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# Created by: h2
# $FreeBSD$
PORTNAME= seqan
PORTVERSION= 1.3.1
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= http://ftp.seqan.de/releases/
MAINTAINER= h2+fbsdports@fsfe.org
COMMENT= C++ Sequence Analysis Library
LICENSE= BSD GPLv3
LICENSE_COMB= multi
LICENSE_FILE_BSD=${WRKSRC}/seqan/LICENSE
LICENSE_FILE_GPLv3=${WRKSRC}/apps/LICENSE
USES= cmake:outsource zip
CMAKE_SOURCE_PATH=${WRKSRC}/cmake
USE_PYTHON_BUILD=yes
MAKE_JOB_SAFE= yes
SUB_FILES= pkg-message
PKG_MESSAGE= ${WRKDIR}/pkg-message
NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == i386
# triggers internal error in system gcc
USE_GCC= yes
.endif
# unsafe workaround because FreeBSD lacks logl and expl
# see "BUGS" in `man 3 math`
post-patch:
@${REINPLACE_CMD} -e 's|expl|exp|g' ${WRKSRC}/apps/snp_store/snp_store.h
@${REINPLACE_CMD} -e 's|logl|log|g' ${WRKSRC}/apps/snp_store/snp_store.h
post-install:
@${CAT} ${PKG_MESSAGE}
.include <bsd.port.post.mk>
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