%%PLIST_EMNU%%bin/emnu %%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd %%PLIST_HMMER%%bin/ealistat %%PLIST_HMMER%%bin/ehmmalign %%PLIST_HMMER%%bin/ehmmbuild %%PLIST_HMMER%%bin/ehmmcalibrate %%PLIST_HMMER%%bin/ehmmconvert %%PLIST_HMMER%%bin/ehmmemit %%PLIST_HMMER%%bin/ehmmfetch %%PLIST_HMMER%%bin/ehmmindex %%PLIST_HMMER%%bin/ehmmpfam %%PLIST_HMMER%%bin/ehmmsearch %%PLIST_HMMER%%lib/libhmmer.a %%PLIST_HMMER%%lib/libhmmer.la %%PLIST_HMMER%%lib/libhmmer.so %%PLIST_HMMER%%lib/libhmmer.so.2 %%PLIST_HMMER%%share/EMBOSS/acd/ealistat.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmalign.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmbuild.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmcalibrate.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmconvert.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmemit.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmfetch.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmindex.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmpfam.acd %%PLIST_HMMER%%share/EMBOSS/acd/ehmmsearch.acd %%PLIST_MEME%%bin/meme %%PLIST_MEME%%lib/libmeme.a %%PLIST_MEME%%lib/libmeme.la %%PLIST_MEME%%lib/libmeme.so %%PLIST_MEME%%lib/libmeme.so.2 %%PLIST_MEME%%share/EMBOSS/acd/meme.acd %%PLIST_MSE%%bin/mse %%PLIST_MSE%%lib/libckit.a %%PLIST_MSE%%lib/libckit.la %%PLIST_MSE%%lib/libckit.so %%PLIST_MSE%%lib/libckit.so.1 %%PLIST_MSE%%share/EMBOSS/acd/mse.acd %%PLIST_PHYLIP%%bin/eclique %%PLIST_PHYLIP%%bin/econsense %%PLIST_PHYLIP%%bin/econtml %%PLIST_PHYLIP%%bin/econtrast %%PLIST_PHYLIP%%bin/ednacomp %%PLIST_PHYLIP%%bin/ednadist %%PLIST_PHYLIP%%bin/ednainvar %%PLIST_PHYLIP%%bin/ednaml %%PLIST_PHYLIP%%bin/ednamlk %%PLIST_PHYLIP%%bin/ednapars %%PLIST_PHYLIP%%bin/ednapenny %%PLIST_PHYLIP%%bin/edollop %%PLIST_PHYLIP%%bin/edolpenny %%PLIST_PHYLIP%%bin/efactor %%PLIST_PHYLIP%%bin/efitch %%PLIST_PHYLIP%%bin/egendist %%PLIST_PHYLIP%%bin/ekitsch %%PLIST_PHYLIP%%bin/emix %%PLIST_PHYLIP%%bin/eneighbor %%PLIST_PHYLIP%%bin/epenny %%PLIST_PHYLIP%%bin/eprotdist %%PLIST_PHYLIP%%bin/eprotpars %%PLIST_PHYLIP%%bin/erestml %%PLIST_PHYLIP%%bin/eseqboot %%PLIST_PHYLIP%%share/EMBOSS/acd/eclique.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/econsense.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/econtml.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/econtrast.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/ednacomp.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/ednadist.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/ednainvar.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/ednaml.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/ednamlk.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/ednapars.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/ednapenny.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/edollop.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/edolpenny.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/efactor.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/efitch.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/egendist.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/ekitsch.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/emix.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/eneighbor.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/epenny.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/eprotdist.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/eprotpars.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/erestml.acd %%PLIST_PHYLIP%%share/EMBOSS/acd/eseqboot.acd %%PLIST_TOPO%%bin/topo %%PLIST_TOPO%%share/EMBOSS/acd/topo.acd bin/abiview bin/acdc bin/alignwrap bin/antigenic bin/backtranseq bin/banana bin/biosed bin/btwisted bin/cai bin/chaos bin/charge bin/checktrans bin/chips bin/cirdna bin/codcmp bin/coderet bin/compseq bin/cons bin/contacts bin/cpgplot bin/cpgreport bin/cusp bin/cutgextract bin/cutseq bin/dan bin/dbiblast bin/dbifasta bin/dbiflat bin/dbigcg bin/degapseq bin/descseq bin/dichet bin/diffseq bin/digest bin/distmat bin/domainer bin/dotmatcher bin/dotpath bin/dottup bin/dreg bin/einverted bin/embossdata bin/embossversion bin/emma bin/emowse bin/entret bin/equicktandem bin/est2genome bin/etandem bin/extractfeat bin/extractseq bin/findkm bin/freak bin/fuzznuc bin/fuzzpro bin/fuzztran bin/garnier bin/geecee bin/getorf bin/helixturnhelix bin/hmoment bin/iep bin/infoalign bin/infoseq bin/isochore bin/lindna bin/listor bin/marscan bin/maskfeat bin/maskseq bin/matcher bin/megamerger bin/merger bin/msbar bin/mwfilter bin/needle bin/newcpgreport bin/newcpgseek bin/newseq bin/noreturn bin/notseq bin/nrscope bin/nthseq bin/octanol bin/oddcomp bin/palindrome bin/pasteseq bin/patmatdb bin/patmatmotifs bin/pepcoil bin/pepinfo bin/pepnet bin/pepstats bin/pepwheel bin/pepwindow bin/pepwindowall bin/plotcon bin/plotorf bin/polydot bin/preg bin/prettyplot bin/prettyseq bin/primersearch bin/printsextract bin/profit bin/prophecy bin/prophet bin/prosextract bin/pscan bin/psiblasts bin/rebaseextract bin/recoder bin/redata bin/remap bin/restover bin/restrict bin/revseq bin/runJemboss.csh bin/scopalign bin/scope bin/seealso bin/seqmatchall bin/seqret bin/seqretsplit bin/showalign bin/showdb bin/showfeat bin/showorf bin/showseq bin/shuffleseq bin/sigcleave bin/siggen bin/sigscan bin/silent bin/splitter bin/stretcher bin/stssearch bin/supermatcher bin/swissparse bin/syco bin/textsearch bin/tfextract bin/tfm bin/tfscan bin/tmap bin/transeq bin/trimest bin/trimseq bin/vectorstrip bin/water bin/wobble bin/wordcount bin/wordmatch bin/wossname etc/emboss.default.sample lib/libajax.a lib/libajax.la lib/libajax.so lib/libajax.so.1 lib/libajaxg.a lib/libajaxg.la lib/libajaxg.so lib/libajaxg.so.1 lib/libnucleus.a lib/libnucleus.la lib/libnucleus.so lib/libnucleus.so.1 lib/libplplot.a lib/libplplot.la lib/libplplot.so lib/libplplot.so.5 share/EMBOSS/acd/abiview.acd share/EMBOSS/acd/ajbad.acd share/EMBOSS/acd/ajfeatest.acd share/EMBOSS/acd/ajtest.acd share/EMBOSS/acd/alignwrap.acd share/EMBOSS/acd/antigenic.acd share/EMBOSS/acd/backtranseq.acd share/EMBOSS/acd/banana.acd share/EMBOSS/acd/biosed.acd share/EMBOSS/acd/btwisted.acd share/EMBOSS/acd/cai.acd share/EMBOSS/acd/chaos.acd share/EMBOSS/acd/charge.acd share/EMBOSS/acd/checktrans.acd share/EMBOSS/acd/chips.acd share/EMBOSS/acd/cirdna.acd share/EMBOSS/acd/codcmp.acd share/EMBOSS/acd/coderet.acd share/EMBOSS/acd/codes.english share/EMBOSS/acd/complex.acd share/EMBOSS/acd/compseq.acd share/EMBOSS/acd/cons.acd share/EMBOSS/acd/contacts.acd share/EMBOSS/acd/corbatest.acd share/EMBOSS/acd/cpgplot.acd share/EMBOSS/acd/cpgreport.acd share/EMBOSS/acd/cusp.acd share/EMBOSS/acd/cutgextract.acd share/EMBOSS/acd/cutseq.acd share/EMBOSS/acd/dan.acd share/EMBOSS/acd/dbiblast.acd share/EMBOSS/acd/dbifasta.acd share/EMBOSS/acd/dbiflat.acd share/EMBOSS/acd/dbigcg.acd share/EMBOSS/acd/degapseq.acd share/EMBOSS/acd/demoalign.acd share/EMBOSS/acd/demofeatures.acd share/EMBOSS/acd/demolist.acd share/EMBOSS/acd/demoreport.acd share/EMBOSS/acd/demosequence.acd share/EMBOSS/acd/demostring.acd share/EMBOSS/acd/demotable.acd share/EMBOSS/acd/descseq.acd share/EMBOSS/acd/dichet.acd share/EMBOSS/acd/diffseq.acd share/EMBOSS/acd/digest.acd share/EMBOSS/acd/distmat.acd share/EMBOSS/acd/domainer.acd share/EMBOSS/acd/dotmatcher.acd share/EMBOSS/acd/dotpath.acd share/EMBOSS/acd/dottup.acd share/EMBOSS/acd/dreg.acd share/EMBOSS/acd/einverted.acd share/EMBOSS/acd/embossdata.acd share/EMBOSS/acd/embossversion.acd share/EMBOSS/acd/emma.acd share/EMBOSS/acd/emowse.acd share/EMBOSS/acd/entrails.acd share/EMBOSS/acd/entret.acd share/EMBOSS/acd/eprimer3.acd share/EMBOSS/acd/equicktandem.acd share/EMBOSS/acd/est2genome.acd share/EMBOSS/acd/etandem.acd share/EMBOSS/acd/extractfeat.acd share/EMBOSS/acd/extractseq.acd share/EMBOSS/acd/findkm.acd share/EMBOSS/acd/freak.acd share/EMBOSS/acd/fuzznuc.acd share/EMBOSS/acd/fuzzpro.acd share/EMBOSS/acd/fuzztran.acd share/EMBOSS/acd/garnier.acd share/EMBOSS/acd/geecee.acd share/EMBOSS/acd/getorf.acd share/EMBOSS/acd/helixturnhelix.acd share/EMBOSS/acd/histogramtest.acd share/EMBOSS/acd/hmoment.acd share/EMBOSS/acd/iep.acd share/EMBOSS/acd/infoalign.acd share/EMBOSS/acd/infoseq.acd share/EMBOSS/acd/interface.acd share/EMBOSS/acd/isochore.acd share/EMBOSS/acd/lindna.acd share/EMBOSS/acd/listor.acd share/EMBOSS/acd/marscan.acd share/EMBOSS/acd/maskfeat.acd share/EMBOSS/acd/maskseq.acd share/EMBOSS/acd/matcher.acd share/EMBOSS/acd/megamerger.acd share/EMBOSS/acd/merger.acd share/EMBOSS/acd/msbar.acd share/EMBOSS/acd/mwfilter.acd share/EMBOSS/acd/needle.acd share/EMBOSS/acd/newcpgreport.acd share/EMBOSS/acd/newcpgseek.acd share/EMBOSS/acd/newseq.acd share/EMBOSS/acd/noreturn.acd share/EMBOSS/acd/notseq.acd share/EMBOSS/acd/nrscope.acd share/EMBOSS/acd/nthseq.acd share/EMBOSS/acd/octanol.acd share/EMBOSS/acd/oddcomp.acd share/EMBOSS/acd/palindrome.acd share/EMBOSS/acd/pasteseq.acd share/EMBOSS/acd/patmatdb.acd share/EMBOSS/acd/patmatmotifs.acd share/EMBOSS/acd/patmattest.acd share/EMBOSS/acd/pdbtosp.acd share/EMBOSS/acd/pepcoil.acd share/EMBOSS/acd/pepinfo.acd share/EMBOSS/acd/pepnet.acd share/EMBOSS/acd/pepstats.acd share/EMBOSS/acd/pepwheel.acd share/EMBOSS/acd/pepwindow.acd share/EMBOSS/acd/pepwindowall.acd share/EMBOSS/acd/plotcon.acd share/EMBOSS/acd/plotorf.acd share/EMBOSS/acd/polydot.acd share/EMBOSS/acd/preg.acd share/EMBOSS/acd/prettyplot.acd share/EMBOSS/acd/prettyseq.acd share/EMBOSS/acd/prima.acd share/EMBOSS/acd/primers.acd share/EMBOSS/acd/primersearch.acd share/EMBOSS/acd/printsextract.acd share/EMBOSS/acd/profit.acd share/EMBOSS/acd/prophecy.acd share/EMBOSS/acd/prophet.acd share/EMBOSS/acd/prosextract.acd share/EMBOSS/acd/pscan.acd share/EMBOSS/acd/psiblasts.acd share/EMBOSS/acd/rebaseextract.acd share/EMBOSS/acd/recoder.acd share/EMBOSS/acd/redata.acd share/EMBOSS/acd/remap.acd share/EMBOSS/acd/restover.acd share/EMBOSS/acd/restrict.acd share/EMBOSS/acd/revseq.acd share/EMBOSS/acd/scopalign.acd share/EMBOSS/acd/scopparse.acd share/EMBOSS/acd/scope.acd share/EMBOSS/acd/seealso.acd share/EMBOSS/acd/seqinfo.acd share/EMBOSS/acd/seqmatchall.acd share/EMBOSS/acd/seqnr.acd share/EMBOSS/acd/seqret.acd share/EMBOSS/acd/seqretall.acd share/EMBOSS/acd/seqretallfeat.acd share/EMBOSS/acd/seqretset.acd share/EMBOSS/acd/seqretsingle.acd share/EMBOSS/acd/seqretsplit.acd share/EMBOSS/acd/seqsort.acd share/EMBOSS/acd/showalign.acd share/EMBOSS/acd/showdb.acd share/EMBOSS/acd/showfeat.acd share/EMBOSS/acd/showorf.acd share/EMBOSS/acd/showseq.acd share/EMBOSS/acd/shuffleseq.acd share/EMBOSS/acd/sigcleave.acd share/EMBOSS/acd/siggen.acd share/EMBOSS/acd/sigscan.acd share/EMBOSS/acd/silent.acd share/EMBOSS/acd/splitter.acd share/EMBOSS/acd/stretcher.acd share/EMBOSS/acd/stssearch.acd share/EMBOSS/acd/supermatcher.acd share/EMBOSS/acd/swissparse.acd share/EMBOSS/acd/syco.acd share/EMBOSS/acd/testplot.acd share/EMBOSS/acd/textsearch.acd share/EMBOSS/acd/tfextract.acd share/EMBOSS/acd/tfm.acd share/EMBOSS/acd/tfscan.acd share/EMBOSS/acd/tmap.acd share/EMBOSS/acd/tranalign.acd share/EMBOSS/acd/transeq.acd share/EMBOSS/acd/treetypedisplay.acd share/EMBOSS/acd/trimest.acd share/EMBOSS/acd/trimseq.acd share/EMBOSS/acd/union.acd share/EMBOSS/acd/vectorstrip.acd share/EMBOSS/acd/water.acd share/EMBOSS/acd/whichdb.acd share/EMBOSS/acd/wobble.acd share/EMBOSS/acd/wordcount.acd share/EMBOSS/acd/wordmatch.acd share/EMBOSS/acd/wossname.acd share/EMBOSS/acd/yank.acd share/EMBOSS/data/CODONS/Eacc.cut share/EMBOSS/data/CODONS/Eadenovirus5.cut share/EMBOSS/data/CODONS/Eadenovirus7.cut share/EMBOSS/data/CODONS/Eaidlav.cut share/EMBOSS/data/CODONS/Eanasp.cut share/EMBOSS/data/CODONS/Eani.cut share/EMBOSS/data/CODONS/Eani_h.cut share/EMBOSS/data/CODONS/Eanidmit.cut share/EMBOSS/data/CODONS/Easn.cut share/EMBOSS/data/CODONS/Eath.cut share/EMBOSS/data/CODONS/Eatu.cut share/EMBOSS/data/CODONS/Eavi.cut share/EMBOSS/data/CODONS/Ebja.cut share/EMBOSS/data/CODONS/Ebly.cut share/EMBOSS/data/CODONS/Ebme.cut share/EMBOSS/data/CODONS/Ebmo.cut share/EMBOSS/data/CODONS/Ebna.cut share/EMBOSS/data/CODONS/Ebov.cut share/EMBOSS/data/CODONS/Ebovsp.cut share/EMBOSS/data/CODONS/Ebst.cut share/EMBOSS/data/CODONS/Ebsu.cut share/EMBOSS/data/CODONS/Ebsu_h.cut share/EMBOSS/data/CODONS/Ecac.cut share/EMBOSS/data/CODONS/Ecal.cut share/EMBOSS/data/CODONS/Eccr.cut share/EMBOSS/data/CODONS/Ecel.cut share/EMBOSS/data/CODONS/Echi.cut share/EMBOSS/data/CODONS/Echicken.cut share/EMBOSS/data/CODONS/Echisp.cut share/EMBOSS/data/CODONS/Echk.cut share/EMBOSS/data/CODONS/Echmp.cut share/EMBOSS/data/CODONS/Echnt.cut share/EMBOSS/data/CODONS/Echos.cut share/EMBOSS/data/CODONS/Echzm.cut share/EMBOSS/data/CODONS/Echzmrubp.cut share/EMBOSS/data/CODONS/Ecpx.cut share/EMBOSS/data/CODONS/Ecre.cut share/EMBOSS/data/CODONS/Ecrisp.cut share/EMBOSS/data/CODONS/Ectr.cut share/EMBOSS/data/CODONS/Edayhoff.cut share/EMBOSS/data/CODONS/Eddi.cut share/EMBOSS/data/CODONS/Eddi_h.cut share/EMBOSS/data/CODONS/Edog.cut share/EMBOSS/data/CODONS/Edro.cut share/EMBOSS/data/CODONS/Edro_h.cut share/EMBOSS/data/CODONS/Edrosophila.cut share/EMBOSS/data/CODONS/Eeca.cut share/EMBOSS/data/CODONS/Eeco.cut share/EMBOSS/data/CODONS/Eeco_h.cut share/EMBOSS/data/CODONS/Eecoli.cut share/EMBOSS/data/CODONS/Ef1.cut share/EMBOSS/data/CODONS/Efish.cut share/EMBOSS/data/CODONS/Efmdvpolyp.cut share/EMBOSS/data/CODONS/Eham.cut share/EMBOSS/data/CODONS/Ehha.cut share/EMBOSS/data/CODONS/Ehin.cut share/EMBOSS/data/CODONS/Ehma.cut share/EMBOSS/data/CODONS/Ehum.cut share/EMBOSS/data/CODONS/Ehuman.cut share/EMBOSS/data/CODONS/Ekla.cut share/EMBOSS/data/CODONS/Ekpn.cut share/EMBOSS/data/CODONS/Ella.cut share/EMBOSS/data/CODONS/Emac.cut share/EMBOSS/data/CODONS/Emaize.cut share/EMBOSS/data/CODONS/Emam_h.cut share/EMBOSS/data/CODONS/Emixlg.cut share/EMBOSS/data/CODONS/Emouse.cut share/EMBOSS/data/CODONS/Emsa.cut share/EMBOSS/data/CODONS/Emse.cut share/EMBOSS/data/CODONS/Emta.cut share/EMBOSS/data/CODONS/Emtu.cut share/EMBOSS/data/CODONS/Emus.cut share/EMBOSS/data/CODONS/Emussp.cut share/EMBOSS/data/CODONS/Emva.cut share/EMBOSS/data/CODONS/Emze.cut share/EMBOSS/data/CODONS/Emzecp.cut share/EMBOSS/data/CODONS/Encr.cut share/EMBOSS/data/CODONS/Eneu.cut share/EMBOSS/data/CODONS/Engo.cut share/EMBOSS/data/CODONS/Eoncsp.cut share/EMBOSS/data/CODONS/Epae.cut share/EMBOSS/data/CODONS/Epea.cut share/EMBOSS/data/CODONS/Epet.cut share/EMBOSS/data/CODONS/Epfa.cut share/EMBOSS/data/CODONS/Ephix174.cut share/EMBOSS/data/CODONS/Ephv.cut share/EMBOSS/data/CODONS/Ephy.cut share/EMBOSS/data/CODONS/Epig.cut share/EMBOSS/data/CODONS/Epolyomaa2.cut share/EMBOSS/data/CODONS/Epombe.cut share/EMBOSS/data/CODONS/Epombecai.cut share/EMBOSS/data/CODONS/Epot.cut share/EMBOSS/data/CODONS/Eppu.cut share/EMBOSS/data/CODONS/Epse.cut share/EMBOSS/data/CODONS/Epsy.cut share/EMBOSS/data/CODONS/Epvu.cut share/EMBOSS/data/CODONS/Erab.cut share/EMBOSS/data/CODONS/Erabbit.cut share/EMBOSS/data/CODONS/Erabsp.cut share/EMBOSS/data/CODONS/Erat.cut share/EMBOSS/data/CODONS/Eratsp.cut share/EMBOSS/data/CODONS/Erca.cut share/EMBOSS/data/CODONS/Erhm.cut share/EMBOSS/data/CODONS/Eric.cut share/EMBOSS/data/CODONS/Erle.cut share/EMBOSS/data/CODONS/Erme.cut share/EMBOSS/data/CODONS/Ersp.cut share/EMBOSS/data/CODONS/Esalsp.cut share/EMBOSS/data/CODONS/Esau.cut share/EMBOSS/data/CODONS/Esco.cut share/EMBOSS/data/CODONS/Esgi.cut share/EMBOSS/data/CODONS/Eshp.cut share/EMBOSS/data/CODONS/Eshpsp.cut share/EMBOSS/data/CODONS/Esli.cut share/EMBOSS/data/CODONS/Eslm.cut share/EMBOSS/data/CODONS/Esma.cut share/EMBOSS/data/CODONS/Esmi.cut share/EMBOSS/data/CODONS/Esmu.cut share/EMBOSS/data/CODONS/Esoy.cut share/EMBOSS/data/CODONS/Espi.cut share/EMBOSS/data/CODONS/Espn.cut share/EMBOSS/data/CODONS/Espo.cut share/EMBOSS/data/CODONS/Espo_h.cut share/EMBOSS/data/CODONS/Espu.cut share/EMBOSS/data/CODONS/Esta.cut share/EMBOSS/data/CODONS/Esty.cut share/EMBOSS/data/CODONS/Esus.cut share/EMBOSS/data/CODONS/Esv40.cut share/EMBOSS/data/CODONS/Esyhsp.cut share/EMBOSS/data/CODONS/Esynsp.cut share/EMBOSS/data/CODONS/Etbr.cut share/EMBOSS/data/CODONS/Etcr.cut share/EMBOSS/data/CODONS/Eter.cut share/EMBOSS/data/CODONS/Etetsp.cut share/EMBOSS/data/CODONS/Etob.cut share/EMBOSS/data/CODONS/Etobcp.cut share/EMBOSS/data/CODONS/Etom.cut share/EMBOSS/data/CODONS/Etrb.cut share/EMBOSS/data/CODONS/Evco.cut share/EMBOSS/data/CODONS/Ewht.cut share/EMBOSS/data/CODONS/Exel.cut share/EMBOSS/data/CODONS/Exenopus.cut share/EMBOSS/data/CODONS/Eyeast.cut share/EMBOSS/data/CODONS/Eyeastcai.cut share/EMBOSS/data/CODONS/Eyen.cut share/EMBOSS/data/CODONS/Eysc.cut share/EMBOSS/data/CODONS/Eysc_h.cut share/EMBOSS/data/CODONS/Eyscmt.cut share/EMBOSS/data/CODONS/Eysp.cut share/EMBOSS/data/CODONS/Ezebrafish.cut share/EMBOSS/data/CODONS/Ezma.cut share/EMBOSS/data/EBLOSUM30 share/EMBOSS/data/EBLOSUM35 share/EMBOSS/data/EBLOSUM40 share/EMBOSS/data/EBLOSUM45 share/EMBOSS/data/EBLOSUM50 share/EMBOSS/data/EBLOSUM55 share/EMBOSS/data/EBLOSUM60 share/EMBOSS/data/EBLOSUM62 share/EMBOSS/data/EBLOSUM62-12 share/EMBOSS/data/EBLOSUM65 share/EMBOSS/data/EBLOSUM70 share/EMBOSS/data/EBLOSUM75 share/EMBOSS/data/EBLOSUM80 share/EMBOSS/data/EBLOSUM85 share/EMBOSS/data/EBLOSUM90 share/EMBOSS/data/EBLOSUMN share/EMBOSS/data/EDNAFULL share/EMBOSS/data/EDNAMAT share/EMBOSS/data/EGC.0 share/EMBOSS/data/EGC.1 share/EMBOSS/data/EGC.10 share/EMBOSS/data/EGC.11 share/EMBOSS/data/EGC.12 share/EMBOSS/data/EGC.13 share/EMBOSS/data/EGC.14 share/EMBOSS/data/EGC.15 share/EMBOSS/data/EGC.16 share/EMBOSS/data/EGC.2 share/EMBOSS/data/EGC.21 share/EMBOSS/data/EGC.22 share/EMBOSS/data/EGC.23 share/EMBOSS/data/EGC.3 share/EMBOSS/data/EGC.4 share/EMBOSS/data/EGC.5 share/EMBOSS/data/EGC.6 share/EMBOSS/data/EGC.9 share/EMBOSS/data/ENUC.4.2 share/EMBOSS/data/ENUC.4.4 share/EMBOSS/data/EPAM10 share/EMBOSS/data/EPAM100 share/EMBOSS/data/EPAM110 share/EMBOSS/data/EPAM120 share/EMBOSS/data/EPAM130 share/EMBOSS/data/EPAM140 share/EMBOSS/data/EPAM150 share/EMBOSS/data/EPAM160 share/EMBOSS/data/EPAM170 share/EMBOSS/data/EPAM180 share/EMBOSS/data/EPAM190 share/EMBOSS/data/EPAM20 share/EMBOSS/data/EPAM200 share/EMBOSS/data/EPAM210 share/EMBOSS/data/EPAM220 share/EMBOSS/data/EPAM230 share/EMBOSS/data/EPAM240 share/EMBOSS/data/EPAM250 share/EMBOSS/data/EPAM260 share/EMBOSS/data/EPAM270 share/EMBOSS/data/EPAM280 share/EMBOSS/data/EPAM290 share/EMBOSS/data/EPAM30 share/EMBOSS/data/EPAM300 share/EMBOSS/data/EPAM310 share/EMBOSS/data/EPAM320 share/EMBOSS/data/EPAM330 share/EMBOSS/data/EPAM340 share/EMBOSS/data/EPAM350 share/EMBOSS/data/EPAM360 share/EMBOSS/data/EPAM370 share/EMBOSS/data/EPAM380 share/EMBOSS/data/EPAM390 share/EMBOSS/data/EPAM40 share/EMBOSS/data/EPAM400 share/EMBOSS/data/EPAM410 share/EMBOSS/data/EPAM420 share/EMBOSS/data/EPAM430 share/EMBOSS/data/EPAM440 share/EMBOSS/data/EPAM450 share/EMBOSS/data/EPAM460 share/EMBOSS/data/EPAM470 share/EMBOSS/data/EPAM480 share/EMBOSS/data/EPAM490 share/EMBOSS/data/EPAM50 share/EMBOSS/data/EPAM500 share/EMBOSS/data/EPAM60 share/EMBOSS/data/EPAM70 share/EMBOSS/data/EPAM80 share/EMBOSS/data/EPAM90 share/EMBOSS/data/Eaa_acc_surface.dat share/EMBOSS/data/Eaa_hydropathy.dat share/EMBOSS/data/Eaa_properties.dat share/EMBOSS/data/Eamino.dat share/EMBOSS/data/Eangles.dat share/EMBOSS/data/Eangles_tri.dat share/EMBOSS/data/Eantigenic.dat share/EMBOSS/data/Ebases.iub share/EMBOSS/data/Edayhoff.freq share/EMBOSS/data/Edna.melt share/EMBOSS/data/Eembl.ior share/EMBOSS/data/Eenergy.dat share/EMBOSS/data/Efeatures.embl share/EMBOSS/data/Efeatures.emboss share/EMBOSS/data/Efeatures.gff share/EMBOSS/data/Efeatures.pir share/EMBOSS/data/Efeatures.protein share/EMBOSS/data/Efeatures.swiss share/EMBOSS/data/Efreqs.dat share/EMBOSS/data/Ehth.dat share/EMBOSS/data/Ehth87.dat share/EMBOSS/data/Ememe.dat share/EMBOSS/data/Enakai.dat share/EMBOSS/data/Epepcoil.dat share/EMBOSS/data/Epk.dat share/EMBOSS/data/Epprofile share/EMBOSS/data/Eprior1.plib share/EMBOSS/data/Eprior30.plib share/EMBOSS/data/Erna.melt share/EMBOSS/data/Esig.euk share/EMBOSS/data/Esig.pro share/EMBOSS/data/Etags.embl share/EMBOSS/data/Etags.emboss share/EMBOSS/data/Etags.gff share/EMBOSS/data/Etags.pir share/EMBOSS/data/Etags.protein share/EMBOSS/data/Etags.swiss share/EMBOSS/data/Ewhite-wimley.dat share/EMBOSS/data/PRINTS/dummyfile share/EMBOSS/data/PROSITE/dummyfile share/EMBOSS/data/REBASE/dummyfile share/EMBOSS/data/embossre.equ share/EMBOSS/emboss.default.template share/EMBOSS/jemboss/README share/EMBOSS/jemboss/LICENSE share/EMBOSS/jemboss/api/allclasses-frame.html share/EMBOSS/jemboss/api/deprecated-list.html share/EMBOSS/jemboss/api/getClasses.pl share/EMBOSS/jemboss/api/help-doc.html share/EMBOSS/jemboss/api/index-all.html share/EMBOSS/jemboss/api/index.html share/EMBOSS/jemboss/api/makeDocs.csh share/EMBOSS/jemboss/api/org/emboss/jemboss/Jemboss.html share/EMBOSS/jemboss/api/org/emboss/jemboss/Jemboss.winExit.html share/EMBOSS/jemboss/api/org/emboss/jemboss/JembossLogo.html share/EMBOSS/jemboss/api/org/emboss/jemboss/JembossParams.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/BuildProgramMenu.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ResultsMenuBar.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/SetUpMenuBar.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ShowResultSet.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ShowSavedResults.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/SwingWorker.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/DragTree.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.PopupListener.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileNode.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileSaving.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/BuildJembossForm.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/ListFilePanel.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SectionPanel.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SetInFileCard.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SetOutFileCard.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.DecimalNumberDocument.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.WholeNumberDocument.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldSink.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/myComboPopup.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/myComboPopup.myComboUI.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/FileChooser.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/Database.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.HorizontalMenu.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.html share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/Splash.html share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/AcdFunResolve.html share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/AcdVarResolve.html share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/Ajax.html share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/Dependent.html share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/ParseAcd.html share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/Application.html share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationFields.html share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationParam.html share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/JembossProcess.html share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/ListFile.html share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/ResultList.html share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/RunEmbossApplication.html share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/AuthPopup.html share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/CallAjax.html share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/GetWossname.html share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/JembossRun.html share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/JembossSoapException.html share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/PendingResults.html share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/PrivateRequest.html share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/ResListView.html share/EMBOSS/jemboss/api/overview-tree.html share/EMBOSS/jemboss/api/package-list share/EMBOSS/jemboss/api/packages.html share/EMBOSS/jemboss/api/serialized-form.html share/EMBOSS/jemboss/api/stylesheet.css share/EMBOSS/jemboss/images/Backward_arrow_button.gif share/EMBOSS/jemboss/images/Forward_arrow_button.gif share/EMBOSS/jemboss/images/Go_button.gif share/EMBOSS/jemboss/images/Information_button.gif share/EMBOSS/jemboss/images/Jemboss_logo_greyback.gif share/EMBOSS/jemboss/images/Jemboss_logo_large.gif share/EMBOSS/jemboss/images/Jemboss_logo_small.gif share/EMBOSS/jemboss/images/Job_manager_button.gif share/EMBOSS/jemboss/images/Refresh_button.gif share/EMBOSS/jemboss/images/Refresh_button2.gif share/EMBOSS/jemboss/lib/README share/EMBOSS/jemboss/lib/activation.jar share/EMBOSS/jemboss/lib/jakarta-regexp-1.2.jar share/EMBOSS/jemboss/lib/jalview.jar share/EMBOSS/jemboss/lib/mail.jar share/EMBOSS/jemboss/lib/soap.jar share/EMBOSS/jemboss/lib/xerces.jar share/EMBOSS/jemboss/lib/jcert.jar share/EMBOSS/jemboss/lib/jnet.jar share/EMBOSS/jemboss/lib/jsse.jar share/EMBOSS/jemboss/org/emboss/jemboss/Jemboss.java share/EMBOSS/jemboss/org/emboss/jemboss/JembossLogo.java share/EMBOSS/jemboss/org/emboss/jemboss/JembossParams.java share/EMBOSS/jemboss/org/emboss/jemboss/JembossJarUtil.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/AdvancedOptions.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/BuildProgramMenu.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/LaunchJalView.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/ResultsMenuBar.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/SetUpMenuBar.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/ShowResultSet.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/ShowSavedResults.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/SwingWorker.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/SequenceData.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/SequenceList.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/MemoryComboBox.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/DragTree.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileEditorDisplay.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileNode.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileSave.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileSaving.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteDragTree.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileNode.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileTreePanel.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/BuildJembossForm.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/ListFilePanel.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/MultiLineToolTipUI.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/PlafMacros.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SectionPanel.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/Separator.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SetInFileCard.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SetOutFileCard.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldFloat.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldInt.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldSink.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/myComboPopup.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/FileChooser.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/Database.java share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/ProgList.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdFunResolve.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdVarResolve.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/Ajax.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/Dependent.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/ParseAcd.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/Application.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/ApplicationFields.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/ApplicationParam.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdVariableResolve.java share/EMBOSS/jemboss/org/emboss/jemboss/parser/AjaxUtil.java share/EMBOSS/jemboss/org/emboss/jemboss/programs/BatchUpdateTimer.java share/EMBOSS/jemboss/org/emboss/jemboss/programs/JembossProcess.java share/EMBOSS/jemboss/org/emboss/jemboss/programs/ListFile.java share/EMBOSS/jemboss/org/emboss/jemboss/programs/ResultList.java share/EMBOSS/jemboss/org/emboss/jemboss/programs/ResultsUpdateTimer.java share/EMBOSS/jemboss/org/emboss/jemboss/programs/RunEmbossApplication.java share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossServer.java share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossFileServer.java share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossThread.java share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossAuthServer.java share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossAuthThread.java share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossFileAuthServer.java share/EMBOSS/jemboss/org/emboss/jemboss/server/TestPublicServer.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/AuthPopup.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/CallAjax.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetWossname.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/JembossRun.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/JembossSoapException.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/PendingResults.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/PrivateRequest.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/ServerSetup.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/FileRoots.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/FileList.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/PublicRequest.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetACD.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetHelp.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/ShowDB.java share/EMBOSS/jemboss/org/emboss/jemboss/soap/MakeFileSafe.java share/EMBOSS/jemboss/utils/install-jemboss-server.sh share/EMBOSS/jemboss/utils/keys.sh share/EMBOSS/jemboss/utils/makeJNLP.sh share/EMBOSS/jemboss/utils/template.html share/EMBOSS/jemboss/utils/README share/EMBOSS/jemboss/utils/makeJar.csh share/EMBOSS/jemboss/readme.html share/EMBOSS/jemboss/resources/jemboss.properties share/EMBOSS/jemboss/resources/readme.txt share/EMBOSS/jemboss/resources/version share/EMBOSS/jemboss/runJemboss.csh share/EMBOSS/plstnd5.fnt share/EMBOSS/plxtnd5.fnt share/EMBOSS/test/data/aligna.dna share/EMBOSS/test/data/aligna.prot share/EMBOSS/test/data/alignapart.dna share/EMBOSS/test/data/alignapart.prot share/EMBOSS/test/data/alignb.dna share/EMBOSS/test/data/alignb.prot share/EMBOSS/test/data/dna.acedb share/EMBOSS/test/data/dna.aln share/EMBOSS/test/data/dna.asn1 share/EMBOSS/test/data/dna.codata share/EMBOSS/test/data/dna.embl share/EMBOSS/test/data/dna.fasta share/EMBOSS/test/data/dna.fitch share/EMBOSS/test/data/dna.gcg share/EMBOSS/test/data/dna.gcg8 share/EMBOSS/test/data/dna.genbank share/EMBOSS/test/data/dna.ig share/EMBOSS/test/data/dna.m-acedb share/EMBOSS/test/data/dna.m-codata share/EMBOSS/test/data/dna.m-embl share/EMBOSS/test/data/dna.m-fasta share/EMBOSS/test/data/dna.m-fasta-long share/EMBOSS/test/data/dna.m-ncbi share/EMBOSS/test/data/dna.m-strider share/EMBOSS/test/data/dna.msf share/EMBOSS/test/data/dna.msf8 share/EMBOSS/test/data/dna.ncbi share/EMBOSS/test/data/dna.phylip share/EMBOSS/test/data/dna.phylip3 share/EMBOSS/test/data/dna.staden share/EMBOSS/test/data/dna.strider share/EMBOSS/test/data/dna.text share/EMBOSS/test/data/feat.emft share/EMBOSS/test/data/feat.fasta share/EMBOSS/test/data/feat.pir share/EMBOSS/test/data/paamir.pep share/EMBOSS/test/data/pax6_cdna.fasta share/EMBOSS/test/data/prot.acedb share/EMBOSS/test/data/prot.codata share/EMBOSS/test/data/prot.fasta share/EMBOSS/test/data/prot.gcg share/EMBOSS/test/data/prot.gcg8 share/EMBOSS/test/data/prot.ig share/EMBOSS/test/data/prot.m-acedb share/EMBOSS/test/data/prot.m-codata share/EMBOSS/test/data/prot.m-fasta share/EMBOSS/test/data/prot.m-nbrf share/EMBOSS/test/data/prot.m-ncbi share/EMBOSS/test/data/prot.m-swiss share/EMBOSS/test/data/prot.nbrf share/EMBOSS/test/data/prot.ncbi share/EMBOSS/test/data/prot.swiss share/EMBOSS/test/data/prot.text share/EMBOSS/test/data/tranalign.pep share/EMBOSS/test/data/tranalign.seq share/EMBOSS/test/data/z83307.seq share/EMBOSS/test/embl/acnum.hit share/EMBOSS/test/embl/acnum.trg share/EMBOSS/test/embl/des.hit share/EMBOSS/test/embl/des.trg share/EMBOSS/test/embl/division.lkp share/EMBOSS/test/embl/entrynam.idx share/EMBOSS/test/embl/est.dat share/EMBOSS/test/embl/fun.dat share/EMBOSS/test/embl/hum1.dat share/EMBOSS/test/embl/inv.dat share/EMBOSS/test/embl/keyword.hit share/EMBOSS/test/embl/keyword.trg share/EMBOSS/test/embl/pln.dat share/EMBOSS/test/embl/pro.dat share/EMBOSS/test/embl/rod.dat share/EMBOSS/test/embl/seqvn.hit share/EMBOSS/test/embl/seqvn.trg share/EMBOSS/test/embl/sts.dat share/EMBOSS/test/embl/taxon.hit share/EMBOSS/test/embl/taxon.trg share/EMBOSS/test/embl/vrl.dat share/EMBOSS/test/embl/vrt.dat share/EMBOSS/test/genbank/acnum.hit share/EMBOSS/test/genbank/acnum.trg share/EMBOSS/test/genbank/division.lkp share/EMBOSS/test/genbank/entrynam.idx share/EMBOSS/test/genbank/seqvn.hit share/EMBOSS/test/genbank/seqvn.trg share/EMBOSS/test/genbank/des.hit share/EMBOSS/test/genbank/des.trg share/EMBOSS/test/genbank/keyword.hit share/EMBOSS/test/genbank/keyword.trg share/EMBOSS/test/genbank/taxon.hit share/EMBOSS/test/genbank/taxon.trg share/EMBOSS/test/genbank/gbbct1.seq share/EMBOSS/test/genbank/gbest1.seq share/EMBOSS/test/genbank/gbinv1.seq share/EMBOSS/test/genbank/gbpln1.seq share/EMBOSS/test/genbank/gbpln2.seq share/EMBOSS/test/genbank/gbpri1.seq share/EMBOSS/test/genbank/gbrod1.seq share/EMBOSS/test/genbank/gbsts1.seq share/EMBOSS/test/genbank/gbvrl1.seq share/EMBOSS/test/genbank/gbvrt.seq share/EMBOSS/test/gb/acnum.hit share/EMBOSS/test/gb/acnum.trg share/EMBOSS/test/gb/division.lkp share/EMBOSS/test/gb/entrynam.idx share/EMBOSS/test/gb/seqvn.hit share/EMBOSS/test/gb/seqvn.trg share/EMBOSS/test/gb/des.hit share/EMBOSS/test/gb/des.trg share/EMBOSS/test/gb/keyword.hit share/EMBOSS/test/gb/keyword.trg share/EMBOSS/test/gb/taxon.hit share/EMBOSS/test/gb/taxon.trg share/EMBOSS/test/gb/ba.ref share/EMBOSS/test/gb/ba.seq share/EMBOSS/test/gb/htg.ref share/EMBOSS/test/gb/htg.seq share/EMBOSS/test/pir/acnum.hit share/EMBOSS/test/pir/acnum.trg share/EMBOSS/test/pir/des.hit share/EMBOSS/test/pir/des.trg share/EMBOSS/test/pir/division.lkp share/EMBOSS/test/pir/entrynam.idx share/EMBOSS/test/pir/keyword.hit share/EMBOSS/test/pir/keyword.trg share/EMBOSS/test/pir/taxon.hit share/EMBOSS/test/pir/taxon.trg share/EMBOSS/test/pir/pir1.header share/EMBOSS/test/pir/pir1.names share/EMBOSS/test/pir/pir1.numbers share/EMBOSS/test/pir/pir1.offset share/EMBOSS/test/pir/pir1.ref share/EMBOSS/test/pir/pir1.seq share/EMBOSS/test/pir/pir2.header share/EMBOSS/test/pir/pir2.names share/EMBOSS/test/pir/pir2.numbers share/EMBOSS/test/pir/pir2.offset share/EMBOSS/test/pir/pir2.ref share/EMBOSS/test/pir/pir2.seq share/EMBOSS/test/pir/pir3.header share/EMBOSS/test/pir/pir3.names share/EMBOSS/test/pir/pir3.numbers share/EMBOSS/test/pir/pir3.offset share/EMBOSS/test/pir/pir3.ref share/EMBOSS/test/pir/pir3.seq share/EMBOSS/test/pir/pir4.header share/EMBOSS/test/pir/pir4.names share/EMBOSS/test/pir/pir4.numbers share/EMBOSS/test/pir/pir4.offset share/EMBOSS/test/pir/pir4.ref share/EMBOSS/test/pir/pir4.seq share/EMBOSS/test/swiss/acnum.hit share/EMBOSS/test/swiss/acnum.trg share/EMBOSS/test/swiss/division.lkp share/EMBOSS/test/swiss/entrynam.idx share/EMBOSS/test/swiss/seq.dat share/EMBOSS/test/swiss/seqvn.hit share/EMBOSS/test/swiss/seqvn.trg share/EMBOSS/test/swiss/des.hit share/EMBOSS/test/swiss/des.trg share/EMBOSS/test/swiss/keyword.hit share/EMBOSS/test/swiss/keyword.trg share/EMBOSS/test/swiss/taxon.hit share/EMBOSS/test/swiss/taxon.trg share/EMBOSS/test/swnew/acnum.hit share/EMBOSS/test/swnew/acnum.trg share/EMBOSS/test/swnew/division.lkp share/EMBOSS/test/swnew/entrynam.idx share/EMBOSS/test/swnew/new_seq.dat share/EMBOSS/test/swnew/upd_ann.dat share/EMBOSS/test/swnew/upd_seq.dat share/EMBOSS/test/swnew/seqvn.hit share/EMBOSS/test/swnew/seqvn.trg share/EMBOSS/test/swnew/des.hit share/EMBOSS/test/swnew/des.trg share/EMBOSS/test/swnew/keyword.hit share/EMBOSS/test/swnew/keyword.trg share/EMBOSS/test/swnew/taxon.hit share/EMBOSS/test/swnew/taxon.trg share/EMBOSS/test/wormpep/acnum.hit share/EMBOSS/test/wormpep/acnum.trg share/EMBOSS/test/wormpep/division.lkp share/EMBOSS/test/wormpep/entrynam.idx share/EMBOSS/test/wormpep/wormpep share/EMBOSS/test/wormpep/des.hit share/EMBOSS/test/wormpep/des.trg share/doc/EMBOSS/manuals/EMBOSS-FreeBSD-HOWTO.txt share/doc/EMBOSS/manuals/admin.aux share/doc/EMBOSS/manuals/admin.dvi share/doc/EMBOSS/manuals/admin.log share/doc/EMBOSS/manuals/admin.pdf share/doc/EMBOSS/manuals/admin.ps share/doc/EMBOSS/manuals/admin.sty share/doc/EMBOSS/manuals/admin.tex share/doc/EMBOSS/manuals/admin.toc share/doc/EMBOSS/manuals/adminguide.tar.gz share/doc/EMBOSS/manuals/emboss_qg.pdf share/doc/EMBOSS/manuals/emboss_qg.ps share/doc/EMBOSS/manuals/program.ps.gz share/doc/EMBOSS/programs/html/abiview.html share/doc/EMBOSS/programs/html/abiview0.gif share/doc/EMBOSS/programs/html/ajtest.html share/doc/EMBOSS/programs/html/alignment_consensus_group.html share/doc/EMBOSS/programs/html/alignment_differences_group.html share/doc/EMBOSS/programs/html/alignment_dot_plots_group.html share/doc/EMBOSS/programs/html/alignment_global_group.html share/doc/EMBOSS/programs/html/alignment_local_group.html share/doc/EMBOSS/programs/html/alignment_multiple_group.html share/doc/EMBOSS/programs/html/antigenic.html share/doc/EMBOSS/programs/html/backtranseq.html share/doc/EMBOSS/programs/html/banana.html share/doc/EMBOSS/programs/html/banana0.gif share/doc/EMBOSS/programs/html/biosed.html share/doc/EMBOSS/programs/html/btwisted.html share/doc/EMBOSS/programs/html/cai.html share/doc/EMBOSS/programs/html/chaos.html share/doc/EMBOSS/programs/html/chaos0.gif share/doc/EMBOSS/programs/html/charge.html share/doc/EMBOSS/programs/html/checktrans.html share/doc/EMBOSS/programs/html/chips.html share/doc/EMBOSS/programs/html/cirdna.html share/doc/EMBOSS/programs/html/clique.html share/doc/EMBOSS/programs/html/codcmp.html share/doc/EMBOSS/programs/html/coderet.html share/doc/EMBOSS/programs/html/compseq.html share/doc/EMBOSS/programs/html/cons.html share/doc/EMBOSS/programs/html/consense.html share/doc/EMBOSS/programs/html/contacts.html share/doc/EMBOSS/programs/html/contml.html share/doc/EMBOSS/programs/html/contrast.html share/doc/EMBOSS/programs/html/cpgplot.html share/doc/EMBOSS/programs/html/cpgplot0.gif share/doc/EMBOSS/programs/html/cpgreport.html share/doc/EMBOSS/programs/html/cusp.html share/doc/EMBOSS/programs/html/cutgextract.html share/doc/EMBOSS/programs/html/cutseq.html share/doc/EMBOSS/programs/html/dan.html share/doc/EMBOSS/programs/html/dbiblast.html share/doc/EMBOSS/programs/html/dbifasta.html share/doc/EMBOSS/programs/html/dbiflat.html share/doc/EMBOSS/programs/html/dbigcg.html share/doc/EMBOSS/programs/html/degapseq.html share/doc/EMBOSS/programs/html/descseq.html share/doc/EMBOSS/programs/html/diffseq.html share/doc/EMBOSS/programs/html/digest.html share/doc/EMBOSS/programs/html/display_group.html share/doc/EMBOSS/programs/html/distmat.html share/doc/EMBOSS/programs/html/dnacomp.html share/doc/EMBOSS/programs/html/dnadist.html share/doc/EMBOSS/programs/html/dnainvar.html share/doc/EMBOSS/programs/html/dnaml.html share/doc/EMBOSS/programs/html/dnamlk.html share/doc/EMBOSS/programs/html/dnapars.html share/doc/EMBOSS/programs/html/dnapenny.html share/doc/EMBOSS/programs/html/dollop.html share/doc/EMBOSS/programs/html/dolpenny.html share/doc/EMBOSS/programs/html/domainer.html share/doc/EMBOSS/programs/html/dotmatcher.html share/doc/EMBOSS/programs/html/dotmatcher0.gif share/doc/EMBOSS/programs/html/dotpath.html share/doc/EMBOSS/programs/html/dottup.html share/doc/EMBOSS/programs/html/dottup0.gif share/doc/EMBOSS/programs/html/dreg.html share/doc/EMBOSS/programs/html/eclique.html share/doc/EMBOSS/programs/html/econsense.html share/doc/EMBOSS/programs/html/econtml.html share/doc/EMBOSS/programs/html/econtrast.html share/doc/EMBOSS/programs/html/edit_group.html share/doc/EMBOSS/programs/html/ednacomp.html share/doc/EMBOSS/programs/html/ednadist.html share/doc/EMBOSS/programs/html/ednainvar.html share/doc/EMBOSS/programs/html/ednaml.html share/doc/EMBOSS/programs/html/ednamlk.html share/doc/EMBOSS/programs/html/ednapars.html share/doc/EMBOSS/programs/html/ednapenny.html share/doc/EMBOSS/programs/html/edollop.html share/doc/EMBOSS/programs/html/edolpenny.html share/doc/EMBOSS/programs/html/efactor.html share/doc/EMBOSS/programs/html/efitch.html share/doc/EMBOSS/programs/html/egendist.html share/doc/EMBOSS/programs/html/einverted.html share/doc/EMBOSS/programs/html/ekitsch.html share/doc/EMBOSS/programs/html/emboss_icon.gif share/doc/EMBOSS/programs/html/embossdata.html share/doc/EMBOSS/programs/html/embossversion.html share/doc/EMBOSS/programs/html/emix.html share/doc/EMBOSS/programs/html/emma.html share/doc/EMBOSS/programs/html/emowse.html share/doc/EMBOSS/programs/html/eneighbor.html share/doc/EMBOSS/programs/html/entret.html share/doc/EMBOSS/programs/html/enzyme_kinetics_group.html share/doc/EMBOSS/programs/html/epenny.html share/doc/EMBOSS/programs/html/eprotdist.html share/doc/EMBOSS/programs/html/eprotpars.html share/doc/EMBOSS/programs/html/equicktandem.html share/doc/EMBOSS/programs/html/erestml.html share/doc/EMBOSS/programs/html/eseqboot.html share/doc/EMBOSS/programs/html/est2genome.html share/doc/EMBOSS/programs/html/etandem.html share/doc/EMBOSS/programs/html/extractfeat.html share/doc/EMBOSS/programs/html/extractseq.html share/doc/EMBOSS/programs/html/factor.html share/doc/EMBOSS/programs/html/feature_tables_group.html share/doc/EMBOSS/programs/html/findkm.html share/doc/EMBOSS/programs/html/findkm0.gif share/doc/EMBOSS/programs/html/fitch.html share/doc/EMBOSS/programs/html/freak.html share/doc/EMBOSS/programs/html/fuzznuc.html share/doc/EMBOSS/programs/html/fuzzpro.html share/doc/EMBOSS/programs/html/fuzztran.html share/doc/EMBOSS/programs/html/garnier.html share/doc/EMBOSS/programs/html/geecee.html share/doc/EMBOSS/programs/html/gendist.html share/doc/EMBOSS/programs/html/getorf.html share/doc/EMBOSS/programs/html/groups.html share/doc/EMBOSS/programs/html/helixturnhelix.html share/doc/EMBOSS/programs/html/hmoment.html share/doc/EMBOSS/programs/html/iep.html share/doc/EMBOSS/programs/html/index.html share/doc/EMBOSS/programs/html/infoalign.html share/doc/EMBOSS/programs/html/information_group.html share/doc/EMBOSS/programs/html/infoseq.html share/doc/EMBOSS/programs/html/isochore.html share/doc/EMBOSS/programs/html/isochore0.gif share/doc/EMBOSS/programs/html/kitsch.html share/doc/EMBOSS/programs/html/lindna.gif share/doc/EMBOSS/programs/html/lindna.html share/doc/EMBOSS/programs/html/listor.html share/doc/EMBOSS/programs/html/marscan.html share/doc/EMBOSS/programs/html/maskfeat.html share/doc/EMBOSS/programs/html/maskseq.html share/doc/EMBOSS/programs/html/matcher.html share/doc/EMBOSS/programs/html/megamerger.html share/doc/EMBOSS/programs/html/menus_group.html share/doc/EMBOSS/programs/html/merger.html share/doc/EMBOSS/programs/html/mix.html share/doc/EMBOSS/programs/html/msbar.html share/doc/EMBOSS/programs/html/mse.html share/doc/EMBOSS/programs/html/mwfilter.html share/doc/EMBOSS/programs/html/needle.html share/doc/EMBOSS/programs/html/neighbor.html share/doc/EMBOSS/programs/html/newcpgreport.html share/doc/EMBOSS/programs/html/newcpgseek.html share/doc/EMBOSS/programs/html/newseq.html share/doc/EMBOSS/programs/html/noreturn.html share/doc/EMBOSS/programs/html/notseq.html share/doc/EMBOSS/programs/html/nrscope.html share/doc/EMBOSS/programs/html/nthseq.html share/doc/EMBOSS/programs/html/nucleic_2d_structure_group.html share/doc/EMBOSS/programs/html/nucleic_codon_usage_group.html share/doc/EMBOSS/programs/html/nucleic_composition_group.html share/doc/EMBOSS/programs/html/nucleic_cpg_islands_group.html share/doc/EMBOSS/programs/html/nucleic_gene_finding_group.html share/doc/EMBOSS/programs/html/nucleic_motifs_group.html share/doc/EMBOSS/programs/html/nucleic_mutation_group.html share/doc/EMBOSS/programs/html/nucleic_primers_group.html share/doc/EMBOSS/programs/html/nucleic_profiles_group.html share/doc/EMBOSS/programs/html/nucleic_repeats_group.html share/doc/EMBOSS/programs/html/nucleic_restriction_group.html share/doc/EMBOSS/programs/html/nucleic_transcription_group.html share/doc/EMBOSS/programs/html/nucleic_translation_group.html share/doc/EMBOSS/programs/html/octanol.html share/doc/EMBOSS/programs/html/octanol0.gif share/doc/EMBOSS/programs/html/oddcomp.html share/doc/EMBOSS/programs/html/palindrome.html share/doc/EMBOSS/programs/html/pasteseq.html share/doc/EMBOSS/programs/html/patmatdb.html share/doc/EMBOSS/programs/html/patmatmotifs.html share/doc/EMBOSS/programs/html/penny.html share/doc/EMBOSS/programs/html/pepcoil.html share/doc/EMBOSS/programs/html/pepinfo.html share/doc/EMBOSS/programs/html/pepinfo1.gif share/doc/EMBOSS/programs/html/pepinfo2.gif share/doc/EMBOSS/programs/html/pepnet.html share/doc/EMBOSS/programs/html/pepnet0.gif share/doc/EMBOSS/programs/html/pepstats.html share/doc/EMBOSS/programs/html/pepwheel.html share/doc/EMBOSS/programs/html/pepwheel0.gif share/doc/EMBOSS/programs/html/pepwindow.html share/doc/EMBOSS/programs/html/pepwindow0.gif share/doc/EMBOSS/programs/html/pepwindowall.html share/doc/EMBOSS/programs/html/pepwindowall0.gif share/doc/EMBOSS/programs/html/phylogeny_group.html share/doc/EMBOSS/programs/html/plotcon.html share/doc/EMBOSS/programs/html/plotorf.html share/doc/EMBOSS/programs/html/plotorf0.gif share/doc/EMBOSS/programs/html/polydot.html share/doc/EMBOSS/programs/html/polydot0.gif share/doc/EMBOSS/programs/html/preg.html share/doc/EMBOSS/programs/html/prettyplot.html share/doc/EMBOSS/programs/html/prettyplot3.gif share/doc/EMBOSS/programs/html/prettyplot4.gif share/doc/EMBOSS/programs/html/prettyseq.html share/doc/EMBOSS/programs/html/primersearch.html share/doc/EMBOSS/programs/html/printsextract.html share/doc/EMBOSS/programs/html/profit.html share/doc/EMBOSS/programs/html/prophecy.html share/doc/EMBOSS/programs/html/prophet.html share/doc/EMBOSS/programs/html/prosextract.html share/doc/EMBOSS/programs/html/protdist.html share/doc/EMBOSS/programs/html/protein_2d_structure_group.html share/doc/EMBOSS/programs/html/protein_3d_structure_group.html share/doc/EMBOSS/programs/html/protein_composition_group.html share/doc/EMBOSS/programs/html/protein_motifs_group.html share/doc/EMBOSS/programs/html/protein_mutation_group.html share/doc/EMBOSS/programs/html/protein_profiles_group.html share/doc/EMBOSS/programs/html/protein_structure_group.html share/doc/EMBOSS/programs/html/pscan.html share/doc/EMBOSS/programs/html/rebaseextract.html share/doc/EMBOSS/programs/html/recode.html share/doc/EMBOSS/programs/html/recoder.html share/doc/EMBOSS/programs/html/redata.html share/doc/EMBOSS/programs/html/remap.html share/doc/EMBOSS/programs/html/restml.html share/doc/EMBOSS/programs/html/restover.html share/doc/EMBOSS/programs/html/restrict.html share/doc/EMBOSS/programs/html/revseq.html share/doc/EMBOSS/programs/html/scopalign.html share/doc/EMBOSS/programs/html/scope.html share/doc/EMBOSS/programs/html/seealso.html share/doc/EMBOSS/programs/html/seqboot.html share/doc/EMBOSS/programs/html/seqmatchall.html share/doc/EMBOSS/programs/html/seqret.html share/doc/EMBOSS/programs/html/seqretall.html share/doc/EMBOSS/programs/html/seqretallfeat.html share/doc/EMBOSS/programs/html/seqretfeat.html share/doc/EMBOSS/programs/html/seqretset.html share/doc/EMBOSS/programs/html/seqretsplit.html share/doc/EMBOSS/programs/html/showalign.html share/doc/EMBOSS/programs/html/showdb.html share/doc/EMBOSS/programs/html/showfeat.html share/doc/EMBOSS/programs/html/showorf.html share/doc/EMBOSS/programs/html/showseq.html share/doc/EMBOSS/programs/html/shuffleseq.html share/doc/EMBOSS/programs/html/sigcleave.html share/doc/EMBOSS/programs/html/siggen.html share/doc/EMBOSS/programs/html/sigscan.html share/doc/EMBOSS/programs/html/silent.html share/doc/EMBOSS/programs/html/splitter.html share/doc/EMBOSS/programs/html/stamps.html share/doc/EMBOSS/programs/html/stretcher.html share/doc/EMBOSS/programs/html/stssearch.html share/doc/EMBOSS/programs/html/supermatcher.html share/doc/EMBOSS/programs/html/swissparse.html share/doc/EMBOSS/programs/html/syco.html share/doc/EMBOSS/programs/html/syco0.gif share/doc/EMBOSS/programs/html/syco1.gif share/doc/EMBOSS/programs/html/test_group.html share/doc/EMBOSS/programs/html/textsearch.html share/doc/EMBOSS/programs/html/tfextract.html share/doc/EMBOSS/programs/html/tfm.html share/doc/EMBOSS/programs/html/tfscan.html share/doc/EMBOSS/programs/html/tmap.html share/doc/EMBOSS/programs/html/tmap0.gif share/doc/EMBOSS/programs/html/topo.gif share/doc/EMBOSS/programs/html/topo.html share/doc/EMBOSS/programs/html/transeq.html share/doc/EMBOSS/programs/html/trimest.html share/doc/EMBOSS/programs/html/trimseq.html share/doc/EMBOSS/programs/html/utils_database_creation_group.html share/doc/EMBOSS/programs/html/utils_database_indexing_group.html share/doc/EMBOSS/programs/html/utils_misc_group.html share/doc/EMBOSS/programs/html/vectorstrip.html share/doc/EMBOSS/programs/html/water.html share/doc/EMBOSS/programs/html/wobble.html share/doc/EMBOSS/programs/html/wobble0.gif share/doc/EMBOSS/programs/html/wordcount.html share/doc/EMBOSS/programs/html/wordmatch.html share/doc/EMBOSS/programs/html/wossname.html share/doc/EMBOSS/programs/html/pdbtosp.html share/doc/EMBOSS/programs/html/psiblasts.html share/doc/EMBOSS/programs/html/scopparse.html share/doc/EMBOSS/programs/html/seqnr.html share/doc/EMBOSS/programs/html/seqsort.html share/doc/EMBOSS/programs/html/tranalign.html share/doc/EMBOSS/programs/html/union.html share/doc/EMBOSS/programs/html/whichdb.html share/doc/EMBOSS/programs/html/yank.html share/doc/EMBOSS/programs/html/alignwrap.html share/doc/EMBOSS/programs/html/dichet.html share/doc/EMBOSS/programs/html/eprimer3.html share/doc/EMBOSS/programs/html/interface.html share/doc/EMBOSS/programs/html/jembossctl.html share/doc/EMBOSS/programs/text/SITE-DIRECTED.txt share/doc/EMBOSS/programs/text/abiview.txt share/doc/EMBOSS/programs/text/ajtest.txt share/doc/EMBOSS/programs/text/antigenic.txt share/doc/EMBOSS/programs/text/backtranseq.txt share/doc/EMBOSS/programs/text/banana.txt share/doc/EMBOSS/programs/text/biosed.txt share/doc/EMBOSS/programs/text/btwisted.txt share/doc/EMBOSS/programs/text/cai.txt share/doc/EMBOSS/programs/text/chaos.txt share/doc/EMBOSS/programs/text/charge.txt share/doc/EMBOSS/programs/text/checktrans.txt share/doc/EMBOSS/programs/text/chips.txt share/doc/EMBOSS/programs/text/cirdna.txt share/doc/EMBOSS/programs/text/clique.txt share/doc/EMBOSS/programs/text/codcmp.txt share/doc/EMBOSS/programs/text/coderet.txt share/doc/EMBOSS/programs/text/complex.txt share/doc/EMBOSS/programs/text/compseq.txt share/doc/EMBOSS/programs/text/cons.txt share/doc/EMBOSS/programs/text/consense.txt share/doc/EMBOSS/programs/text/contacts.txt share/doc/EMBOSS/programs/text/contml.txt share/doc/EMBOSS/programs/text/contrast.txt share/doc/EMBOSS/programs/text/cpgplot.txt share/doc/EMBOSS/programs/text/cpgreport.txt share/doc/EMBOSS/programs/text/cusp.txt share/doc/EMBOSS/programs/text/cutgextract.txt share/doc/EMBOSS/programs/text/cutseq.txt share/doc/EMBOSS/programs/text/dan.txt share/doc/EMBOSS/programs/text/dbiblast.txt share/doc/EMBOSS/programs/text/dbifasta.txt share/doc/EMBOSS/programs/text/dbiflat.txt share/doc/EMBOSS/programs/text/dbigcg.txt share/doc/EMBOSS/programs/text/degapseq.txt share/doc/EMBOSS/programs/text/descseq.txt share/doc/EMBOSS/programs/text/diffseq.txt share/doc/EMBOSS/programs/text/digest.txt share/doc/EMBOSS/programs/text/distmat.txt share/doc/EMBOSS/programs/text/dnacomp.txt share/doc/EMBOSS/programs/text/dnadist.txt share/doc/EMBOSS/programs/text/dnainvar.txt share/doc/EMBOSS/programs/text/dnaml.txt share/doc/EMBOSS/programs/text/dnamlk.txt share/doc/EMBOSS/programs/text/dnapars.txt share/doc/EMBOSS/programs/text/dnapenny.txt share/doc/EMBOSS/programs/text/dollop.txt share/doc/EMBOSS/programs/text/dolpenny.txt share/doc/EMBOSS/programs/text/domainer.txt share/doc/EMBOSS/programs/text/dotmatcher.txt share/doc/EMBOSS/programs/text/dotpath.txt share/doc/EMBOSS/programs/text/dottup.txt share/doc/EMBOSS/programs/text/dreg.txt share/doc/EMBOSS/programs/text/eclique.txt share/doc/EMBOSS/programs/text/econsense.txt share/doc/EMBOSS/programs/text/econtml.txt share/doc/EMBOSS/programs/text/econtrast.txt share/doc/EMBOSS/programs/text/ednacomp.txt share/doc/EMBOSS/programs/text/ednadist.txt share/doc/EMBOSS/programs/text/ednainvar.txt share/doc/EMBOSS/programs/text/ednaml.txt share/doc/EMBOSS/programs/text/ednamlk.txt share/doc/EMBOSS/programs/text/ednapars.txt share/doc/EMBOSS/programs/text/ednapenny.txt share/doc/EMBOSS/programs/text/edollop.txt share/doc/EMBOSS/programs/text/edolpenny.txt share/doc/EMBOSS/programs/text/efactor.txt share/doc/EMBOSS/programs/text/efitch.txt share/doc/EMBOSS/programs/text/egendist.txt share/doc/EMBOSS/programs/text/einverted.txt share/doc/EMBOSS/programs/text/ekitsch.txt share/doc/EMBOSS/programs/text/embossdata.txt share/doc/EMBOSS/programs/text/embossversion.txt share/doc/EMBOSS/programs/text/emix.txt share/doc/EMBOSS/programs/text/emma.txt share/doc/EMBOSS/programs/text/emowse.txt share/doc/EMBOSS/programs/text/eneighbor.txt share/doc/EMBOSS/programs/text/entret.txt share/doc/EMBOSS/programs/text/epenny.txt share/doc/EMBOSS/programs/text/eprotdist.txt share/doc/EMBOSS/programs/text/eprotpars.txt share/doc/EMBOSS/programs/text/equicktandem.txt share/doc/EMBOSS/programs/text/erestml.txt share/doc/EMBOSS/programs/text/eseqboot.txt share/doc/EMBOSS/programs/text/est2genome.txt share/doc/EMBOSS/programs/text/etandem.txt share/doc/EMBOSS/programs/text/extractfeat.txt share/doc/EMBOSS/programs/text/extractseq.txt share/doc/EMBOSS/programs/text/factor.txt share/doc/EMBOSS/programs/text/findkm.txt share/doc/EMBOSS/programs/text/fitch.txt share/doc/EMBOSS/programs/text/freak.txt share/doc/EMBOSS/programs/text/fuzznuc.txt share/doc/EMBOSS/programs/text/fuzzpro.txt share/doc/EMBOSS/programs/text/fuzztran.txt share/doc/EMBOSS/programs/text/garnier.txt share/doc/EMBOSS/programs/text/geecee.txt share/doc/EMBOSS/programs/text/gendist.txt share/doc/EMBOSS/programs/text/getorf.txt share/doc/EMBOSS/programs/text/helixturnhelix.txt share/doc/EMBOSS/programs/text/hmoment.txt share/doc/EMBOSS/programs/text/iep.txt share/doc/EMBOSS/programs/text/infoalign.txt share/doc/EMBOSS/programs/text/infoseq.txt share/doc/EMBOSS/programs/text/isochore.txt share/doc/EMBOSS/programs/text/kitsch.txt share/doc/EMBOSS/programs/text/lindna.txt share/doc/EMBOSS/programs/text/listor.txt share/doc/EMBOSS/programs/text/marscan.txt share/doc/EMBOSS/programs/text/maskfeat.txt share/doc/EMBOSS/programs/text/maskseq.txt share/doc/EMBOSS/programs/text/matcher.txt share/doc/EMBOSS/programs/text/megamerger.txt share/doc/EMBOSS/programs/text/merger.txt share/doc/EMBOSS/programs/text/mix.txt share/doc/EMBOSS/programs/text/msbar.txt share/doc/EMBOSS/programs/text/mse.txt share/doc/EMBOSS/programs/text/mwfilter.txt share/doc/EMBOSS/programs/text/needle.txt share/doc/EMBOSS/programs/text/neighbor.txt share/doc/EMBOSS/programs/text/newcpgreport.txt share/doc/EMBOSS/programs/text/newcpgseek.txt share/doc/EMBOSS/programs/text/newseq.txt share/doc/EMBOSS/programs/text/noreturn.txt share/doc/EMBOSS/programs/text/notseq.txt share/doc/EMBOSS/programs/text/nrscope.txt share/doc/EMBOSS/programs/text/nthseq.txt share/doc/EMBOSS/programs/text/octanol.txt share/doc/EMBOSS/programs/text/oddcomp.txt share/doc/EMBOSS/programs/text/palindrome.txt share/doc/EMBOSS/programs/text/pasteseq.txt share/doc/EMBOSS/programs/text/patmatdb.txt share/doc/EMBOSS/programs/text/patmatmotifs.txt share/doc/EMBOSS/programs/text/penny.txt share/doc/EMBOSS/programs/text/pepcoil.txt share/doc/EMBOSS/programs/text/pepinfo.txt share/doc/EMBOSS/programs/text/pepnet.txt share/doc/EMBOSS/programs/text/pepstats.txt share/doc/EMBOSS/programs/text/pepwheel.txt share/doc/EMBOSS/programs/text/pepwindow.txt share/doc/EMBOSS/programs/text/pepwindowall.txt share/doc/EMBOSS/programs/text/plotcon.txt share/doc/EMBOSS/programs/text/plotorf.txt share/doc/EMBOSS/programs/text/polydot.txt share/doc/EMBOSS/programs/text/preg.txt share/doc/EMBOSS/programs/text/prettyplot.txt share/doc/EMBOSS/programs/text/prettyseq.txt share/doc/EMBOSS/programs/text/primersearch.txt share/doc/EMBOSS/programs/text/printsextract.txt share/doc/EMBOSS/programs/text/profit.txt share/doc/EMBOSS/programs/text/prophecy.txt share/doc/EMBOSS/programs/text/prophet.txt share/doc/EMBOSS/programs/text/prosextract.txt share/doc/EMBOSS/programs/text/protdist.txt share/doc/EMBOSS/programs/text/pscan.txt share/doc/EMBOSS/programs/text/rebaseextract.txt share/doc/EMBOSS/programs/text/recode.txt share/doc/EMBOSS/programs/text/recoder.txt share/doc/EMBOSS/programs/text/redata.txt share/doc/EMBOSS/programs/text/remap.txt share/doc/EMBOSS/programs/text/restml.txt share/doc/EMBOSS/programs/text/restover.txt share/doc/EMBOSS/programs/text/restrict.txt share/doc/EMBOSS/programs/text/revseq.txt share/doc/EMBOSS/programs/text/scopalign.txt share/doc/EMBOSS/programs/text/scope.txt share/doc/EMBOSS/programs/text/seealso.txt share/doc/EMBOSS/programs/text/seqboot.txt share/doc/EMBOSS/programs/text/seqmatchall.txt share/doc/EMBOSS/programs/text/seqret.txt share/doc/EMBOSS/programs/text/seqretall.txt share/doc/EMBOSS/programs/text/seqretallfeat.txt share/doc/EMBOSS/programs/text/seqretfeat.txt share/doc/EMBOSS/programs/text/seqretset.txt share/doc/EMBOSS/programs/text/seqretsplit.txt share/doc/EMBOSS/programs/text/showalign.txt share/doc/EMBOSS/programs/text/showdb.txt share/doc/EMBOSS/programs/text/showfeat.txt share/doc/EMBOSS/programs/text/showorf.txt share/doc/EMBOSS/programs/text/showseq.txt share/doc/EMBOSS/programs/text/shuffleseq.txt share/doc/EMBOSS/programs/text/sigcleave.txt share/doc/EMBOSS/programs/text/siggen.txt share/doc/EMBOSS/programs/text/sigscan.txt share/doc/EMBOSS/programs/text/silent.txt share/doc/EMBOSS/programs/text/splitter.txt share/doc/EMBOSS/programs/text/stamps.txt share/doc/EMBOSS/programs/text/stretcher.txt share/doc/EMBOSS/programs/text/stssearch.txt share/doc/EMBOSS/programs/text/supermatcher.txt share/doc/EMBOSS/programs/text/swissparse.txt share/doc/EMBOSS/programs/text/syco.txt share/doc/EMBOSS/programs/text/textsearch.txt share/doc/EMBOSS/programs/text/tfextract.txt share/doc/EMBOSS/programs/text/tfm.txt share/doc/EMBOSS/programs/text/tfscan.txt share/doc/EMBOSS/programs/text/tmap.txt share/doc/EMBOSS/programs/text/topo.txt share/doc/EMBOSS/programs/text/transeq.txt share/doc/EMBOSS/programs/text/trimest.txt share/doc/EMBOSS/programs/text/trimseq.txt share/doc/EMBOSS/programs/text/vectorstrip.txt share/doc/EMBOSS/programs/text/water.txt share/doc/EMBOSS/programs/text/wobble.txt share/doc/EMBOSS/programs/text/wordcount.txt share/doc/EMBOSS/programs/text/wordmatch.txt share/doc/EMBOSS/programs/text/wossname.txt share/doc/EMBOSS/programs/text/jembossctl.txt share/doc/EMBOSS/programs/text/pdbtosp.txt share/doc/EMBOSS/programs/text/psiblasts.txt share/doc/EMBOSS/programs/text/scopparse.txt share/doc/EMBOSS/programs/text/seqnr.txt share/doc/EMBOSS/programs/text/seqsort.txt share/doc/EMBOSS/programs/text/tranalign.txt share/doc/EMBOSS/programs/text/union.txt share/doc/EMBOSS/programs/text/whichdb.txt share/doc/EMBOSS/programs/text/yank.txt share/doc/EMBOSS/programs/text/alignwrap.txt share/doc/EMBOSS/programs/text/dichet.txt share/doc/EMBOSS/programs/text/eprimer3.txt share/doc/EMBOSS/programs/text/interface.txt share/doc/EMBOSS/tutorials/biblio.bib share/doc/EMBOSS/tutorials/dottup.ps.gz share/doc/EMBOSS/tutorials/emboss-gcg.ppt share/doc/EMBOSS/tutorials/emboss-interfaces.ppt share/doc/EMBOSS/tutorials/emboss-talk.ppt share/doc/EMBOSS/tutorials/emboss_tutorial.ps.gz share/doc/EMBOSS/tutorials/emboss_tutorial.tex share/doc/EMBOSS/tutorials/pepinfo1.ps.gz share/doc/EMBOSS/tutorials/pepinfo2.ps.gz share/doc/EMBOSS/tutorials/plotorf.ps.gz share/doc/EMBOSS/tutorials/tmap.ps.gz @dirrm share/doc/EMBOSS/tutorials @dirrm share/doc/EMBOSS/programs/text @dirrm share/doc/EMBOSS/programs/html @dirrm share/doc/EMBOSS/programs @dirrm share/doc/EMBOSS/manuals @dirrm share/doc/EMBOSS @dirrm share/EMBOSS/test/wormpep @dirrm share/EMBOSS/test/swnew @dirrm share/EMBOSS/test/swiss @dirrm share/EMBOSS/test/pir @dirrm share/EMBOSS/test/genbank @dirrm share/EMBOSS/test/gb @dirrm share/EMBOSS/test/embl @dirrm share/EMBOSS/test/data @dirrm share/EMBOSS/test @dirrm share/EMBOSS/jemboss/utils @dirrm share/EMBOSS/jemboss/resources @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/soap @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/server @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/programs @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/parser @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/form @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree @dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui @dirrm share/EMBOSS/jemboss/org/emboss/jemboss @dirrm share/EMBOSS/jemboss/org/emboss @dirrm share/EMBOSS/jemboss/org @dirrm share/EMBOSS/jemboss/lib @dirrm share/EMBOSS/jemboss/images @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/soap @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/programs @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/parser @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui @dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss @dirrm share/EMBOSS/jemboss/api/org/emboss @dirrm share/EMBOSS/jemboss/api/org @dirrm share/EMBOSS/jemboss/api @dirrm share/EMBOSS/jemboss @dirrm share/EMBOSS/data/REBASE @dirrm share/EMBOSS/data/PROSITE @dirrm share/EMBOSS/data/PRINTS @dirrm share/EMBOSS/data/CODONS @dirrm share/EMBOSS/data @dirrm share/EMBOSS/acd @dirrm share/EMBOSS