share/java/classes/biojava.jar
share/java/classes/xml.jar
share/java/biojava-1.01/LICENSE
share/java/biojava-1.01/README
share/java/biojava-1.01/demos/acedb/AceTreeView.java
share/java/biojava-1.01/demos/acedb/ServeAceAsCorba.java
share/java/biojava-1.01/demos/acedb/AceClient.java
share/java/biojava-1.01/demos/acedb/SequenceFetch.java
share/java/biojava-1.01/demos/gff/GFFFilter.java
share/java/biojava-1.01/demos/gff/EmblToGffFasta.java
share/java/biojava-1.01/demos/gff/GFFToFeatures.java
share/java/biojava-1.01/demos/gff/varC4-2.gff
share/java/biojava-1.01/demos/gff/AL121903.embl
share/java/biojava-1.01/demos/seq/db/AddFilesToIndex.java
share/java/biojava-1.01/demos/seq/db/CreateIndex.java
share/java/biojava-1.01/demos/seq/db/FetchSequence.java
share/java/biojava-1.01/demos/seq/db/ListSeqsInIndex.java
share/java/biojava-1.01/demos/seq/TestGenbank.java
share/java/biojava-1.01/demos/seq/AL121903.genbank
share/java/biojava-1.01/demos/seq/TestTranslation.java
share/java/biojava-1.01/demos/seq/TestEmbl.java
share/java/biojava-1.01/demos/seq/AL121903.embl
share/java/biojava-1.01/demos/dist/TestDistribution.java
share/java/biojava-1.01/demos/dp/PairwiseAlignment.java
share/java/biojava-1.01/demos/dp/fake.fasta
share/java/biojava-1.01/demos/dp/ViterbiAlign.java
share/java/biojava-1.01/demos/dp/package.html
share/java/biojava-1.01/demos/dp/SearchProfile.java
share/java/biojava-1.01/demos/dp/fakepromoter.xml
share/java/biojava-1.01/demos/dp/Dice.java
share/java/biojava-1.01/demos/BioCorba/CorbaDBServer.java
share/java/biojava-1.01/demos/BioCorba/ChrI.prom.fasta
share/java/biojava-1.01/demos/BioCorba/CorbaDBClient.java
share/java/biojava-1.01/demos/files/AL121903.embl
share/java/biojava-1.01/demos/files/test.hmm
share/java/biojava-1.01/demos/files/out.gff
share/java/biojava-1.01/demos/files/AL121903.genbank
share/java/biojava-1.01/demos/files/ChrI.prom.fasta
share/java/biojava-1.01/demos/files/fakepromoter.xml
share/java/biojava-1.01/demos/files/scoptest.fa
share/java/biojava-1.01/demos/files/varC4-2.gff
share/java/biojava-1.01/demos/files/varC4-2.dna
share/java/biojava-1.01/demos/files/fake.fasta
share/java/biojava-1.01/demos/symbol/TestAmbiguity.java
share/java/biojava-1.01/demos/symbol/TestSimpleAlignment.java
share/java/biojava-1.01/demos/symbol/Tools.java
share/java/biojava-1.01/demos/symbol/TestOrderNSymbolList.java
share/java/biojava-1.01/demos/symbol/TestGappedSymbolList.java
share/java/biojava-1.01/demos/symbol/TestWindowedSymbolList.java
share/java/biojava-1.01/demos/seqviewer/test.fa
share/java/biojava-1.01/demos/seqviewer/EmblViewer.java
share/java/biojava-1.01/demos/seqviewer/TestSequencePanel.java
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/UnknownHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/_Unknown_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/Unknown.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/_Unknown_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/_UnknownImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/_UnknownStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/UnknownHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/SocketDriver.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/SocketResultSet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticStringValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticAceNode.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticAceObject.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticAceSet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticDateValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticFloatValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticIntValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticModelInclude.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticModelNode.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticModelReference.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticModelType.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticReference.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/AceAnnotation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/AceSequence.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/AceSequenceDB.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceElement.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceNode.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceObject.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceSet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Connection.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Database.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/DateValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Driver.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/FloatValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/IntValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/ModelInclude.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/ModelNode.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/ModelReference.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/ModelType.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Reference.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/StringValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Ace.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AcePerlParser.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceURL.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceUtils.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Handler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceURLException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceError.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/UnableToProcess.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_AnonymousSeq_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeq_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDB_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIterator_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_Seq_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqDB_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeature_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIterator_Operations.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/AnonymousSeq.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeq.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqDB.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqIterator.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/Seq.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqDB.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeature.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureIterator.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_AnonymousSeq_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_AnonymousSeqImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_AnonymousSeqStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeq_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDB_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDBImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDBStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIterator_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIteratorImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIteratorStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_Seq_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqDB_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqDBImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqDBStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeature_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIterator_Tie.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIteratorImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIteratorStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqImplBase.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqStub.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/AnonymousSeqHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/AnonymousSeqHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/EndOfStreamHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/EndOfStreamHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSetHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSetHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSetListHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSetListHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/OutOfRangeHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/OutOfRangeHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/primaryidListHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/primaryidListHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqDBHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqDBHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqIteratorHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqIteratorHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/RequestTooLargeHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/RequestTooLargeHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqDBHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqDBHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureIteratorHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureIteratorHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureListHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureListHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqType.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqTypeHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqTypeHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/stringListHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/stringListHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/UnableToProcessHelper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/UnableToProcessHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/EndOfStream.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/OutOfRange.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/RequestTooLarge.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/IgnoreRecordException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFDocumentHandler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecord.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFEntrySet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.AbortErrorHandler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.SkipRecordErrorHandler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFFilterer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFParser.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.AcceptAll.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.FeatureFilter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.SequenceFilter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.SourceFilter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFWriter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/SequencesAsGFF.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/SimpleGFFRecord.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/Meme.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelVetoException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DotState.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DPMatrix.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/EmissionState.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/MarkovModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelInState.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/State.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/StatePath.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/StoppingCriteria.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/Trainable.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TrainingAlgorithm.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TransitionListener.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TransitionTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/WeightMatrix.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DP.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/AbstractTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/BaumWelchSampler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/BaumWelchTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DP.ReverseIterator.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DPFactory.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/MagicalState.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelChangeEvent.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelView.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelView.ViewTransitionTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/PairDPMatrix.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/PairwiseDP.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ProfileHMM.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleDotState.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleEmissionState.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleMarkovModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleModelInState.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/Transition.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleModelTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleStatePath.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleTransitionTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleWeightMatrix.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TrainerTransition.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TransitionEvent.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/WeightMatrixAnnotator.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/WMAsMM.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/XmlMarkovModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/IllegalTransitionException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/SymbolSequenceRenderer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/FeatureRenderer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/SequenceRenderer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/BasicFeatureRenderer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/FeatureBlockSequenceRenderer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/LogoPainter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/SymbolStyle.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/BarLogoPainter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/DistributionLogo.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/DNAStyle.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/PlainStyle.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/SequencePanel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/SequencePanel.Border.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/SimpleSymbolStyle.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/TextLogoPainter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/UniformDistribution.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/Distribution.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DistributionFactory.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DistributionTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DistributionTrainerContext.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/AbstractDistribution.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/ComplementaryDistribution.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DistributionFactory.DefaultDistributionFactory.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DNADistribution.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/GapDistribution.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/IgnoreCountsTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/PairDistribution.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/SimpleDistribution.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/SimpleDistributionTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/SimpleDistributionTrainerContext.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchSubHit.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SeqSimilaritySearcher.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SeqSimilaritySearchHit.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SeqSimilaritySearchResult.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SeqSimilaritySearchSubHit.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchHit.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchResult.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/SimpleSequenceDBInstallation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/IDMaker.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/SequenceDB.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/SequenceDBInstallation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/AnnotatedSequenceDB.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/CachingSequenceDB.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/HashSequenceDB.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/IDMaker.ByName.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/IDMaker.ByURN.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/IndexedSequenceDB.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/StreamWriter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/AlignmentFormat.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/FastaDescriptionReader.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/FeatureBuilder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/SequenceFormat.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/DefaultDescriptionReader.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/EmblFormat.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/FastaFormat.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/GenbankFormat.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/SimpleFeatureBuilder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/StreamReader.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/StreamReader.Context.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/Feature.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureRealizer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/RealizingFeatureHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/Sequence.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SequenceAnnotator.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SequenceFactory.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SequenceIterator.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/StrandedFeature.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/AbstractFeatureHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/DNATools.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/Feature.Template.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.AcceptAllFilter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.And.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.BySource.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.ByType.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.ContainedByLocation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.Not.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.Or.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.OverlapsLocation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureHolder.EmptyFeatureHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/GeneticCode.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/MergeFeatureHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/ProteinTools.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SimpleFeatureHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SimpleFeatureRealizer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SimpleSequence.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SimpleSequenceFactory.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/StrandedFeature.Strand.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/StrandedFeature.Template.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/ViewSequence.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/IllegalSymbolException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Alignment.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Alphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AtomicSymbol.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/CrossProductAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/CrossProductSymbol.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/FiniteAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Location.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Symbol.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SymbolParser.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/TranslationTable.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AbstractAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AbstractSymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AllTokensAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Alphabet.EmptyAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AlphabetManager.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AlphabetManager.ListWrapper.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/CompoundLocation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/CrossProductSymbolNameParser.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/DoubleAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/DoubleAlphabet.DoubleSymbol.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/FixedWidthParser.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/GappedSymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/IntegerAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/IntegerAlphabet.IntegerSymbol.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Location.EmptyLocation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Location.LocationComparator.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/NameParser.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/OrderNSymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/PointLocation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/RangeLocation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/ReverseSymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleAlignment.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleAtomicSymbol.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleSymbol.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleSymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleTranslationTable.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SingletonAlphabet.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SuffixTree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SuffixTree.SuffixNode.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SymbolList.EmptySymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/TokenParser.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/TranslatedSymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/WindowedSymbolList.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/IllegalAlphabetException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/SimpleAnnotation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/BioException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/BioError.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/Annotatable.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/Annotation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/Annotation.EmptyAnnotation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/OverlayAnnotation.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SymbolListAdapter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/AnonymousSeqImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/FeatureAdapter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqDBImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqIteratorImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqDBImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqFeatureImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqFeatureIteratorImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceAdapter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceDBAdapter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceIteratorAdapter.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/UnknownImpl.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/TrainRegression.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.DepthScaler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/ClassifierExample.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/ClassifierExample.PointClassifier.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/Classify.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.MultipleScalar.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.NullModelScaler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.SelectionScalar.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.UniformScaler.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SVM_Light.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SVM_Light.LabelledVector.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/Train.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/ItemValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMClassifierModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMTarget.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingContext.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingListener.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/AbstractSVMClassifierModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/AbstractSVMTarget.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/CachingKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/DiagonalAddKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/DiagonalCachingKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/LinearKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/ListSumKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SMOTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/NestedKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/NormalizingKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/PolynomialKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/RadialBaseKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SigmoidKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleItemValue.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleSVMClassifierModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleSVMTarget.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SMORegressionTrainer.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SparseVector.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SparseVector.NormalizingKernel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMRegressionModel.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingEvent.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/Contract.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/AssertionFailedException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/PostconditionNotMetException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/PreconditionNotMetException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLPeerFactory.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLDispatcher.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLPeerBuilder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/ObjectUtil.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/StaticMemberPlaceHolder.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/TypedProperties.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/ParserException.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/deprecated-list.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/allclasses-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/index.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/packages.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-summary.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-frame.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/serialized-form.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/package-list
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/help-doc.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-tree.html
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/stylesheet.css
%%PORTDOCS%%%%DOCSDIR%%-1.01/api/index-all.html
@dirrm share/java/biojava-1.01/demos/acedb
@dirrm share/java/biojava-1.01/demos/gff
@dirrm share/java/biojava-1.01/demos/seq/db
@dirrm share/java/biojava-1.01/demos/seq
@dirrm share/java/biojava-1.01/demos/dist
@dirrm share/java/biojava-1.01/demos/dp
@dirrm share/java/biojava-1.01/demos/BioCorba
@dirrm share/java/biojava-1.01/demos/files
@dirrm share/java/biojava-1.01/demos/symbol
@dirrm share/java/biojava-1.01/demos/seqviewer
@dirrm share/java/biojava-1.01/demos
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/GNOME
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/socket
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/staticobj
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/seq
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/Biocorba
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/program
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/dp
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/gui
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/dist
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/search
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/symbol
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats/svm
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils/contract
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils/xml
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api
%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01