl_sigint_handler) + sigaction(SIGBUS, NULL, &ecl_sigbus_handler) ++ sigaction(SIGFPE, NULL, &ecl_sigfpe_handler) + sigaction(SIGSEGV, NULL, &ecl_sigsegv_handler) + ++ #save ECL's floating point exception flags ++ ecl_feflags = fegetexcept() ++ + #verify that no SIGCHLD handler was installed + cdef sigaction_t sig_test + sigaction(SIGCHLD, NULL, &sig_test) +@@ -276,6 +288,9 @@ def init_ecl(): + for i in range(1,32): + sigaction(i, &sage_action[i], NULL) + ++ fedisableexcept(ecl_feflags) ++ feenableexcept(sage_fpes) ++ + #initialise list of objects and bind to global variable + # *SAGE-LIST-OF-OBJECTS* to make it rooted in the reachable tree for the GC + list_of_objects=cl_cons(Cnil,cl_cons(Cnil,Cnil)) +@@ -319,7 +334,6 @@ def init_ecl(): + (values nil (princ-to-string cnd))))) + """)) + safe_funcall_clobj=cl_eval(string_to_object(b"(symbol-function 'sage-safe-funcall)")) +- + ecl_has_booted = 1 + + cdef cl_object ecl_safe_eval(cl_object form) except NULL: diff --git a/math/sage/files/patch-src_sage_libs_eclsig.h b/math/sage/files/patch-src_sage_libs_eclsig.h new file mode 100644 index 000000000000..228bd6369a88 --- /dev/null +++ b/math/sage/files/patch-src_sage_libs_eclsig.h @@ -0,0 +1,69 @@ +--- src/sage/libs/eclsig.h.orig 2020-05-22 13:21:27 UTC ++++ src/sage/libs/eclsig.h +@@ -9,24 +9,66 @@ + + + #include <signal.h> ++ ++/* Rummage around to determine how ECL was configured */ ++#define ECL_AVOID_FPE_H /* Prevent some local includes */ ++#include <ecl/config-internal.h> ++ ++#ifdef HAVE_FENV_H ++#include <fenv.h> ++#ifndef FE_ALL_EXCEPT ++#define FE_ALL_EXCEPT FE_DIVBYZERO | FE_OVERFLOW | FE_UNDERFLOW | FE_INVALID ++#endif ++#else ++#ifndef FE_ALL_EXCEPT ++#define FE_ALL_EXCEPT 0 ++#endif ++#define feclearexcept(flags) do {} while (0) ++#endif ++ ++#ifndef HAVE_FEENABLEEXCEPT ++/* These are GNU extensions */ ++#define fegetexcept() 0 ++#define feenablexcept(flags) do {} while (0) ++#define fdisableexcept(flags) do {} while (0) ++#endif ++ + static struct sigaction ecl_sigint_handler; + static struct sigaction ecl_sigbus_handler; ++static struct sigaction ecl_sigfpe_handler; + static struct sigaction ecl_sigsegv_handler; + static struct sigaction sage_sigint_handler; + static struct sigaction sage_sigbus_handler; ++static struct sigaction sage_sigfpe_handler; + static struct sigaction sage_sigsegv_handler; ++static int ecl_feflags; ++static int sage_feflags; + + static inline void set_ecl_signal_handler(void) + { + sigaction(SIGINT, &ecl_sigint_handler, &sage_sigint_handler); + sigaction(SIGBUS, &ecl_sigbus_handler, &sage_sigbus_handler); ++ sigaction(SIGFPE, &ecl_sigfpe_handler, &sage_sigfpe_handler); + sigaction(SIGSEGV, &ecl_sigsegv_handler, &sage_sigsegv_handler); ++ ++ /* first clear pending floating point exceptions, if any */ ++ feclearexcept(FE_ALL_EXCEPT); ++ ++ /* sage_feflags should be 0; we don't set them otherwise */ ++ sage_feflags = fedisableexcept(FE_ALL_EXCEPT); ++ feenableexcept(ecl_feflags); + } + + static inline void unset_ecl_signal_handler(void) + { ++ /* clear pending exceptions and restore previous exception mask */ ++ feclearexcept(FE_ALL_EXCEPT); ++ ecl_feflags = fedisableexcept(FE_ALL_EXCEPT); ++ feenableexcept(sage_feflags); ++ + sigaction(SIGINT, &sage_sigint_handler, NULL); + sigaction(SIGBUS, &sage_sigbus_handler, NULL); ++ sigaction(SIGFPE, &sage_sigfpe_handler, NULL); + sigaction(SIGSEGV, &sage_sigsegv_handler, NULL); + } + diff --git a/math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch b/math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch new file mode 100644 index 000000000000..9c9876ee1d25 --- /dev/null +++ b/math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch @@ -0,0 +1,86 @@ +--- a/psutil/arch/bsd/freebsd_socks.c.orig 2017-03-21 00:28:50.234080000 -0700 ++++ b/psutil/arch/bsd/freebsd_socks.c 2017-03-21 00:35:53.545508000 -0700 +@@ -112,10 +112,17 @@ + } + + ++#if __FreeBSD_version >= 1200026 ++static struct xtcpcb * ++psutil_search_tcplist(char *buf, struct kinfo_file *kif) { ++ struct xtcpcb *tp; ++ struct xinpcb *inp; ++#else + static struct tcpcb * + psutil_search_tcplist(char *buf, struct kinfo_file *kif) { + struct tcpcb *tp; + struct inpcb *inp; ++#endif + struct xinpgen *xig, *oxig; + struct xsocket *so; + +@@ -123,9 +130,15 @@ + for (xig = (struct xinpgen *)((char *)xig + xig->xig_len); + xig->xig_len > sizeof(struct xinpgen); + xig = (struct xinpgen *)((char *)xig + xig->xig_len)) { ++#if __FreeBSD_version >= 1200026 ++ tp = (struct xtcpcb *)xig; ++ inp = &tp->xt_inp; ++ so = &inp->xi_socket; ++#else + tp = &((struct xtcpcb *)xig)->xt_tp; + inp = &((struct xtcpcb *)xig)->xt_inp; + so = &((struct xtcpcb *)xig)->xt_socket; ++#endif + + if (so->so_type != kif->kf_sock_type || + so->xso_family != kif->kf_sock_domain || +@@ -208,7 +221,11 @@ + struct xinpgen *xig, *exig; + struct xinpcb *xip; + struct xtcpcb *xtp; ++#if __FreeBSD_version >= 1200026 ++ struct xinpcb *inp; ++#else + struct inpcb *inp; ++#endif + struct xsocket *so; + const char *varname = NULL; + size_t len, bufsize; +@@ -273,8 +290,13 @@ + goto error; + } + inp = &xtp->xt_inp; ++#if __FreeBSD_version >= 1200026 ++ so = &inp->xi_socket; ++ status = xtp->t_state; ++#else + so = &xtp->xt_socket; + status = xtp->xt_tp.t_state; ++#endif + break; + case IPPROTO_UDP: + xip = (struct xinpcb *)xig; +@@ -283,7 +305,11 @@ + "struct xinpcb size mismatch"); + goto error; + } ++#if __FreeBSD_version >= 1200026 ++ inp = xip; ++#else + inp = &xip->xi_inp; ++#endif + so = &xip->xi_socket; + status = PSUTIL_CONN_NONE; + break; +@@ -477,7 +503,11 @@ + struct kinfo_file *freep = NULL; + struct kinfo_file *kif; + char *tcplist = NULL; ++#if __FreeBSD_version >= 1200026 ++ struct xtcpcb *tcp; ++#else + struct tcpcb *tcp; ++#endif + + PyObject *py_retlist = PyList_New(0); + PyObject *py_tuple = NULL; diff --git a/math/sage/files/py_libs_spkg-configure.m4 b/math/sage/files/py_libs_spkg-configure.m4 new file mode 100644 index 000000000000..db82eafd4939 --- /dev/null +++ b/math/sage/files/py_libs_spkg-configure.m4 @@ -0,0 +1,11 @@ +SAGE_SPKG_CONFIGURE( + [py_libs], [dnl direct testing for import module + AC_MSG_CHECKING(Import module py_libs...) + python3 -c "import py_libs;" > /dev/null 2>&1 + if test $? -ne 0; then + AC_MSG_RESULT(KO) + sage_spkg_install_py_libs=yes + else + AC_MSG_RESULT(OK) + fi +]) diff --git a/math/sage/files/pynac_spkg-configure.m4 b/math/sage/files/pynac_spkg-configure.m4 new file mode 100644 index 000000000000..3a850398c504 --- /dev/null +++ b/math/sage/files/pynac_spkg-configure.m4 @@ -0,0 +1,6 @@ +SAGE_SPKG_CONFIGURE([pynac], [ + SAGE_SPKG_DEPCHECK([gmp ntl flint singular giac], [ + dnl checking with pkg-config + PKG_CHECK_MODULES([libpynac], [pynac = 0.7.26], [], [sage_spkg_install_pynac=yes]) + ]) +]) diff --git a/math/sage/files/rubiks_spkg-configure.m4 b/math/sage/files/rubiks_spkg-configure.m4 new file mode 100644 index 000000000000..0f8b0264b0e4 --- /dev/null +++ b/math/sage/files/rubiks_spkg-configure.m4 @@ -0,0 +1,11 @@ +SAGE_SPKG_CONFIGURE([rubiks], [ + AC_PATH_PROG([rubiks], [cu2]) + AC_PATH_PROG([rubiks], [cubex]) + AC_PATH_PROG([rubiks], [dikcube]) + AC_PATH_PROG([rubiks], [mcube]) + AC_PATH_PROG([rubiks], [optimal]) + AC_PATH_PROG([rubiks], [size222]) + AS_IF([test x$rubiks = x], [ + AC_MSG_NOTICE([rubiks not found. Installing rubiks]) + sage_spkg_install_rubiks=yes]) +]) diff --git a/math/sage/files/sage_brial_spkg-configure.m4.in b/math/sage/files/sage_brial_spkg-configure.m4.in new file mode 100644 index 000000000000..a757bdcc0cf2 --- /dev/null +++ b/math/sage/files/sage_brial_spkg-configure.m4.in @@ -0,0 +1,10 @@ +SAGE_SPKG_CONFIGURE( + [sage_brial], [dnl direct testing of file existence, import do not work without sage + AC_MSG_CHECKING(py-brial installation...) + if [[ -f %%PYTHON_SITELIBDIR%%/brial/cnf.py ]] ; then + AC_MSG_RESULT(OK) + else + AC_MSG_RESULT(KO) + sage_spkg_install_sage_brial=yes + fi +]) diff --git a/math/sage/files/singular_spkg-configure.m4 b/math/sage/files/singular_spkg-configure.m4 new file mode 100644 index 000000000000..30a222414cdc --- /dev/null +++ b/math/sage/files/singular_spkg-configure.m4 @@ -0,0 +1,6 @@ +SAGE_SPKG_CONFIGURE([singular], [ + SAGE_SPKG_DEPCHECK([gmp mpfr], [ + dnl checking with pkg-config + PKG_CHECK_MODULES([libSingular], [Singular >= 4.1.1], [], [sage_spkg_install_singular=yes]) + ]) +]) diff --git a/math/sage/files/suitesparse_spkg-configure.m4 b/math/sage/files/suitesparse_spkg-configure.m4 new file mode 100644 index 000000000000..9ab66375bfc9 --- /dev/null +++ b/math/sage/files/suitesparse_spkg-configure.m4 @@ -0,0 +1,16 @@ +SAGE_SPKG_CONFIGURE([suitesparse], [ + SAGE_SPKG_DEPCHECK([openblas], [ + AC_CHECK_HEADER([suitesparse/SuiteSparse_config.h], [ + AC_SEARCH_LIBS([cholmod_speye], [cholmod],[], + [sage_spkg_install_suitesparse=yes]) + ], [ + sage_spkg_install_suitesparse=yes + ]) + ]) +], [], [], [ + AS_IF([test x$sage_spkg_install_suitesparse = xyes], [ + AC_SUBST(SAGE_SUITESPARSE_PREFIX, ['$SAGE_LOCAL']) + ], [ + AC_SUBST(SAGE_SUITESPARSE_PREFIX, ['']) + ]) +]) diff --git a/math/sage/files/sympow_spkg-configure.m4 b/math/sage/files/sympow_spkg-configure.m4 new file mode 100644 index 000000000000..36a35fda8667 --- /dev/null +++ b/math/sage/files/sympow_spkg-configure.m4 @@ -0,0 +1,4 @@ +SAGE_SPKG_CONFIGURE([sympow], [ + AC_PATH_PROG([SYMPOW], [sympow]) + AS_IF([test -z "$ac_cv_path_SYMPOW"], [sage_spkg_install_sympow=yes]) +]) diff --git a/math/sage/files/threejs_spkg-configure.m4.in b/math/sage/files/threejs_spkg-configure.m4.in new file mode 100644 index 000000000000..d068477ff88d --- /dev/null +++ b/math/sage/files/threejs_spkg-configure.m4.in @@ -0,0 +1,10 @@ +SAGE_SPKG_CONFIGURE( + [threejs], [dnl direct testing of file existence + AC_MSG_CHECKING(ThreeJS installation...) + if [[ -f %%LOCALBASE%%/www/threejs/Three.js ]] ; then + AC_MSG_RESULT(OK) + else + AC_MSG_RESULT(KO) + sage_spkg_install_threejs=yes + fi +]) diff --git a/math/sage/files/zn_poly_spkg-configure.m4 b/math/sage/files/zn_poly_spkg-configure.m4 new file mode 100644 index 000000000000..88bfd21c8d1d --- /dev/null +++ b/math/sage/files/zn_poly_spkg-configure.m4 @@ -0,0 +1,8 @@ +SAGE_SPKG_CONFIGURE([zn_poly], [ + SAGE_SPKG_DEPCHECK([gmp], [ + AC_CHECK_HEADER([zn_poly/zn_poly.h], [ + AC_SEARCH_LIBS([zn_mod_init], [zn_poly-0.9], [ + ], [sage_spkg_install_zn_poly=yes]) + ], [sage_spkg_install_zn_poly=yes]) + ]) +]) diff --git a/math/sage/pkg-plist b/math/sage/pkg-plist new file mode 100644 index 000000000000..dc25ccf4406f --- /dev/null +++ b/math/sage/pkg-plist @@ -0,0 +1,8608 @@ +bin/jupyter-bundlerextension +bin/jupyter-nbextension +bin/jupyter-notebook +bin/jupyter-serverextension +bin/math-readline +bin/python +bin/python3 +bin/sage +bin/sage-cachegrind +bin/sage-callgrind +bin/sage-cleaner +bin/sage-clone-source +bin/sage-config +bin/sage-coverage +bin/sage-coverageall +bin/sage-cython +bin/sage-download-upstream +bin/sage-env +bin/sage-env-config +bin/sage-eval +bin/sage-fix-pkg-checksums +bin/sage-fixdoctests +bin/sage-gdb-commands +bin/sage-grep +bin/sage-grepdoc +bin/sage-inline-fortran +bin/sage-ipynb2rst +bin/sage-ipython +bin/sage-list-experimental +bin/sage-list-optional +bin/sage-list-packages +bin/sage-list-standard +bin/sage-location +bin/sage-massif +bin/sage-maxima.lisp +bin/sage-native-execute 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