bin/coords2coords
bin/coulomb
bin/dcd2dcd
bin/iSGProtomol
bin/protomol
bin/xyzviz
%%PORTDOCS%%%%EXAMPLESDIR%%/coulomb_309/309ca.config
%%PORTDOCS%%%%EXAMPLESDIR%%/coulomb_309/309ca.par
%%PORTDOCS%%%%EXAMPLESDIR%%/coulomb_309/309ca.pos.xyz
%%PORTDOCS%%%%EXAMPLESDIR%%/coulomb_309/309ca.psf
%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.equil.psf
%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.7ns.namd
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%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/ala607.pgn
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%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.par
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%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.shake.conf
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%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/runButaneTests.sh
%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/README
%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/UA_butane.conf
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%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/angleSetDHMC
%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/cleanOutput.bash
%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/dihedralSetDHMC
%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/procDihedralFile.awk
%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/runButaneResults.sh
%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equil.pdb
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%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equilibrated.pgn
%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/dihedralIndexSet
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%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.testSet
%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.water.pdb
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%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/22el.conf
%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/22el.pos.xyz
%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/22el.psf
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%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/el.par
%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/iSGMD_README
%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane.par
%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane.trans
%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100.conf
%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.coor.xyz
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%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300.conf
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%%PORTDOCS%%%%EXAMPLESDIR%%/testset/test.tcsh
%%PORTDOCS%%%%EXAMPLESDIR%%/testset/README
%%PORTDOCS%%%%EXAMPLESDIR%%/testset/hmc.Bsp_PME.pb.conf
%%PORTDOCS%%%%EXAMPLESDIR%%/testset/hmc.std.conf
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%%PORTDOCS%%%%EXAMPLESDIR%%/testset/slf.std.pb.conf
%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.vel.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.conf
%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.coor.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.new.pos.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.new.vel.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.par
%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.psf
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.tip3.psf
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.fluid.conf
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.fluid.pos.xyz
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.ice.conf
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.ice.nvt.conf
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.ice.pos.xyz
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.spce.par
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.spce.psf
%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.tip3.par
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/coulomb_309
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/alanine_dipeptide_water_184x
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/argon_400
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/bpti_water_1101
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/bpti_water_14281
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/butane_4
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/alanine_dipeptide_23
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/decalanine_66
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/electrons_22
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/methane_ethane_xxx
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/testset
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/water_216
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/water_648
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%