bin/cattrees.py bin/long_branch_symmdiff.py bin/strict_consensus_merge.py bin/sumlabels.py bin/sumtrees.py %%PYTHON_SITELIBDIR%%/dendropy/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/__init__.pyc %%PYTHON_SITELIBDIR%%/dendropy/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/coalescent.py %%PYTHON_SITELIBDIR%%/dendropy/coalescent.pyc %%PYTHON_SITELIBDIR%%/dendropy/coalescent.pyo %%PYTHON_SITELIBDIR%%/dendropy/continuous.py %%PYTHON_SITELIBDIR%%/dendropy/continuous.pyc %%PYTHON_SITELIBDIR%%/dendropy/continuous.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/beast.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/beast.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/beast.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/dataschema.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/dataschema.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/dataschema.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/fasta.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/fasta.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/fasta.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/ioclient.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/ioclient.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/ioclient.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexml.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexml.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexml.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_ncl.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_ncl.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_ncl.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_py.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_py.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_py.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustokenizer.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustokenizer.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustokenizer.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustreeiter.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustreeiter.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustreeiter.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/phylip.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/phylip.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/phylip.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlparser.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlparser.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlparser.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataobject/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/dataobject/__init__.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataobject/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataobject/base.py %%PYTHON_SITELIBDIR%%/dendropy/dataobject/base.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataobject/base.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataobject/char.py %%PYTHON_SITELIBDIR%%/dendropy/dataobject/char.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataobject/char.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataobject/dataset.py %%PYTHON_SITELIBDIR%%/dendropy/dataobject/dataset.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataobject/dataset.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataobject/taxon.py %%PYTHON_SITELIBDIR%%/dendropy/dataobject/taxon.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataobject/taxon.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataobject/tree.py %%PYTHON_SITELIBDIR%%/dendropy/dataobject/tree.pyc %%PYTHON_SITELIBDIR%%/dendropy/dataobject/tree.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/ape.py %%PYTHON_SITELIBDIR%%/dendropy/interop/ape.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/ape.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.py %%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.py %%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/ete.py %%PYTHON_SITELIBDIR%%/dendropy/interop/ete.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/ete.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.py %%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.py %%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.py %%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/ncbi.py %%PYTHON_SITELIBDIR%%/dendropy/interop/ncbi.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/ncbi.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/paup.py %%PYTHON_SITELIBDIR%%/dendropy/interop/paup.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/paup.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.py %%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.py %%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.pyc %%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.pyc %%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/distance.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/distance.pyc %%PYTHON_SITELIBDIR%%/dendropy/mathlib/distance.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/linearalg.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/linearalg.pyc %%PYTHON_SITELIBDIR%%/dendropy/mathlib/linearalg.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.pyc %%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.pyc %%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.pyo %%PYTHON_SITELIBDIR%%/dendropy/popgensim.py %%PYTHON_SITELIBDIR%%/dendropy/popgensim.pyc %%PYTHON_SITELIBDIR%%/dendropy/popgensim.pyo %%PYTHON_SITELIBDIR%%/dendropy/popgenstat.py %%PYTHON_SITELIBDIR%%/dendropy/popgenstat.pyc %%PYTHON_SITELIBDIR%%/dendropy/popgenstat.pyo %%PYTHON_SITELIBDIR%%/dendropy/reconcile.py %%PYTHON_SITELIBDIR%%/dendropy/reconcile.pyc %%PYTHON_SITELIBDIR%%/dendropy/reconcile.pyo %%PYTHON_SITELIBDIR%%/dendropy/scm.py %%PYTHON_SITELIBDIR%%/dendropy/scm.pyc %%PYTHON_SITELIBDIR%%/dendropy/scm.pyo %%PYTHON_SITELIBDIR%%/dendropy/seqmodel.py %%PYTHON_SITELIBDIR%%/dendropy/seqmodel.pyc %%PYTHON_SITELIBDIR%%/dendropy/seqmodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/seqsim.py %%PYTHON_SITELIBDIR%%/dendropy/seqsim.pyc %%PYTHON_SITELIBDIR%%/dendropy/seqsim.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/test/__init__.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/COII_Apes.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/angiosperms.chars.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/angiosperms.chars.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/apternodus.chars.hacked-for-tests.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/apternodus.chars.interleaved.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/apternodus.chars.nexml %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/apternodus.chars.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/avian-ovomucoids.chars.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/avian-ovomucoids.chars.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/bad_names.fasta %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/caenophidia_mos.chars.fasta %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/caenophidia_mos.chars.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/caenophidia_mos.chars.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/codons.nexml %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/crotaphytus_bicinctores.cytb.aligned.nexml %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/crotaphytus_bicinctores.nd2.aligned.nexml %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/interleaved-charsets-all.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/interleaved-charsets-c1.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/interleaved-charsets-c2.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/interleaved-charsets-c3.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/orti.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.csv %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.interleaved.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.simple.interleaved.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.simple.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-1stpos.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-2ndpos.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-3rdpos.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-all.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-coding.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-noncoding.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.beast.calibrated.xml %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.beast.uncalibrated.xml %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.fasta %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.interleaved.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.phylip %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae_continuous.chars.nexml %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae_continuous.chars.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae_continuous.chars.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/mixed/geospiza.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/mixed/multitaxa_mesquite.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/mixed/reference_single_taxonset_dataset.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/apternodus.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/bird_orders.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/deepcoal1.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/feb032009.splits.csv %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/feb032009.trees.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.dendropy-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.paup-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.pre-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.pruned_taxa.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.retained_taxa.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.dendropy-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.paup-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.pre-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.pruned_taxa.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.retained_taxa.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/maj-rule-bug1.trees.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/maj-rule-bug2.trees.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.beast.mcct.meanh.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.beast.mcct.medianh.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.beast.mcct.noedgelens.tree %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.beast.mcmc.trees %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.trees.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.dendropy-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.paup-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.pre-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.pruned_taxa.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.retained_taxa.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.dendropy-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.paup-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.pre-pruned.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.pruned_taxa.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.retained_taxa.txt %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.annotated.bad.nexml %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.annotated.nexml %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.beast.mcmc.trees %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.beast.summary.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.con %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.run1.t %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.run2.t %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.run3.t %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.run4.t %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mlboots.newick.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mlboots.nexus.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mle.newick %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mle.nex %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.random.bd0301.midpoint-rooted.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.random.bd0301.randomly-rooted.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.random.bd0301.tre %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.reference-trees.newick %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.reference-trees.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-block.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-no-translate-block.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/rana.trees.nexus %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/treebase_s373.xml %%PYTHON_SITELIBDIR%%/dendropy/test/support/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/__init__.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/coverage_analysis.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/coverage_analysis.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/coverage_analysis.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/datagen.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/datagen.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/datagen.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/datatest.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/datatest.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/datatest.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/extendedtest.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/extendedtest.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/extendedtest.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_pruned_trees.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_pruned_trees.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_pruned_trees.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_reference_tree.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_reference_tree.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_reference_tree.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/nexmlvalidator.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/nexmlvalidator.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/nexmlvalidator.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/pathmap.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/pathmap.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/pathmap.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/runlevel.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/runlevel.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/runlevel.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/support/tree_parse_speed.py %%PYTHON_SITELIBDIR%%/dendropy/test/support/tree_parse_speed.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/support/tree_parse_speed.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_annotations.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_annotations.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_annotations.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_ape.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_ape.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_ape.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_asciitree.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_asciitree.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_asciitree.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_biopython.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_biopython.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_biopython.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_coalescent.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_coalescent.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_coalescent.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_containers.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_containers.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_containers.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_continuous.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_continuous.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_continuous.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_datagen.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_datagen.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_datagen.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_beast.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_beast.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_beast.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_fasta.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_fasta.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_fasta.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_indexing.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_indexing.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_indexing.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_newick.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_newick.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_newick.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexml.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexml.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexml.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexus.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexus.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexus.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexustokenizer.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexustokenizer.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexustokenizer.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_phylip.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_phylip.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_phylip.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_tree_rooting.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_tree_rooting.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_tree_rooting.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_char_array.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_char_array.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_char_array.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_cloning.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_cloning.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_cloning.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_dataset.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_dataset.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_dataset.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_taxon.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_taxon.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_taxon.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree_list.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree_list.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree_list.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_distance.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_distance.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_distance.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_ete.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_ete.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_ete.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_fitch.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_fitch.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_fitch.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_linearalg.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_linearalg.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_linearalg.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_nexmlvalidator.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_nexmlvalidator.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_nexmlvalidator.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_paup.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_paup.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_paup.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_popgensim.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_popgensim.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_popgensim.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_popgenstat.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_popgenstat.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_popgenstat.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_reconcile.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_reconcile.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_reconcile.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_scm.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_scm.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_scm.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_seqsim.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_seqsim.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_seqsim.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_split_counting.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_split_counting.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_split_counting.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_split_masking.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_split_masking.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_split_masking.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_splits_on_incomplete_leaf_sets.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_splits_on_incomplete_leaf_sets.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_splits_on_incomplete_leaf_sets.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_statistics.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_statistics.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_statistics.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_sumtrees.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_sumtrees.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_sumtrees.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_calcs.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_calcs.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_calcs.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_from_splits.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_from_splits.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_from_splits.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_manips.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_manips.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_manips.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_metrics.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_metrics.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_metrics.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sims.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sims.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sims.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_structuring.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_structuring.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_structuring.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sums.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sums.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sums.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_taxa.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_taxa.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_taxa.pyo %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_traversal.py %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_traversal.pyc %%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_traversal.pyo %%PYTHON_SITELIBDIR%%/dendropy/treecalc.py %%PYTHON_SITELIBDIR%%/dendropy/treecalc.pyc %%PYTHON_SITELIBDIR%%/dendropy/treecalc.pyo %%PYTHON_SITELIBDIR%%/dendropy/treemanip.py %%PYTHON_SITELIBDIR%%/dendropy/treemanip.pyc %%PYTHON_SITELIBDIR%%/dendropy/treemanip.pyo %%PYTHON_SITELIBDIR%%/dendropy/treesim.py %%PYTHON_SITELIBDIR%%/dendropy/treesim.pyc %%PYTHON_SITELIBDIR%%/dendropy/treesim.pyo %%PYTHON_SITELIBDIR%%/dendropy/treesplit.py %%PYTHON_SITELIBDIR%%/dendropy/treesplit.pyc %%PYTHON_SITELIBDIR%%/dendropy/treesplit.pyo %%PYTHON_SITELIBDIR%%/dendropy/treesum.py %%PYTHON_SITELIBDIR%%/dendropy/treesum.pyc %%PYTHON_SITELIBDIR%%/dendropy/treesum.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/ElementTree.py %%PYTHON_SITELIBDIR%%/dendropy/utility/ElementTree.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/ElementTree.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.py %%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/cli.py %%PYTHON_SITELIBDIR%%/dendropy/utility/cli.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/cli.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/containers.py %%PYTHON_SITELIBDIR%%/dendropy/utility/containers.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/containers.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/debugging.py %%PYTHON_SITELIBDIR%%/dendropy/utility/debugging.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/debugging.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/error.py %%PYTHON_SITELIBDIR%%/dendropy/utility/error.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/error.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/fileutils.py %%PYTHON_SITELIBDIR%%/dendropy/utility/fileutils.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/fileutils.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/iosys.py %%PYTHON_SITELIBDIR%%/dendropy/utility/iosys.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/iosys.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.py %%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/session.py %%PYTHON_SITELIBDIR%%/dendropy/utility/session.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/session.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/termutils.py %%PYTHON_SITELIBDIR%%/dendropy/utility/termutils.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/termutils.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/textutils.py %%PYTHON_SITELIBDIR%%/dendropy/utility/textutils.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/textutils.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.py %%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyc %%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyo