/biology/ssaha/files/

• ../
• patch-GlobalDefinitions.cpp
• patch-GlobalDefinitions.h
• patch-HashTable.cpp
• patch-HashTableGeneric.cpp
• patch-HashTablePacked.cpp
• patch-HashTablePacked.h
• patch-HashTableTranslated.cpp
• patch-MatchAligner.cpp
• patch-MatchAligner.h
• patch-MatchStore.h
• patch-MatchStoreGapped.h
• patch-MatchStoreUngapped.h
• patch-QueryManager.cpp
• patch-QueryManager.h
• patch-README
• patch-SSAHAMain.cpp
• patch-SSAHAMain.h
• patch-SequenceEncoder.cpp
• patch-SequenceReader.cpp
• patch-SequenceReader.h
• patch-SequenceReaderFasta.cpp
• patch-SequenceReaderFasta.h
• patch-SequenceReaderFilter.h
• patch-SequenceReaderLocal.cpp
• patch-SequenceReaderMulti.cpp
• patch-SequenceReaderMulti.h
• patch-SequenceReaderString.h
• patch-makefile
• patch-testHashTableNoOverlap.cpp
• patch-testQueryManager.cpp
• patch-testSequenceReaderFasta.cpp