PORTNAME=	mcmc-jags
DISTVERSION=	4.3.1
PORTREVISION=	1
CATEGORIES=	math
MASTER_SITES=	SF/mcmc-jags/JAGS/${S}.x/Source/:1 \
		SF/mcmc-jags/Examples/${S}.x/:2 \
		SF/mcmc-jags/Manuals/2.x/:3 \
		SF/mcmc-jags/Manuals/${S}.x/:4
DISTFILES=	JAGS-${PORTVERSION}${EXTRACT_SUFX}:1
DIST_SUBDIR=	${PORTNAME}
EXTRACT_ONLY=	${DISTFILES:M*[12]:C|:.*||}

MAINTAINER=	ports@FreeBSD.org
COMMENT=	Just Another Gibbs Sampler
WWW=		http://mcmc-jags.sourceforge.net/

LICENSE=	GPLv2
LICENSE_FILE=	${WRKSRC}/COPYING

LIB_DEPENDS=	libltdl.so:devel/libltdl

GNU_CONFIGURE=	yes
USES=		bison compiler:features fortran gmake libtool localbase pathfix
USE_GCC=	yes
USE_LDCONFIG=	yes
INSTALL_TARGET=	install-strip

WRKSRC=		${WRKDIR}/JAGS-${PORTVERSION}

OPTIONS_SINGLE=	BLAS
OPTIONS_SINGLE_BLAS=	ATLAS OPENBLAS NETLIB

OPTIONS_DEFAULT+=	OPENBLAS

ATLAS_USES=	blaslapack:atlas
ATLAS_VARS=	MANUAL_PACKAGE_BUILD=\
"Choose a BLAS option other than ATLAS for package building."
NETLIB_USES=	blaslapack:netlib
OPENBLAS_USES=	blaslapack:openblas
DOCS_DISTFILES=	jags_developer_manual.pdf:3 jags_installation_manual.pdf:4 \
		jags_user_manual.pdf:4
DOCS_PORTDOCS=	${DISTFILES:M*[34]:C|:.*||}
EXAMPLES_DISTFILES=	classic-bugs.tar.gz:2
EXAMPLES_PORTEXAMPLES=	*

CONFIGURE_ARGS+=	--with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \
		 --with-lapack="${LAPACKLIB}"

OPTIONS_SUB=	YES
PLIST_SUB=	MODULEVERSION=${S}
S=		${PORTVERSION:C|\..*||}

OPTIONS_DEFINE=	DOCS EXAMPLES

post-patch:
	@${REINPLACE_CMD} \
		-e '/@WINDOWS_FALSE@bin_SCRIPTS =/s/jags/mcmc-&/' \
		-e '/CLEANFILES =/s/jags/mcmc-&/' \
		-e '/@WINDOWS_FALSE@jags:/s/jags/mcmc-&/' \
		-e '/@WINDOWS_FALSE@.*rm -f jags/s/jags/mcmc-&/' \
		-e '/@WINDOWS_FALSE@.*mv jags.tmp jags/s/jags/mcmc-&/2' \
		${WRKSRC}/src/terminal/Makefile.in

post-patch-EXAMPLES-on:
	@${SED} -i '' -e '\|JAGS ?=|{s|jags|mcmc-&|;s|/usr/local|${PREFIX}|;}' \
		${WRKDIR}/classic-bugs/vol[12]/Makefile

post-install-DOCS-on:
	@${MKDIR} ${STAGEDIR}${DOCSDIR}
	@cd ${_DISTDIR}; ${INSTALL_DATA} ${PORTDOCS} ${STAGEDIR}${DOCSDIR}

post-install-EXAMPLES-on:
	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
	@cd ${WRKDIR}/classic-bugs; ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR}

.if defined(MAINTAINER_MODE)
BUILD_DEPENDS+=	${LOCALBASE}/lib/R/library/coda/R/coda.rdb:math/R-cran-coda

check test: install
.for i in 1 2
	@cd ${WRKDIR}/classic-bugs/vol${i}; ${SETENV} ${MAKE_ENV} \
	${MAKE_CMD} ${MAKE_ARGS} check
.endfor
	@${FIND} ${WRKDIR}/classic-bugs -type f -name check.log | ${SORT} | \
	${XARGS} -tI @  ${CAT} @

.endif
.include <bsd.port.mk>