From the website:

  T-Coffee is a multiple sequence alignment package. Given a set of sequences
  (Proteins or DNA), T-Coffee generates a multiple sequence alignment.

  Related publications:
  - T-Coffee: A novel method for multiple sequence alignments.  C.Notredame,
    D. Higgins, J. Heringa, Journal of Molecular Biology,Vol 302,
    pp205-217,2000
  - COFFEE: A New Objective Function For Multiple Sequence Alignmnent.
    C.  Notredame, L. Holme and D.G. Higgins,Bioinformatics,Vol 14 (5)
    407-422,1998

Author: Cedric Notredame <cedric.notredame@europe.com>
WWW:    http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html

-- Johann Visagie <wjv@FreeBSD.org>