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share/java/classes/xml.jar
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share/java/biojava-1.01/README
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share/java/biojava-1.01/demos/acedb/AceClient.java
share/java/biojava-1.01/demos/acedb/SequenceFetch.java
share/java/biojava-1.01/demos/gff/GFFFilter.java
share/java/biojava-1.01/demos/gff/EmblToGffFasta.java
share/java/biojava-1.01/demos/gff/GFFToFeatures.java
share/java/biojava-1.01/demos/gff/varC4-2.gff
share/java/biojava-1.01/demos/gff/AL121903.embl
share/java/biojava-1.01/demos/seq/db/AddFilesToIndex.java
share/java/biojava-1.01/demos/seq/db/CreateIndex.java
share/java/biojava-1.01/demos/seq/db/FetchSequence.java
share/java/biojava-1.01/demos/seq/db/ListSeqsInIndex.java
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share/java/biojava-1.01/demos/seq/AL121903.genbank
share/java/biojava-1.01/demos/seq/TestTranslation.java
share/java/biojava-1.01/demos/seq/TestEmbl.java
share/java/biojava-1.01/demos/seq/AL121903.embl
share/java/biojava-1.01/demos/dist/TestDistribution.java
share/java/biojava-1.01/demos/dp/PairwiseAlignment.java
share/java/biojava-1.01/demos/dp/fake.fasta
share/java/biojava-1.01/demos/dp/ViterbiAlign.java
share/java/biojava-1.01/demos/dp/package.html
share/java/biojava-1.01/demos/dp/SearchProfile.java
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share/java/biojava-1.01/demos/files/fake.fasta
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share/java/biojava-1.01/demos/symbol/TestSimpleAlignment.java
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%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/UnknownImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/TrainRegression.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.DepthScaler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/ClassifierExample.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/ClassifierExample.PointClassifier.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/Classify.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.MultipleScalar.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.NullModelScaler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.SelectionScalar.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.UniformScaler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SVM_Light.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SVM_Light.LabelledVector.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/Train.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/ItemValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMClassifierModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMTarget.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingContext.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingListener.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/AbstractSVMClassifierModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/AbstractSVMTarget.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/CachingKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/DiagonalAddKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/DiagonalCachingKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/LinearKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/ListSumKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SMOTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/NestedKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/NormalizingKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/PolynomialKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/RadialBaseKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SigmoidKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleItemValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleSVMClassifierModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleSVMTarget.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SMORegressionTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SparseVector.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SparseVector.NormalizingKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMRegressionModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingEvent.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/Contract.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/AssertionFailedException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/PostconditionNotMetException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/PreconditionNotMetException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLPeerFactory.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLDispatcher.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLPeerBuilder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/ObjectUtil.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/StaticMemberPlaceHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/TypedProperties.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/ParserException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/deprecated-list.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/allclasses-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/index.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/packages.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/serialized-form.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/package-list
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/help-doc.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/stylesheet.css
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/index-all.html
@dirrm share/java/biojava-1.01/demos/acedb
@dirrm share/java/biojava-1.01/demos/gff
@dirrm share/java/biojava-1.01/demos/seq/db
@dirrm share/java/biojava-1.01/demos/seq
@dirrm share/java/biojava-1.01/demos/dist
@dirrm share/java/biojava-1.01/demos/dp
@dirrm share/java/biojava-1.01/demos/BioCorba
@dirrm share/java/biojava-1.01/demos/files
@dirrm share/java/biojava-1.01/demos/symbol
@dirrm share/java/biojava-1.01/demos/seqviewer
@dirrm share/java/biojava-1.01/demos
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/GNOME
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/socket
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/staticobj
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/seq
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/Biocorba
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/program
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/dp
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/gui
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/dist
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/search
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/symbol
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats/svm
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils/contract
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils/xml
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01
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