%%PORTDOCS%%%%DOCSDIR%%/README4T-COFFEE %%PORTDOCS%%%%DOCSDIR%%/t_coffee.pdf %%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.doc %%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.html %%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.pdf %%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.ps %%PORTDOCS%%share/examples/t_coffee/seq/1aab_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1aboA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1aboA_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ac5_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ad2_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ad3_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1adj_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ag8_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1aho_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1aisB_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ajsA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ajsA_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ajsA_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/1amk_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ar1_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ar5A_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1au7A_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1aym3_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1bbt3_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1bgl_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ckaA_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1cpt_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1cpt_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1csp_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1csp_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1csy_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1csy_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1dlc_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1dox_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1eft_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1eft_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ezm_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1fieA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1fjlA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1fkj_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1fmb_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1gdoA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1gowA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1gpb_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1gtr_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1havA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1havA_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1hfh_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1hpi_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1idy_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1idy_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1idy_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ivy_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/1krn_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1lcf_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ldg_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1led_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1lkl_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1lvl_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1lvl_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1mfa_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1mrj_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pamA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pamA_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pamA_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ped_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ped_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ped_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pfc_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pfc_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pgtA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pii_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pkm_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1plc_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ppn_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1pysA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1qpg_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/1r69.pep %%PORTDOCS%%share/examples/t_coffee/seq/1r69_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1r69_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1r69_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/1rthA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1sbp_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1sbp_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1sesA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1taq_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1tgxA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1tgxA_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1thm1_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/1thm2_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/1thm_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1tis_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ton_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1tvxA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1tvxA_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ubi_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ubi_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ubi_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/1uky_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1uky_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1uky_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/1vln_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1wit_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1wit_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/1wit_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ycc_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1ycc_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/1zin_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2ack_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2cba_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2cba_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/2fxb_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2hsdA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2hsdA_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/2mhr_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2myr_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2myr_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/2myr_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/2pia_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2pia_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/2pia_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/2trx_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/2trx_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/3cyr_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/3grs_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/3grs_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/3pmg_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/451c_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/4enl_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/4enl_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/4enl_ref3.pep %%PORTDOCS%%share/examples/t_coffee/seq/5ptp_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/9rnt_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/S51_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/S52_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/actin_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/arp_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/gal4_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/glg_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/kinase1_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/kinase1_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/kinase2_ref4.pep %%PORTDOCS%%share/examples/t_coffee/seq/kinase2_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/kinase3_ref5.pep %%PORTDOCS%%share/examples/t_coffee/seq/kinase_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/kinase_ref2.pep %%PORTDOCS%%share/examples/t_coffee/seq/kinase_ref3.pep %%PORTDOCS%%share/examples/t_coffee/tc_aln/1aab_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1aboA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1aboA_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ac5_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ad2_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ad3_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1adj_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ag8_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1aho_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1aisB_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ajsA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ajsA_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ajsA_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1amk_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ar1_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ar5A_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1au7A_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1aym3_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1bbt3_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1bgl_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ckaA_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1cpt_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1cpt_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1csp_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1csp_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1csy_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1csy_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1dlc_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1dox_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1eft_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1eft_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ezm_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1fieA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1fjlA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1fkj_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1fmb_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1gdoA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1gowA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1gpb_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1gtr_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1havA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1havA_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1hfh_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1hpi_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1idy_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1idy_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1idy_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ivy_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1krn_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1lcf_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ldg_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1led_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1lkl_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1lvl_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1lvl_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1mfa_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1mrj_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pamA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pamA_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pamA_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ped_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ped_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ped_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pfc_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pfc_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pgtA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pii_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pkm_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1plc_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ppn_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1pysA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1qpg_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1r69.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1r69_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1r69_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1r69_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1rthA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1sbp_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1sbp_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1sesA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1taq_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1tgxA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1tgxA_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1thm1_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1thm2_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1thm_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1tis_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ton_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1tvxA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1tvxA_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ubi_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ubi_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ubi_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1uky_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1uky_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1uky_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1vln_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1wit_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1wit_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1wit_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ycc_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1ycc_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/1zin_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2ack_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2cba_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2cba_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2fxb_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2hsdA_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2hsdA_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2mhr_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2myr_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2myr_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2myr_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2pia_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2pia_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2pia_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2trx_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/2trx_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/3cyr_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/3grs_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/3grs_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/3pmg_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/451c_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/4enl_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/4enl_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/4enl_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/5ptp_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/9rnt_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/S51_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/S52_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/actin_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/arp_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/gal4_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/glg_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/kinase1_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/kinase1_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/kinase2_ref4.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/kinase2_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/kinase3_ref5.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/kinase_ref1.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/kinase_ref2.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/tc_aln/kinase_ref3.t_coffee_aln10 %%PORTDOCS%%share/examples/t_coffee/test/reference_test.aln %%PORTDOCS%%share/examples/t_coffee/test/test.pep %%PORTDOCS%%share/t_coffee/t_coffee.html %%PORTDOCS%%share/t_coffee/t_coffee4html.cgi %%PORTDOCS%%share/t_coffee/t_coffee_doc.html bin/extract_from_pdb bin/lalign2list bin/mocca bin/t_coffee %%PORTDOCS%%@dirrm share/t_coffee %%PORTDOCS%%@dirrm share/examples/t_coffee/test %%PORTDOCS%%@dirrm share/examples/t_coffee/tc_aln %%PORTDOCS%%@dirrm share/examples/t_coffee/seq %%PORTDOCS%%@dirrm share/examples/t_coffee %%PORTDOCS%%@dirrm %%DOCSDIR%%