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# Created by: FreeBSD Bio porters (bio@freebsd.net)
# $FreeBSD$
PORTNAME= biojava
DISTVERSION= 1.7
PORTEPOCH= 1
CATEGORIES= biology java
MASTER_SITES= http://www.biojava.org/download/bj17/all/
DISTNAME= ${PORTNAME}-${DISTVERSION}-all
EXTRACT_SUFX= .jar
MAINTAINER= wenheping@gmail.com
COMMENT= Open-source Java tools for processing biological data
EXTRACT_DEPENDS+= jar:${PORTSDIR}/java/diablo-jdk16
USE_JAVA= yes
JAVA_VERSION= 1.6+
USE_ANT= yes
MAKE_ENV= CLASSPATH="${JAVALIBDIR}"
ALL_TARGET= package-biojava
JARFILES= biojava.jar bytecode.jar
PORTDOCS= biojava
PORTEXAMPLES= demos
EXTRACT_CMD= jar -xvf ${_DISTDIR}/${DISTFILES}
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}
do-extract:
@${RM} -rf ${WRKDIR}
@${MKDIR} ${WRKDIR}
@cd ${WRKDIR} && ${EXTRACT_CMD}
.if !defined(WITHOUT_TESTS)
regression-test:
@(cd ${BUILD_WRKSRC}; \
${SETENV} ${MAKE_ENV} ${ANT} ${MAKE_ARGS} runtests)
.endif
do-install:
@${ECHO_MSG} -n ">> Installing JAR files in ${JAVAJARDIR}..."
@${MKDIR} ${JAVAJARDIR}
.for JARFILE in ${JARFILES}
@cd ${WRKSRC}/ant-build && ${INSTALL_DATA} ${JARFILE} ${JAVAJARDIR}/${JARFILE}
@${ECHO_MSG} -n " ${JARFILE}"
.endfor
@${ECHO_MSG} " [ DONE ]"
.if !defined(NOPORTDOCS)
@${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..."
@${MKDIR} ${DOCSDIR}
@${INSTALL_DATA} ${WRKSRC}/LICENSE ${DOCSDIR}
@${INSTALL_DATA} ${WRKSRC}/README ${DOCSDIR}
@cd ${WRKSRC}/doc && \
${FIND} ${PORTDOCS} -type d -exec ${MKDIR} "${DOCSDIR}/{}" \; && \
${FIND} ${PORTDOCS} -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \;
@${ECHO_MSG} " [ DONE ]"
.endif
.if !defined(NOPORTEXAMPLES)
@${ECHO_MSG} -n ">> Installing examples in ${EXAMPLESDIR}..."
@${MKDIR} ${EXAMPLESDIR}
cd ${WRKSRC}/doc && \
${FIND} ${PORTEXAMPLES} -type d -exec ${MKDIR} "${EXAMPLESDIR}/{}" \; && \
${FIND} ${PORTEXAMPLES} -not -type d -exec ${INSTALL_DATA} "{}" "${EXAMPLESDIR}/{}" \;
@${ECHO_MSG} " [ DONE ]"
.endif
post-install:
.if !defined(BATCH)
@${ECHO_MSG} ""
@${ECHO_MSG} "Libraries installed at: ${JAVAJARDIR}"
@${ECHO_MSG} "You should edit your CLASSPATH to include the jar files"
@${ECHO_MSG} "in this directory."
@${ECHO_MSG} ""
@${ECHO_MSG} "Docs and demos are installed in:"
@${ECHO_MSG} "${DOCSDIR}"
@${ECHO_MSG} ""
.endif
.include <bsd.port.mk>
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