bin/TransDecoder.LongOrfs
bin/TransDecoder.Predict
%%SITE_PERL%%/transdecoder/DelimParser.pm
%%SITE_PERL%%/transdecoder/Fasta_reader.pm
%%SITE_PERL%%/transdecoder/Fasta_retriever.pm
%%SITE_PERL%%/transdecoder/GFF3_utils2.pm
%%SITE_PERL%%/transdecoder/GTF.pm
%%SITE_PERL%%/transdecoder/GTF_utils2.pm
%%SITE_PERL%%/transdecoder/Gene_obj.pm
%%SITE_PERL%%/transdecoder/Longest_orf.pm
%%SITE_PERL%%/transdecoder/Nuc_translator.pm
%%SITE_PERL%%/transdecoder/Overlap_piler.pm
%%SITE_PERL%%/transdecoder/PWM.pm
%%SITE_PERL%%/transdecoder/Pipeliner.pm
%%SITE_PERL%%/transdecoder/Process_cmd.pm
%%SITE_PERL%%/transdecoder/overlapping_nucs.ph
libexec/transdecoder/cdna_alignment_orf_to_genome_orf.pl
libexec/transdecoder/compute_base_probs.pl
libexec/transdecoder/exclude_similar_proteins.pl
libexec/transdecoder/fasta_prot_checker.pl
libexec/transdecoder/ffindex_resume.pl
libexec/transdecoder/gene_list_to_gff.pl
libexec/transdecoder/get_FL_accs.pl
libexec/transdecoder/get_longest_ORF_per_transcript.pl
libexec/transdecoder/get_top_longest_fasta_entries.pl
libexec/transdecoder/gff3_file_to_bed.pl
libexec/transdecoder/gff3_file_to_proteins.pl
libexec/transdecoder/gff3_gene_to_gtf_format.pl
libexec/transdecoder/gtf_genome_to_cdna_fasta.pl
libexec/transdecoder/gtf_to_alignment_gff3.pl
libexec/transdecoder/gtf_to_bed.pl
libexec/transdecoder/nr_ORFs_gff3.pl
libexec/transdecoder/pfam_runner.pl
libexec/transdecoder/refine_gff3_group_iso_strip_utrs.pl
libexec/transdecoder/refine_hexamer_scores.pl
libexec/transdecoder/remove_eclipsed_ORFs.pl
libexec/transdecoder/score_CDS_likelihood_all_6_frames.pl
libexec/transdecoder/select_best_ORFs_per_transcript.pl
libexec/transdecoder/seq_n_baseprobs_to_loglikelihood_vals.pl
libexec/transdecoder/start_codon_refinement.pl
libexec/transdecoder/train_start_PWM.pl
libexec/transdecoder/uri_unescape.pl