artemis-4.0/CVS/Root artemis-4.0/CVS/Repository artemis-4.0/CVS/Entries artemis-4.0/.cvsignore artemis-4.0/AppGlobal.java artemis-4.0/COPYING artemis-4.0/COPYING.JacORB artemis-4.0/CorbaApplet.java artemis-4.0/Diana.java artemis-4.0/INSTALL artemis-4.0/Makefile artemis-4.0/README artemis-4.0/art artemis-4.0/art.bat artemis-4.0/mart artemis-4.0/results_to_netscape artemis-4.0/run_blast artemis-4.0/run_blastn artemis-4.0/run_blastp artemis-4.0/run_blastx artemis-4.0/run_fasta artemis-4.0/run_hth artemis-4.0/run_jalview artemis-4.0/run_sigcleave artemis-4.0/run_tblastn artemis-4.0/run_tblastx artemis-4.0/META-INF/CVS/Root artemis-4.0/META-INF/CVS/Repository artemis-4.0/META-INF/CVS/Entries artemis-4.0/META-INF/MANIFEST.MF artemis-4.0/collections/CVS/Root artemis-4.0/collections/CVS/Repository artemis-4.0/collections/CVS/Entries artemis-4.0/collections/ArrayEnumeration.java artemis-4.0/collections/Assertable.java artemis-4.0/collections/Bag.java artemis-4.0/collections/BinaryFunction.java artemis-4.0/collections/CEImpl.java artemis-4.0/collections/CLCell.java artemis-4.0/collections/CLEnumeration.java artemis-4.0/collections/Cell.java artemis-4.0/collections/CheckedBag.java artemis-4.0/collections/CheckedCollection.java artemis-4.0/collections/CheckedMap.java artemis-4.0/collections/CheckedSeq.java artemis-4.0/collections/CheckedSet.java artemis-4.0/collections/Keyed.java artemis-4.0/collections/CircularList.java artemis-4.0/collections/Collection.java artemis-4.0/collections/CollectionEnumeration.java artemis-4.0/collections/Comparator.java artemis-4.0/collections/Dynarray.java artemis-4.0/collections/CorruptedEnumerationException.java artemis-4.0/collections/DAEnumeration.java artemis-4.0/collections/DefaultComparator.java artemis-4.0/collections/DefaultImplementations.java artemis-4.0/collections/ElementSortedCollection.java artemis-4.0/collections/FilteringEnumeration.java artemis-4.0/collections/Function.java artemis-4.0/collections/HTEnumeration.java artemis-4.0/collections/HTPairEnumeration.java artemis-4.0/collections/HashTableParams.java artemis-4.0/collections/HashedMap.java artemis-4.0/collections/HashedSet.java artemis-4.0/collections/IllegalElementException.java artemis-4.0/collections/Immutable.java artemis-4.0/collections/ImplementationCheckable.java artemis-4.0/collections/IncrBag.java artemis-4.0/collections/ImplementationError.java artemis-4.0/collections/IncrCollectionEnumeration.java artemis-4.0/collections/IncrImpl.java artemis-4.0/collections/IncrMap.java artemis-4.0/collections/IncrSeq.java artemis-4.0/collections/IncrSet.java artemis-4.0/collections/InterleavingEnumeration.java artemis-4.0/collections/KeySortedCollection.java artemis-4.0/collections/LBEnumeration.java artemis-4.0/collections/LLCell.java artemis-4.0/collections/LLCellEnumeration.java artemis-4.0/collections/LLMap.java artemis-4.0/collections/LLPair.java artemis-4.0/collections/LLPairEnumeration.java artemis-4.0/collections/LinkedBuffer.java artemis-4.0/collections/LinkedList.java artemis-4.0/collections/Map.java artemis-4.0/collections/MappingEnumeration.java artemis-4.0/collections/Pair.java artemis-4.0/collections/Predicate.java artemis-4.0/collections/Procedure.java artemis-4.0/collections/RBCell.java artemis-4.0/collections/RBCellEnumeration.java artemis-4.0/collections/RBMap.java artemis-4.0/collections/RBPair.java artemis-4.0/collections/RBPairEnumeration.java artemis-4.0/collections/RBTree.java artemis-4.0/collections/Seq.java artemis-4.0/collections/Set.java artemis-4.0/collections/SimpleTest.java artemis-4.0/collections/SortableCollection.java artemis-4.0/collections/UpdatableBag.java artemis-4.0/collections/UpdatableBagImpl.java artemis-4.0/collections/UpdatableCollection.java artemis-4.0/collections/UpdatableImpl.java artemis-4.0/collections/UpdatableMap.java artemis-4.0/collections/UpdatableMapImpl.java artemis-4.0/collections/javaMake artemis-4.0/collections/UpdatableSeq.java artemis-4.0/collections/UpdatableSeqImpl.java artemis-4.0/collections/UpdatableSet.java artemis-4.0/collections/UpdatableSetImpl.java artemis-4.0/collections/collections_Dynarray.h artemis-4.0/collections/Dynarray.class artemis-4.0/collections/UpdatableSeqImpl.class artemis-4.0/collections/UpdatableSeq.class artemis-4.0/collections/SortableCollection.class artemis-4.0/collections/Seq.class artemis-4.0/collections/UpdatableImpl.class artemis-4.0/collections/UpdatableCollection.class artemis-4.0/collections/IllegalElementException.class artemis-4.0/collections/CorruptedEnumerationException.class artemis-4.0/collections/ImplementationError.class artemis-4.0/collections/Collection.class artemis-4.0/collections/Assertable.class artemis-4.0/collections/ImplementationCheckable.class artemis-4.0/collections/Comparator.class artemis-4.0/collections/Predicate.class artemis-4.0/collections/CollectionEnumeration.class artemis-4.0/collections/DAEnumeration.class artemis-4.0/collections/CEImpl.class artemis-4.0/collections/KeySortedCollection.class artemis-4.0/collections/Map.class artemis-4.0/collections/ElementSortedCollection.class artemis-4.0/collections/Bag.class artemis-4.0/collections/Set.class artemis-4.0/collections/RBTree.class artemis-4.0/collections/UpdatableBagImpl.class artemis-4.0/collections/UpdatableBag.class artemis-4.0/collections/RBCell.class artemis-4.0/collections/Cell.class artemis-4.0/collections/DefaultComparator.class artemis-4.0/collections/RBCellEnumeration.class artemis-4.0/collections/Keyed.class artemis-4.0/corba/CVS/Root artemis-4.0/corba/CVS/Repository artemis-4.0/corba/CVS/Entries artemis-4.0/corba/apollo.idl artemis-4.0/corba/ensembl.idl artemis-4.0/corba/nsdb.idl artemis-4.0/corba/nsdb_write.idl artemis-4.0/corba/seqdb.idl artemis-4.0/corba/types.idl artemis-4.0/diana/CVS/Root artemis-4.0/diana/CVS/Repository artemis-4.0/diana/CVS/Entries artemis-4.0/diana/AlignMatch.java artemis-4.0/diana/AlignMatchVector.java artemis-4.0/diana/ChangeEvent.java artemis-4.0/diana/ChangeListener.java artemis-4.0/diana/ClipBoard.java artemis-4.0/diana/ComparisonData.java artemis-4.0/diana/ComparisonDataFactory.java artemis-4.0/diana/ComparisonDataParseException.java artemis-4.0/diana/Entry.java artemis-4.0/diana/EntryChangeEvent.java artemis-4.0/diana/EntryChangeListener.java artemis-4.0/diana/EntryGroup.java artemis-4.0/diana/EntryGroupChangeEvent.java artemis-4.0/diana/EntryGroupChangeListener.java artemis-4.0/diana/EntrySource.java artemis-4.0/diana/plot/CVS/Root artemis-4.0/diana/plot/CVS/Repository artemis-4.0/diana/plot/CVS/Entries artemis-4.0/diana/plot/AGWindowAlgorithm.java artemis-4.0/diana/plot/ATDeviationAlgorithm.java artemis-4.0/diana/plot/Algorithm.java artemis-4.0/diana/plot/BaseAlgorithm.java artemis-4.0/diana/plot/Codon12CorrelationAlgorithm.java artemis-4.0/diana/plot/CodonUsageAlgorithm.java artemis-4.0/diana/plot/CodonUsageFormatException.java artemis-4.0/diana/plot/CodonUsageWeight.java artemis-4.0/diana/plot/CodonWeight.java artemis-4.0/diana/plot/CoilFeatureAlgorithm.java artemis-4.0/diana/plot/HydroAlgorithm.java artemis-4.0/diana/plot/FeatureAlgorithm.java artemis-4.0/diana/plot/GCDeviationAlgorithm.java artemis-4.0/diana/plot/GCFrameAlgorithm.java artemis-4.0/diana/plot/GCSDWindowAlgorithm.java artemis-4.0/diana/plot/GCWindowAlgorithm.java artemis-4.0/diana/plot/HydrophilicityAlgorithm.java artemis-4.0/diana/plot/HydrophobicityAlgorithm.java artemis-4.0/diana/plot/UserDataAlgorithm.java artemis-4.0/diana/plot/CodonUsageAlgorithm.class artemis-4.0/diana/plot/BaseAlgorithm.class artemis-4.0/diana/plot/Algorithm.class artemis-4.0/diana/plot/UserDataAlgorithm.class artemis-4.0/diana/plot/CodonUsageWeight.class artemis-4.0/diana/plot/CodonWeight.class artemis-4.0/diana/plot/GCWindowAlgorithm.class artemis-4.0/diana/plot/GCSDWindowAlgorithm.class artemis-4.0/diana/plot/AGWindowAlgorithm.class artemis-4.0/diana/plot/GCFrameAlgorithm.class artemis-4.0/diana/plot/Codon12CorrelationAlgorithm.class artemis-4.0/diana/plot/GCDeviationAlgorithm.class artemis-4.0/diana/plot/ATDeviationAlgorithm.class artemis-4.0/diana/plot/CodonUsageFormatException.class artemis-4.0/diana/plot/FeatureAlgorithm.class artemis-4.0/diana/plot/HydroAlgorithm.class artemis-4.0/diana/plot/HydrophobicityAlgorithm.class artemis-4.0/diana/plot/HydrophilicityAlgorithm.class artemis-4.0/diana/plot/CoilFeatureAlgorithm.class artemis-4.0/diana/EntrySourceVector.java artemis-4.0/diana/EntryVector.java artemis-4.0/diana/ExternalApplication.java artemis-4.0/diana/ExternalProgram.java artemis-4.0/diana/ExternalProgramException.java artemis-4.0/diana/ExternalProgramVector.java artemis-4.0/diana/ExternalSearchProgram.java artemis-4.0/diana/Feature.java artemis-4.0/diana/FeatureChangeEvent.java artemis-4.0/diana/FeatureChangeListener.java artemis-4.0/diana/FeatureEnumeration.java artemis-4.0/diana/FeatureFromVectorPredicate.java artemis-4.0/diana/FeatureKeyPredicate.java artemis-4.0/diana/FeatureKeyQualifierPredicate.java artemis-4.0/diana/FeatureSegment.java artemis-4.0/diana/FeaturePredicate.java artemis-4.0/diana/FeatureSegmentVector.java artemis-4.0/diana/FeatureVector.java artemis-4.0/diana/FilteredEntryGroup.java artemis-4.0/diana/GotoEvent.java artemis-4.0/diana/GotoEventSource.java artemis-4.0/diana/GotoListener.java artemis-4.0/diana/LastSegmentException.java artemis-4.0/diana/Logger.java artemis-4.0/diana/MSPcrunchComparisonData.java artemis-4.0/diana/MUMmerComparisonData.java artemis-4.0/diana/Options.java artemis-4.0/diana/Selectable.java artemis-4.0/diana/Selection.java artemis-4.0/diana/SelectionChangeEvent.java artemis-4.0/diana/SelectionChangeListener.java artemis-4.0/diana/helix.gif artemis-4.0/diana/SimpleComparisonData.java artemis-4.0/diana/SimpleEntryGroup.java artemis-4.0/diana/SimpleGotoEventSource.java artemis-4.0/diana/sanger-centre.gif artemis-4.0/diana/components/CVS/Root artemis-4.0/diana/components/CVS/Repository artemis-4.0/diana/components/CVS/Entries artemis-4.0/diana/components/ActMain.java artemis-4.0/diana/components/AddMenu.java artemis-4.0/diana/components/AlignmentViewer.java artemis-4.0/diana/components/ArtemisMain.java artemis-4.0/diana/components/BasePlot.java artemis-4.0/diana/components/BasePlotGroup.java artemis-4.0/diana/components/CanvasPanel.java artemis-4.0/diana/components/Comparator.java artemis-4.0/diana/components/ComparatorDialog.java artemis-4.0/diana/components/CorbaEntrySource.java artemis-4.0/diana/components/DisplayAdjustmentEvent.java artemis-4.0/diana/components/DisplayAdjustmentListener.java artemis-4.0/diana/components/DisplayComponent.java artemis-4.0/diana/components/EMBLCorbaEntrySource.java artemis-4.0/diana/components/EditMenu.java artemis-4.0/diana/components/EnsemblEntrySource.java artemis-4.0/diana/components/EntryActionListener.java artemis-4.0/diana/components/EntryEdit.java artemis-4.0/diana/components/EntryEditVector.java artemis-4.0/diana/components/EntryFileDialog.java artemis-4.0/diana/components/EntryGroupDisplay.java artemis-4.0/diana/components/EntryGroupInfoDisplay.java artemis-4.0/diana/components/EntryGroupMenu.java artemis-4.0/diana/components/EntryGroupPanel.java artemis-4.0/diana/components/EntryHeaderEdit.java artemis-4.0/diana/components/ExternalProgramOptions.java artemis-4.0/diana/components/FeatureAminoAcidViewer.java artemis-4.0/diana/components/FeatureBaseViewer.java artemis-4.0/diana/components/FeatureDisplay.java artemis-4.0/diana/components/FeatureDisplayOwner.java artemis-4.0/diana/components/FeatureEdit.java artemis-4.0/diana/components/FeatureInfo.java artemis-4.0/diana/components/FeatureList.java artemis-4.0/diana/components/FeatureListFrame.java artemis-4.0/diana/components/FeaturePlot.java artemis-4.0/diana/components/FeaturePlotGroup.java artemis-4.0/diana/components/FeaturePopup.java artemis-4.0/diana/components/FeatureViewer.java artemis-4.0/diana/components/FileDialogEntrySource.java artemis-4.0/diana/components/FileViewer.java artemis-4.0/diana/components/GotoMenu.java artemis-4.0/diana/components/KeyChoice.java artemis-4.0/diana/components/KeyChooser.java artemis-4.0/diana/components/ListDialog.java artemis-4.0/diana/components/LogViewer.java artemis-4.0/diana/components/MarkerRangeRequester.java artemis-4.0/diana/components/MarkerRangeRequesterEvent.java artemis-4.0/diana/components/MarkerRangeRequesterListener.java artemis-4.0/diana/components/MessageDialog.java artemis-4.0/diana/components/MessageFrame.java artemis-4.0/diana/components/Navigator.java artemis-4.0/diana/components/Plot.java artemis-4.0/diana/components/PlotMouseListener.java artemis-4.0/diana/components/ProcessWatcher.java artemis-4.0/diana/components/ProcessWatcherEvent.java artemis-4.0/diana/components/ProcessWatcherListener.java artemis-4.0/diana/components/QualifierChoice.java artemis-4.0/diana/components/RawFeatureEdit.java artemis-4.0/diana/components/RunMenu.java artemis-4.0/diana/components/ScoreChangeEvent.java artemis-4.0/diana/components/ScoreChangeListener.java artemis-4.0/diana/components/ScoreChanger.java artemis-4.0/diana/components/ScoreScrollbar.java artemis-4.0/diana/components/SearchResultViewer.java artemis-4.0/diana/components/SelectMenu.java artemis-4.0/diana/components/SelectionInfoDisplay.java artemis-4.0/diana/components/SelectionMenu.java artemis-4.0/diana/components/SelectionViewer.java artemis-4.0/diana/components/Selector.java artemis-4.0/diana/components/SequenceViewer.java artemis-4.0/diana/components/Splash.java artemis-4.0/diana/components/TextDialog.java artemis-4.0/diana/components/TextRequester.java artemis-4.0/diana/components/TextRequesterEvent.java artemis-4.0/diana/components/TextRequesterListener.java artemis-4.0/diana/components/ViewMenu.java artemis-4.0/diana/components/WritableEMBLCorbaEntrySource.java artemis-4.0/diana/components/WriteMenu.java artemis-4.0/diana/components/Plot.class artemis-4.0/diana/components/YesNoDialog.java artemis-4.0/diana/components/ArtemisMain.class artemis-4.0/diana/components/ArtemisMain$1.class artemis-4.0/diana/components/ArtemisMain$2.class artemis-4.0/diana/components/ArtemisMain$3.class artemis-4.0/diana/components/ArtemisMain$4.class artemis-4.0/diana/components/ArtemisMain$5.class artemis-4.0/diana/components/ArtemisMain$6.class artemis-4.0/diana/components/Splash.class artemis-4.0/diana/components/Splash$1.class artemis-4.0/diana/components/Splash$2.class artemis-4.0/diana/components/Splash$3.class artemis-4.0/diana/components/EntryEditVector.class artemis-4.0/diana/components/LogViewer.class artemis-4.0/diana/components/LogViewer$1.class artemis-4.0/diana/components/EntryEdit.class artemis-4.0/diana/components/EntryEdit$1.class artemis-4.0/diana/components/EntryEdit$2.class artemis-4.0/diana/components/EntryEdit$3.class artemis-4.0/diana/components/EntryEdit$4.class artemis-4.0/diana/components/EntryEdit$5.class artemis-4.0/diana/components/EntryEdit$6.class artemis-4.0/diana/components/EntryEdit$7.class artemis-4.0/diana/components/EntryEdit$8.class artemis-4.0/diana/components/EntryEdit$9.class artemis-4.0/diana/components/EntryEdit$10.class artemis-4.0/diana/components/EntryEdit$11.class artemis-4.0/diana/components/EntryEdit$12.class artemis-4.0/diana/components/EntryEdit$13.class artemis-4.0/diana/components/EntryEdit$14.class artemis-4.0/diana/components/EntryEdit$15.class artemis-4.0/diana/components/ReadFeaturesActionListener.class artemis-4.0/diana/components/SaveEntryActionListener.class artemis-4.0/diana/components/SaveEntryAsActionListener.class artemis-4.0/diana/components/SaveEntryAsEMBLActionListener.class artemis-4.0/diana/components/SaveEntryAsGenbankActionListener.class artemis-4.0/diana/components/SaveEntryAsGFFActionListener.class artemis-4.0/diana/components/SaveEntryAsSubmissionActionListener.class artemis-4.0/diana/components/MessageDialog.class artemis-4.0/diana/components/FeatureDisplayOwner.class artemis-4.0/diana/components/EntryFileDialog.class artemis-4.0/diana/components/MessageDialog$1.class artemis-4.0/diana/components/MessageDialog$2.class artemis-4.0/diana/components/MessageDialog$3.class artemis-4.0/diana/components/FileDialogEntrySource.class artemis-4.0/diana/components/EMBLCorbaEntrySource.class artemis-4.0/diana/components/CorbaEntrySource.class artemis-4.0/diana/components/WritableEMBLCorbaEntrySource.class artemis-4.0/diana/components/FileViewer.class artemis-4.0/diana/components/FileViewer$1.class artemis-4.0/diana/components/FileViewer$2.class artemis-4.0/diana/components/FileViewer$3.class artemis-4.0/diana/components/MessageFrame.class artemis-4.0/diana/components/MessageFrame$1.class artemis-4.0/diana/components/MessageFrame$2.class artemis-4.0/diana/components/MessageFrame$3.class artemis-4.0/diana/components/ViewMenu.class artemis-4.0/diana/components/ViewMenu$1.class artemis-4.0/diana/components/ViewMenu$2.class artemis-4.0/diana/components/ViewMenu$3.class artemis-4.0/diana/components/ViewMenu$4.class artemis-4.0/diana/components/ViewMenu$5.class artemis-4.0/diana/components/ViewMenu$6.class artemis-4.0/diana/components/ViewMenu$7.class artemis-4.0/diana/components/ViewMenu$8.class artemis-4.0/diana/components/ViewMenu$9.class artemis-4.0/diana/components/ViewMenu$10.class artemis-4.0/diana/components/ViewMenu$11.class artemis-4.0/diana/components/ViewMenu$12.class artemis-4.0/diana/components/ViewMenu$13.class artemis-4.0/diana/components/ViewMenu$14.class artemis-4.0/diana/components/ViewMenu$15.class artemis-4.0/diana/components/ViewMenu$16.class artemis-4.0/diana/components/ViewMenu$17.class artemis-4.0/diana/components/ViewMenu$18.class artemis-4.0/diana/components/ViewMenu$19.class artemis-4.0/diana/components/ViewMenu$20.class artemis-4.0/diana/components/ViewMenu$21.class artemis-4.0/diana/components/ViewMenu$22.class artemis-4.0/diana/components/ViewMenu$23.class artemis-4.0/diana/components/ViewMenu$24.class artemis-4.0/diana/components/ViewMenu$25.class artemis-4.0/diana/components/ViewMenu$26.class artemis-4.0/diana/components/ViewMenu$27.class artemis-4.0/diana/components/ViewMenu$28.class artemis-4.0/diana/components/ViewMenu$29.class artemis-4.0/diana/components/SelectionMenu.class artemis-4.0/diana/components/AddMenu.class artemis-4.0/diana/components/AddMenu$1.class artemis-4.0/diana/components/AddMenu$2.class artemis-4.0/diana/components/AddMenu$3.class artemis-4.0/diana/components/AddMenu$4.class artemis-4.0/diana/components/AddMenu$5.class artemis-4.0/diana/components/AddMenu$6.class artemis-4.0/diana/components/AddMenu$7.class artemis-4.0/diana/components/AddMenu$8.class artemis-4.0/diana/components/AddMenu$9.class artemis-4.0/diana/components/AddMenu$10.class artemis-4.0/diana/components/AddMenu$11.class artemis-4.0/diana/components/AddMenu$12.class artemis-4.0/diana/components/AddMenu$13.class artemis-4.0/diana/components/AddMenu$14.class artemis-4.0/diana/components/AddMenu$15.class artemis-4.0/diana/components/EntryGroupDisplay.class artemis-4.0/diana/components/EntryGroupDisplay$1.class artemis-4.0/diana/components/EntryGroupDisplay$2.class artemis-4.0/diana/components/FeatureDisplay.class artemis-4.0/diana/components/GotoMenu.class artemis-4.0/diana/components/FeatureDisplay$1.class artemis-4.0/diana/components/FeatureDisplay$2.class artemis-4.0/diana/components/EditMenu.class artemis-4.0/diana/components/FeatureDisplay$3.class artemis-4.0/diana/components/FeatureDisplay$4.class artemis-4.0/diana/components/FeatureDisplay$5.class artemis-4.0/diana/components/FeatureDisplay$6.class artemis-4.0/diana/components/EntryGroupPanel.class artemis-4.0/diana/components/DisplayComponent.class artemis-4.0/diana/components/EntryGroupPanel$1.class artemis-4.0/diana/components/CanvasPanel.class artemis-4.0/diana/components/CanvasPanel$1.class artemis-4.0/diana/components/BasePlotGroup.class artemis-4.0/diana/components/SelectionInfoDisplay.class artemis-4.0/diana/components/DisplayAdjustmentListener.class artemis-4.0/diana/components/FeatureList.class artemis-4.0/diana/components/FeatureList$1.class artemis-4.0/diana/components/FeatureList$2.class artemis-4.0/diana/components/FeatureList$3.class artemis-4.0/diana/components/YesNoDialog.class artemis-4.0/diana/components/YesNoDialog$1.class artemis-4.0/diana/components/YesNoDialog$2.class artemis-4.0/diana/components/YesNoDialog$3.class artemis-4.0/diana/components/EntryGroupMenu.class artemis-4.0/diana/components/EntryGroupMenu$1.class artemis-4.0/diana/components/EntryGroupMenu$2.class artemis-4.0/diana/components/EntryGroupMenu$3.class artemis-4.0/diana/components/EntryGroupMenu$4.class artemis-4.0/diana/components/EntryGroupMenu$5.class artemis-4.0/diana/components/EntryGroupMenu$6.class artemis-4.0/diana/components/SelectMenu.class artemis-4.0/diana/components/SelectMenu$1.class artemis-4.0/diana/components/SelectMenu$2.class artemis-4.0/diana/components/SelectMenu$3.class artemis-4.0/diana/components/SelectMenu$4.class artemis-4.0/diana/components/SelectMenu$5.class artemis-4.0/diana/components/SelectMenu$6.class artemis-4.0/diana/components/SelectMenu$7.class artemis-4.0/diana/components/SelectMenu$8.class artemis-4.0/diana/components/SelectMenu$9.class artemis-4.0/diana/components/SelectMenu$10.class artemis-4.0/diana/components/SelectMenu$11.class artemis-4.0/diana/components/SelectMenu$12.class artemis-4.0/diana/components/SelectMenu$13.class artemis-4.0/diana/components/SelectMenu$14.class artemis-4.0/diana/components/SelectMenu$15.class artemis-4.0/diana/components/SelectMenu$16.class artemis-4.0/diana/components/GotoMenu$1.class artemis-4.0/diana/components/GotoMenu$2.class artemis-4.0/diana/components/GotoMenu$3.class artemis-4.0/diana/components/GotoMenu$4.class artemis-4.0/diana/components/GotoMenu$5.class artemis-4.0/diana/components/GotoMenu$6.class artemis-4.0/diana/components/GotoMenu$7.class artemis-4.0/diana/components/GotoMenu$8.class artemis-4.0/diana/components/GotoMenu$9.class artemis-4.0/diana/components/GotoMenu$10.class artemis-4.0/diana/components/EditMenu$1.class artemis-4.0/diana/components/EditMenu$2.class artemis-4.0/diana/components/EditMenu$3.class artemis-4.0/diana/components/EditMenu$4.class artemis-4.0/diana/components/EditMenu$5.class artemis-4.0/diana/components/EditMenu$6.class artemis-4.0/diana/components/EditMenu$7.class artemis-4.0/diana/components/EditMenu$8.class artemis-4.0/diana/components/EditMenu$9.class artemis-4.0/diana/components/EditMenu$10.class artemis-4.0/diana/components/EditMenu$11.class artemis-4.0/diana/components/EditMenu$12.class artemis-4.0/diana/components/EditMenu$13.class artemis-4.0/diana/components/EditMenu$14.class artemis-4.0/diana/components/EditMenu$15.class artemis-4.0/diana/components/EditMenu$16.class artemis-4.0/diana/components/EditMenu$17.class artemis-4.0/diana/components/EditMenu$18.class artemis-4.0/diana/components/EditMenu$19.class artemis-4.0/diana/components/EditMenu$20.class artemis-4.0/diana/components/EditMenu$21.class artemis-4.0/diana/components/EditMenu$22.class artemis-4.0/diana/components/WriteMenu.class artemis-4.0/diana/components/WriteMenu$1.class artemis-4.0/diana/components/WriteMenu$2.class artemis-4.0/diana/components/WriteMenu$3.class artemis-4.0/diana/components/WriteMenu$4.class artemis-4.0/diana/components/WriteMenu$5.class artemis-4.0/diana/components/WriteMenu$6.class artemis-4.0/diana/components/WriteMenu$7.class artemis-4.0/diana/components/WriteMenu$8.class artemis-4.0/diana/components/WriteMenu$9.class artemis-4.0/diana/components/WriteMenu$10.class artemis-4.0/diana/components/WriteMenu$11.class artemis-4.0/diana/components/WriteMenu$12.class artemis-4.0/diana/components/WriteMenu$13.class artemis-4.0/diana/components/WriteMenu$14.class artemis-4.0/diana/components/WriteMenu$15.class artemis-4.0/diana/components/WriteMenu$16.class artemis-4.0/diana/components/WriteMenu$17.class artemis-4.0/diana/components/WriteMenu$18.class artemis-4.0/diana/components/WriteMenu$19.class artemis-4.0/diana/components/WriteMenu$20.class artemis-4.0/diana/components/WriteMenu$21.class artemis-4.0/diana/components/RunMenu.class artemis-4.0/diana/components/RunMenu$1.class artemis-4.0/diana/components/RunMenu$2.class artemis-4.0/diana/components/EntryActionListener.class artemis-4.0/diana/components/BasePlot.class artemis-4.0/diana/components/BasePlot$1.class artemis-4.0/diana/components/Plot$1.class artemis-4.0/diana/components/Plot$2.class artemis-4.0/diana/components/Plot$3.class artemis-4.0/diana/components/Plot$4.class artemis-4.0/diana/components/Plot$5.class artemis-4.0/diana/components/Plot$6.class artemis-4.0/diana/components/Plot$7.class artemis-4.0/diana/components/TextDialog.class artemis-4.0/diana/components/TextDialog$1.class artemis-4.0/diana/components/TextDialog$2.class artemis-4.0/diana/components/TextDialog$3.class artemis-4.0/diana/components/ListDialog.class artemis-4.0/diana/components/ListDialog$1.class artemis-4.0/diana/components/ListDialog$2.class artemis-4.0/diana/components/SelectionViewer.class artemis-4.0/diana/components/SelectionViewer$1.class artemis-4.0/diana/components/EntryGroupInfoDisplay.class artemis-4.0/diana/components/EntryGroupInfoDisplay$1.class artemis-4.0/diana/components/EntryGroupInfoDisplay$2.class artemis-4.0/diana/components/EntryGroupInfoDisplay$3.class artemis-4.0/diana/components/FeatureListFrame.class artemis-4.0/diana/components/FeatureListFrame$1.class artemis-4.0/diana/components/FeatureListFrame$2.class artemis-4.0/diana/components/FeatureListFrame$3.class artemis-4.0/diana/components/KeyChooser.class artemis-4.0/diana/components/KeyChooser$1.class artemis-4.0/diana/components/KeyChooser$2.class artemis-4.0/diana/components/KeyChooser$3.class artemis-4.0/diana/components/KeyChooser$4.class artemis-4.0/diana/components/KeyChoice.class artemis-4.0/diana/components/KeyChoice$1.class artemis-4.0/diana/components/FeatureViewer.class artemis-4.0/diana/components/FeatureViewer$1.class artemis-4.0/diana/components/FeaturePlotGroup.class artemis-4.0/diana/components/FeaturePlotGroup$1.class artemis-4.0/diana/components/FeaturePlotGroup$2.class artemis-4.0/diana/components/FeaturePlotGroup$3.class artemis-4.0/diana/components/FeaturePlotGroup$4.class artemis-4.0/diana/components/FeaturePlotGroup$5.class artemis-4.0/diana/components/SearchResultViewer.class artemis-4.0/diana/components/SearchResultViewer$1.class artemis-4.0/diana/components/FeatureInfo.class artemis-4.0/diana/components/FeatureInfo$1.class artemis-4.0/diana/components/FeatureInfo$2.class artemis-4.0/diana/components/FeatureBaseViewer.class artemis-4.0/diana/components/FeatureBaseViewer$1.class artemis-4.0/diana/components/FeatureAminoAcidViewer.class artemis-4.0/diana/components/FeatureAminoAcidViewer$1.class artemis-4.0/diana/components/FeatureEdit.class artemis-4.0/diana/components/FeatureEdit$1.class artemis-4.0/diana/components/FeatureEdit$2.class artemis-4.0/diana/components/FeatureEdit$3.class artemis-4.0/diana/components/FeatureEdit$4.class artemis-4.0/diana/components/FeatureEdit$5.class artemis-4.0/diana/components/FeatureEdit$6.class artemis-4.0/diana/components/FeatureEdit$7.class artemis-4.0/diana/components/FeatureEdit$8.class artemis-4.0/diana/components/FeatureEdit$9.class artemis-4.0/diana/components/FeatureEdit$10.class artemis-4.0/diana/components/TextRequester.class artemis-4.0/diana/components/TextRequester$1.class artemis-4.0/diana/components/TextRequester$2.class artemis-4.0/diana/components/TextRequester$3.class artemis-4.0/diana/components/TextRequesterListener.class artemis-4.0/diana/components/TextRequesterEvent.class artemis-4.0/diana/components/FeaturePopup.class artemis-4.0/diana/components/FeaturePopup$1.class artemis-4.0/diana/components/FeaturePopup$2.class artemis-4.0/diana/components/Selector.class artemis-4.0/diana/components/FeaturePopup$3.class artemis-4.0/diana/components/FeaturePopup$4.class artemis-4.0/diana/components/FeaturePopup$5.class artemis-4.0/diana/components/FeaturePopup$6.class artemis-4.0/diana/components/FeaturePopup$7.class artemis-4.0/diana/components/FeaturePopup$8.class artemis-4.0/diana/components/FeaturePopup$9.class artemis-4.0/diana/components/FeaturePopup$10.class artemis-4.0/diana/components/FeaturePopup$11.class artemis-4.0/diana/components/FeaturePopup$12.class artemis-4.0/diana/components/FeaturePopup$13.class artemis-4.0/diana/components/FeaturePopup$14.class artemis-4.0/diana/components/FeaturePopup$15.class artemis-4.0/diana/components/FeaturePopup$16.class artemis-4.0/diana/components/FeaturePopup$17.class artemis-4.0/diana/components/FeaturePopup$18.class artemis-4.0/diana/components/FeaturePopup$19.class artemis-4.0/diana/components/FeaturePopup$20.class artemis-4.0/diana/components/FeaturePopup$21.class artemis-4.0/diana/components/DisplayAdjustmentEvent.class artemis-4.0/diana/components/EntryHeaderEdit.class artemis-4.0/diana/components/EntryHeaderEdit$1.class artemis-4.0/diana/components/Selector$1.class artemis-4.0/diana/components/Selector$2.class artemis-4.0/diana/components/Selector$3.class artemis-4.0/diana/components/Selector$4.class artemis-4.0/diana/components/Selector$5.class artemis-4.0/diana/components/Selector$6.class artemis-4.0/diana/components/Selector$7.class artemis-4.0/diana/components/Selector$8.class artemis-4.0/diana/components/Selector$9.class artemis-4.0/diana/components/Selector$10.class artemis-4.0/diana/components/Selector$11.class artemis-4.0/diana/components/Selector$12.class artemis-4.0/diana/components/MarkerRangeRequester.class artemis-4.0/diana/components/MarkerRangeRequesterListener.class artemis-4.0/diana/components/MarkerRangeRequesterEvent.class artemis-4.0/diana/components/Navigator.class artemis-4.0/diana/components/Navigator$1.class artemis-4.0/diana/components/Navigator$2.class artemis-4.0/diana/components/Navigator$3.class artemis-4.0/diana/components/Navigator$4.class artemis-4.0/diana/components/Navigator$5.class artemis-4.0/diana/components/Navigator$6.class artemis-4.0/diana/components/Navigator$7.class artemis-4.0/diana/components/Navigator$8.class artemis-4.0/diana/components/Navigator$9.class artemis-4.0/diana/components/ProcessWatcher.class artemis-4.0/diana/components/ExternalProgramOptions.class artemis-4.0/diana/components/ExternalProgramOptions$1.class artemis-4.0/diana/components/PlotMouseListener.class artemis-4.0/diana/components/FeaturePlot.class artemis-4.0/diana/components/SequenceViewer.class artemis-4.0/diana/components/QualifierChoice.class artemis-4.0/diana/components/ProcessWatcherListener.class artemis-4.0/diana/components/ProcessWatcherEvent.class artemis-4.0/diana/components/ScoreChangeListener.class artemis-4.0/diana/components/ScoreChangeEvent.class artemis-4.0/diana/components/ScoreChanger.class artemis-4.0/diana/components/ScoreChanger$1.class artemis-4.0/diana/components/ScoreChanger$2.class artemis-4.0/diana/components/ScoreChanger$3.class artemis-4.0/diana/components/ScoreChanger$4.class artemis-4.0/diana/components/ScoreChanger$5.class artemis-4.0/diana/components/ScoreScrollbar.class artemis-4.0/diana/sequence/CVS/Root artemis-4.0/diana/sequence/CVS/Repository artemis-4.0/diana/sequence/CVS/Entries artemis-4.0/diana/sequence/AminoAcidSequence.java artemis-4.0/diana/sequence/BasePattern.java artemis-4.0/diana/sequence/BasePatternFormatException.java artemis-4.0/diana/sequence/Bases.java artemis-4.0/diana/sequence/Marker.java artemis-4.0/diana/sequence/MarkerChangeEvent.java artemis-4.0/diana/sequence/MarkerChangeListener.java artemis-4.0/diana/sequence/MarkerRange.java artemis-4.0/diana/sequence/MarkerRangeVector.java artemis-4.0/diana/sequence/NoSequenceException.java artemis-4.0/diana/sequence/SequenceChangeEvent.java artemis-4.0/diana/sequence/SequenceChangeListener.java artemis-4.0/diana/sequence/Strand.java artemis-4.0/diana/sequence/NoSequenceException.class artemis-4.0/diana/sequence/SequenceChangeListener.class artemis-4.0/diana/sequence/Bases.class artemis-4.0/diana/sequence/MarkerRange.class artemis-4.0/diana/sequence/Marker.class artemis-4.0/diana/sequence/MarkerInternal.class artemis-4.0/diana/sequence/MarkerChangeListener.class artemis-4.0/diana/sequence/Strand.class artemis-4.0/diana/sequence/SequenceChangeEvent.class artemis-4.0/diana/sequence/AminoAcidSequence.class artemis-4.0/diana/sequence/BasePattern.class artemis-4.0/diana/sequence/BasePatternFormatException.class artemis-4.0/diana/sequence/MarkerRangeVector.class artemis-4.0/diana/sequence/MarkerChangeEvent.class artemis-4.0/diana/Logger.class artemis-4.0/diana/Options.class artemis-4.0/diana/EntryGroupChangeListener.class artemis-4.0/diana/EntryChangeListener.class artemis-4.0/diana/ChangeListener.class artemis-4.0/diana/Entry.class artemis-4.0/diana/Entry$FeatureEnumerator.class artemis-4.0/diana/FeatureChangeListener.class artemis-4.0/diana/Selectable.class artemis-4.0/diana/FeatureEnumeration.class artemis-4.0/diana/Selection.class artemis-4.0/diana/EntryGroup.class artemis-4.0/diana/SimpleEntryGroup.class artemis-4.0/diana/SimpleEntryGroup$FeatureEnumerator.class artemis-4.0/diana/EntryVector.class artemis-4.0/diana/EntrySourceVector.class artemis-4.0/diana/EntrySource.class artemis-4.0/diana/ExternalProgramVector.class artemis-4.0/diana/ExternalSearchProgram.class artemis-4.0/diana/ExternalProgram.class artemis-4.0/diana/ExternalProgramException.class artemis-4.0/diana/ExternalApplication.class artemis-4.0/diana/GotoEventSource.class artemis-4.0/diana/SelectionChangeListener.class artemis-4.0/diana/GotoListener.class artemis-4.0/diana/SimpleGotoEventSource.class artemis-4.0/diana/GotoEvent.class artemis-4.0/diana/EntryGroupChangeEvent.class artemis-4.0/diana/ChangeEvent.class artemis-4.0/diana/EntryChangeEvent.class artemis-4.0/diana/FeatureVector.class artemis-4.0/diana/FeaturePredicate.class artemis-4.0/diana/Feature.class artemis-4.0/diana/LastSegmentException.class artemis-4.0/diana/FilteredEntryGroup.class artemis-4.0/diana/FilteredEntryGroup$1.class artemis-4.0/diana/FilteredEntryGroup$2.class artemis-4.0/diana/FilteredEntryGroup$3.class artemis-4.0/diana/FilteredEntryGroup$FeatureEnumerator.class artemis-4.0/diana/FeatureSegment.class artemis-4.0/diana/FeatureKeyQualifierPredicate.class artemis-4.0/diana/FeatureChangeEvent.class artemis-4.0/diana/FeatureKeyPredicate.class artemis-4.0/diana/FeatureFromVectorPredicate.class artemis-4.0/diana/FeatureSegmentVector.class artemis-4.0/diana/SelectionChangeEvent.class artemis-4.0/docs/CVS/Root artemis-4.0/docs/CVS/Repository artemis-4.0/docs/CVS/Entries artemis-4.0/docs/.cvsignore artemis-4.0/docs/Makefile artemis-4.0/docs/acknowledgements.sgml artemis-4.0/docs/act_display_menus.sgml artemis-4.0/docs/act_file_menu.sgml artemis-4.0/docs/act_intro_chapter.sgml artemis-4.0/docs/act_main_window.sgml artemis-4.0/docs/act_main_window_1.gif artemis-4.0/docs/act_main_window_2.gif artemis-4.0/docs/act_main_window_3.gif artemis-4.0/docs/act_main_window_4.gif artemis-4.0/docs/act_main_window_5.gif artemis-4.0/docs/act_manual.sgml artemis-4.0/docs/act_start_chapter.sgml artemis-4.0/docs/act_user_manual_screen_shot.gif artemis-4.0/docs/artemis.dsl artemis-4.0/docs/concepts.sgml artemis-4.0/docs/copyright.sgml artemis-4.0/docs/display_common.sgml artemis-4.0/docs/display_menu.sgml artemis-4.0/docs/feature_list.sgml artemis-4.0/docs/file_menu.sgml artemis-4.0/docs/getting_java.sgml artemis-4.0/docs/intro_chapter.sgml artemis-4.0/docs/main_window_1.gif artemis-4.0/docs/main_window_2.gif artemis-4.0/docs/main_window_3.gif artemis-4.0/docs/main_window_4.gif artemis-4.0/docs/main_window_5.gif artemis-4.0/docs/main_window_6.gif artemis-4.0/docs/main_window_chapter.sgml artemis-4.0/docs/manual.sgml artemis-4.0/docs/menus.sgml artemis-4.0/docs/mousebuttons.sgml artemis-4.0/docs/options.sgml artemis-4.0/docs/requirements.sgml artemis-4.0/docs/run_menu.sgml artemis-4.0/docs/start_chapter.sgml artemis-4.0/docs/unix_args.sgml artemis-4.0/docs/user_manual_screen_shot.gif artemis-4.0/docs/views_popup.sgml artemis-4.0/docs/views_scale.sgml artemis-4.0/docs/views_scrolling.sgml artemis-4.0/docs/views_selection.sgml artemis-4.0/embl/CVS/Root artemis-4.0/embl/CVS/Repository artemis-4.0/embl/CVS/Entries artemis-4.0/embl/.cvsignore artemis-4.0/etc/CVS/Root artemis-4.0/etc/CVS/Repository artemis-4.0/etc/CVS/Entries artemis-4.0/etc/c1215.embl artemis-4.0/etc/changes.shtml artemis-4.0/etc/feature_keys artemis-4.0/etc/options artemis-4.0/etc/pombe.usage artemis-4.0/etc/qualifier_types artemis-4.0/lib/CVS/Root artemis-4.0/lib/CVS/Repository artemis-4.0/lib/CVS/Entries artemis-4.0/lib/JacORB.jar artemis-4.0/uk/CVS/Root artemis-4.0/uk/CVS/Repository artemis-4.0/uk/CVS/Entries artemis-4.0/uk/ac/CVS/Root artemis-4.0/uk/ac/CVS/Repository artemis-4.0/uk/ac/CVS/Entries artemis-4.0/uk/ac/sanger/CVS/Root artemis-4.0/uk/ac/sanger/CVS/Repository artemis-4.0/uk/ac/sanger/CVS/Entries artemis-4.0/uk/ac/sanger/pathogens/CVS/Root artemis-4.0/uk/ac/sanger/pathogens/CVS/Repository artemis-4.0/uk/ac/sanger/pathogens/CVS/Entries artemis-4.0/uk/ac/sanger/pathogens/Document.java artemis-4.0/uk/ac/sanger/pathogens/FastVector.java artemis-4.0/uk/ac/sanger/pathogens/FileDocument.java artemis-4.0/uk/ac/sanger/pathogens/FileProgressDocument.java artemis-4.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.java artemis-4.0/uk/ac/sanger/pathogens/InputStreamProgressListener.java artemis-4.0/uk/ac/sanger/pathogens/OutOfRangeException.java artemis-4.0/uk/ac/sanger/pathogens/ProgressInputStream.java artemis-4.0/uk/ac/sanger/pathogens/ReadOnlyException.java artemis-4.0/uk/ac/sanger/pathogens/StringVector.java artemis-4.0/uk/ac/sanger/pathogens/URLDocument.java artemis-4.0/uk/ac/sanger/pathogens/embl/CVS/Root artemis-4.0/uk/ac/sanger/pathogens/embl/CVS/Repository artemis-4.0/uk/ac/sanger/pathogens/embl/CVS/Entries artemis-4.0/uk/ac/sanger/pathogens/embl/BetweenRange.java artemis-4.0/uk/ac/sanger/pathogens/embl/ComparableFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/CorbaEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/CorbaFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/CorbaSequence.java artemis-4.0/uk/ac/sanger/pathogens/embl/DateStampFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.java artemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.java artemis-4.0/uk/ac/sanger/pathogens/embl/DocumentFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/EMBLObject.java artemis-4.0/uk/ac/sanger/pathogens/embl/Entry.java artemis-4.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/EmblMisc.java artemis-4.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.java artemis-4.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaSequence.java artemis-4.0/uk/ac/sanger/pathogens/embl/EntryInformation.java artemis-4.0/uk/ac/sanger/pathogens/embl/EntryInformationException.java artemis-4.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.java artemis-4.0/uk/ac/sanger/pathogens/embl/Feature.java artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureComparator.java artemis-4.0/uk/ac/sanger/pathogens/embl/Key.java artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.java artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureHeader.java artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTable.java artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTree.java artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureVector.java artemis-4.0/uk/ac/sanger/pathogens/embl/FuzzyRange.java artemis-4.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/GFFMisc.java artemis-4.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.java artemis-4.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/GenbankMisc.java artemis-4.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.java artemis-4.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.java artemis-4.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.java artemis-4.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.java artemis-4.0/uk/ac/sanger/pathogens/embl/KeyVector.java artemis-4.0/uk/ac/sanger/pathogens/embl/LineGroup.java artemis-4.0/uk/ac/sanger/pathogens/embl/LineGroupVector.java artemis-4.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.java artemis-4.0/uk/ac/sanger/pathogens/embl/Location.java artemis-4.0/uk/ac/sanger/pathogens/embl/LocationLexer.java artemis-4.0/uk/ac/sanger/pathogens/embl/Qualifier.java artemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseException.java artemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseNode.java artemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.java artemis-4.0/uk/ac/sanger/pathogens/embl/LowerInteger.java artemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.java artemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.java artemis-4.0/uk/ac/sanger/pathogens/embl/OutOfDateException.java artemis-4.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/PushBackException.java artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfo.java artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.java artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.java artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierParseException.java artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierVector.java artemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/Range.java artemis-4.0/uk/ac/sanger/pathogens/embl/RangeVector.java artemis-4.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.java artemis-4.0/uk/ac/sanger/pathogens/embl/ReadFormatException.java artemis-4.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/Sequence.java artemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.java artemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.java artemis-4.0/uk/ac/sanger/pathogens/embl/StreamFeature.java artemis-4.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.java artemis-4.0/uk/ac/sanger/pathogens/embl/StreamQualifier.java artemis-4.0/uk/ac/sanger/pathogens/embl/StreamSequence.java artemis-4.0/uk/ac/sanger/pathogens/embl/UpperInteger.java artemis-4.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.java artemis-4.0/uk/ac/sanger/pathogens/embl/embl.example artemis-4.0/uk/ac/sanger/pathogens/embl/Key.class artemis-4.0/uk/ac/sanger/pathogens/embl/KeyVector.class artemis-4.0/uk/ac/sanger/pathogens/embl/EntryInformation.class artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.class artemis-4.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.class artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfo.class artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.class artemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.class artemis-4.0/uk/ac/sanger/pathogens/embl/EntryInformationException.class artemis-4.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.class artemis-4.0/uk/ac/sanger/pathogens/embl/Entry.class artemis-4.0/uk/ac/sanger/pathogens/embl/ReadFormatException.class artemis-4.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.class artemis-4.0/uk/ac/sanger/pathogens/embl/Qualifier.class artemis-4.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.class artemis-4.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/DocumentFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/StreamFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/ComparableFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/LineGroup.class artemis-4.0/uk/ac/sanger/pathogens/embl/Feature.class artemis-4.0/uk/ac/sanger/pathogens/embl/EMBLObject.class artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierParseException.class artemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/Range.class artemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry$1.class artemis-4.0/uk/ac/sanger/pathogens/embl/RangeVector.class artemis-4.0/uk/ac/sanger/pathogens/embl/Location.class artemis-4.0/uk/ac/sanger/pathogens/embl/LocationLexer.class artemis-4.0/uk/ac/sanger/pathogens/embl/LocationLexer$TokenEnumeration.class artemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseException.class artemis-4.0/uk/ac/sanger/pathogens/embl/QualifierVector.class artemis-4.0/uk/ac/sanger/pathogens/embl/Sequence.class artemis-4.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.class artemis-4.0/uk/ac/sanger/pathogens/embl/StreamSequence.class artemis-4.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.class artemis-4.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.class artemis-4.0/uk/ac/sanger/pathogens/embl/StreamQualifier.class artemis-4.0/uk/ac/sanger/pathogens/embl/OutOfDateException.class artemis-4.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.class artemis-4.0/uk/ac/sanger/pathogens/embl/PushBackException.class artemis-4.0/uk/ac/sanger/pathogens/embl/DateStampFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/FuzzyRange.class artemis-4.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.class artemis-4.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.class artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureHeader.class artemis-4.0/uk/ac/sanger/pathogens/embl/EmblMisc.class artemis-4.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.class artemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/GenbankMisc.class artemis-4.0/uk/ac/sanger/pathogens/embl/GFFMisc.class artemis-4.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureVector.class artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.class artemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseNode.class artemis-4.0/uk/ac/sanger/pathogens/embl/LineGroupVector.class artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTable.class artemis-4.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.class artemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.class artemis-4.0/uk/ac/sanger/pathogens/embl/LowerInteger.class artemis-4.0/uk/ac/sanger/pathogens/embl/UpperInteger.class artemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.class artemis-4.0/uk/ac/sanger/pathogens/embl/BetweenRange.class artemis-4.0/uk/ac/sanger/pathogens/embl/CorbaEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.class artemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry$1.class artemis-4.0/uk/ac/sanger/pathogens/embl/NucFeatureHasher.class artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTree.class artemis-4.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.class artemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.class artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTree$FeatureEnumerator.class artemis-4.0/uk/ac/sanger/pathogens/embl/FeatureComparator.class artemis-4.0/uk/ac/sanger/pathogens/embl/CorbaSequence.class artemis-4.0/uk/ac/sanger/pathogens/embl/CorbaFeature.class artemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.class artemis-4.0/uk/ac/sanger/pathogens/OutOfRangeException.class artemis-4.0/uk/ac/sanger/pathogens/ReadOnlyException.class artemis-4.0/uk/ac/sanger/pathogens/StringVector.class artemis-4.0/uk/ac/sanger/pathogens/InputStreamProgressListener.class artemis-4.0/uk/ac/sanger/pathogens/StringVector$1.class artemis-4.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.class artemis-4.0/uk/ac/sanger/pathogens/Document.class artemis-4.0/uk/ac/sanger/pathogens/FileDocument.class artemis-4.0/uk/ac/sanger/pathogens/FastVector.class artemis-4.0/uk/ac/sanger/pathogens/FileProgressDocument.class artemis-4.0/uk/ac/sanger/pathogens/ProgressInputStream.class artemis-4.0/type/stringListHolder.java artemis-4.0/type/stringListHelper.java artemis-4.0/type/longListHolder.java artemis-4.0/type/longListHelper.java artemis-4.0/type/ulongListHolder.java artemis-4.0/type/ulongListHelper.java artemis-4.0/type/NoResult.java artemis-4.0/type/NoResultHolder.java artemis-4.0/type/NoResultHelper.java artemis-4.0/type/NoWritePermission.java artemis-4.0/type/NoWritePermissionHolder.java artemis-4.0/type/NoWritePermissionHelper.java artemis-4.0/type/InvalidRelation.java artemis-4.0/type/InvalidRelationHolder.java artemis-4.0/type/InvalidRelationHelper.java artemis-4.0/type/IndexOutOfRange.java artemis-4.0/type/IndexOutOfRangeHolder.java artemis-4.0/type/IndexOutOfRangeHelper.java artemis-4.0/type/InvalidArgumentValue.java artemis-4.0/type/InvalidArgumentValueHolder.java artemis-4.0/type/InvalidArgumentValueHelper.java artemis-4.0/type/ParseError.java artemis-4.0/type/ParseErrorHolder.java artemis-4.0/type/ParseErrorHelper.java artemis-4.0/type/Date.java artemis-4.0/type/DateHolder.java artemis-4.0/type/DateHelper.java artemis-4.0/type/DateListHolder.java artemis-4.0/type/DateListHelper.java artemis-4.0/type/Person.java artemis-4.0/type/PersonHolder.java artemis-4.0/type/PersonHelper.java artemis-4.0/type/PersonListHolder.java artemis-4.0/type/PersonListHelper.java artemis-4.0/type/Revision.java artemis-4.0/type/RevisionHolder.java artemis-4.0/type/RevisionHelper.java artemis-4.0/type/RevisionListHolder.java artemis-4.0/type/RevisionListHelper.java artemis-4.0/type/DbXref.java artemis-4.0/type/DbXrefHolder.java artemis-4.0/type/DbXrefHelper.java artemis-4.0/type/DbXrefListHolder.java artemis-4.0/type/DbXrefListHelper.java artemis-4.0/type/AminoAcid.java artemis-4.0/type/AminoAcidHolder.java artemis-4.0/type/AminoAcidHelper.java artemis-4.0/type/AminoAcidListHolder.java artemis-4.0/type/AminoAcidListHelper.java artemis-4.0/type/CodonTranslation.java artemis-4.0/type/CodonTranslationHolder.java artemis-4.0/type/CodonTranslationHelper.java artemis-4.0/type/CodonTranslationListHolder.java artemis-4.0/type/CodonTranslationListHelper.java artemis-4.0/type/AntiCodon.java artemis-4.0/type/AntiCodonHolder.java artemis-4.0/type/AntiCodonHelper.java artemis-4.0/type/AntiCodonListHolder.java artemis-4.0/type/AntiCodonListHelper.java artemis-4.0/type/TranslationException.java artemis-4.0/type/TranslationExceptionHolder.java artemis-4.0/type/TranslationExceptionHelper.java artemis-4.0/type/RepeatUnit.java artemis-4.0/type/Exact_ftc.java artemis-4.0/type/TranslationExceptionListHolder.java artemis-4.0/type/TranslationExceptionListHelper.java artemis-4.0/type/SpliceConsensus.java artemis-4.0/type/SpliceConsensusHolder.java artemis-4.0/type/SpliceConsensusHelper.java artemis-4.0/type/SpliceConsensusListHolder.java artemis-4.0/type/SpliceConsensusListHelper.java artemis-4.0/type/RepeatUnitHolder.java artemis-4.0/type/RepeatUnitHelper.java artemis-4.0/type/RepeatUnitListHolder.java artemis-4.0/type/RepeatUnitListHelper.java artemis-4.0/type/FuzzyTypeCodeHelper.java artemis-4.0/type/In_ftc.java artemis-4.0/type/Between_ftc.java artemis-4.0/type/Less_ftc.java artemis-4.0/type/Greater_ftc.java artemis-4.0/type/Fuzzy.java artemis-4.0/type/FuzzyHolder.java artemis-4.0/type/FuzzyHelper.java artemis-4.0/type/FuzzyListHolder.java artemis-4.0/type/FuzzyListHelper.java artemis-4.0/type/NoResult.class artemis-4.0/type/InvalidRelation.class artemis-4.0/type/InvalidArgumentValue.class artemis-4.0/type/IndexOutOfRange.class artemis-4.0/type/DbXref.class artemis-4.0/type/Revision.class artemis-4.0/type/InvalidRelationHelper.class artemis-4.0/type/InvalidArgumentValueHelper.class artemis-4.0/type/IndexOutOfRangeHelper.class artemis-4.0/type/Date.class artemis-4.0/type/stringListHelper.class artemis-4.0/type/NoResultHelper.class artemis-4.0/type/TranslationException.class artemis-4.0/type/CodonTranslation.class artemis-4.0/type/AntiCodon.class artemis-4.0/type/SpliceConsensus.class artemis-4.0/type/RepeatUnit.class artemis-4.0/type/Fuzzy.class artemis-4.0/type/AminoAcid.class artemis-4.0/type/DbXrefListHelper.class artemis-4.0/type/RevisionListHelper.class artemis-4.0/type/DbXrefHelper.class artemis-4.0/type/RevisionHelper.class artemis-4.0/type/DateHelper.class artemis-4.0/type/RepeatUnitHelper.class artemis-4.0/type/SpliceConsensusHelper.class artemis-4.0/type/AntiCodonHelper.class artemis-4.0/type/CodonTranslationHelper.class artemis-4.0/type/AminoAcidHelper.class artemis-4.0/type/TranslationExceptionHelper.class artemis-4.0/type/FuzzyHelper.class artemis-4.0/nsdb/NucSeqListHolder.java artemis-4.0/nsdb/NucSeqListHelper.java artemis-4.0/nsdb/NucFeatureListHolder.java artemis-4.0/nsdb/NucFeatureListHelper.java artemis-4.0/nsdb/LocationListHolder.java artemis-4.0/nsdb/LocationListHelper.java artemis-4.0/nsdb/FeatureLocationListHolder.java artemis-4.0/nsdb/FeatureLocationListHelper.java artemis-4.0/nsdb/EntryInfoListHolder.java artemis-4.0/nsdb/EntryInfoListHelper.java artemis-4.0/nsdb/InexactLocation.java artemis-4.0/nsdb/InexactLocationHolder.java artemis-4.0/nsdb/InexactLocationHelper.java artemis-4.0/nsdb/EntryInfo.java artemis-4.0/nsdb/EntryInfoOperations.java artemis-4.0/nsdb/EntryInfoHelper.java artemis-4.0/nsdb/EntryInfoHolder.java artemis-4.0/nsdb/_EntryInfoStub.java artemis-4.0/nsdb/EntryInfoPOA.java artemis-4.0/nsdb/EntryInfoPOATie.java artemis-4.0/nsdb/Location.java artemis-4.0/nsdb/LocationOperations.java artemis-4.0/nsdb/LocationHelper.java artemis-4.0/nsdb/LocationHolder.java artemis-4.0/nsdb/_LocationStub.java artemis-4.0/nsdb/LocationPOA.java artemis-4.0/nsdb/LocationPOATie.java artemis-4.0/nsdb/LocationPackage/IdListHolder.java artemis-4.0/nsdb/LocationPackage/IdListHelper.java artemis-4.0/nsdb/LocationPackage/LocNodeTypeCodeHelper.java artemis-4.0/nsdb/LocationPackage/LocVirtualSegment.java artemis-4.0/nsdb/LocationPackage/LocVirtualSegmentHolder.java artemis-4.0/nsdb/LocationPackage/LocVirtualSegmentHelper.java artemis-4.0/nsdb/LocationPackage/LocGapHolder.java artemis-4.0/nsdb/LocationPackage/LocGapHelper.java artemis-4.0/nsdb/LocationPackage/LocPhysicalSegmentHolder.java artemis-4.0/nsdb/LocationPackage/LocPhysicalSegmentHelper.java artemis-4.0/nsdb/LocationPackage/LocOperator.java artemis-4.0/nsdb/LocationPackage/LocOperatorHolder.java artemis-4.0/nsdb/LocationPackage/LocOperatorHelper.java artemis-4.0/nsdb/LocationPackage/LocationNode_u.java artemis-4.0/nsdb/LocationPackage/LocOperator.class artemis-4.0/nsdb/LocationPackage/LocationNode_uHolder.java artemis-4.0/nsdb/LocationPackage/LocationNode_uHelper.java artemis-4.0/nsdb/LocationPackage/LocationNodeListHolder.java artemis-4.0/nsdb/LocationPackage/LocationNodeListHelper.java artemis-4.0/nsdb/LocationPackage/LocationNode_u.class artemis-4.0/nsdb/LocationPackage/LocVirtualSegment.class artemis-4.0/nsdb/LocationPackage/LocationNodeListHelper.class artemis-4.0/nsdb/LocationPackage/LocationNode_uHelper.class artemis-4.0/nsdb/LocationPackage/LocOperatorHelper.class artemis-4.0/nsdb/LocationPackage/LocGapHelper.class artemis-4.0/nsdb/LocationPackage/LocPhysicalSegmentHelper.class artemis-4.0/nsdb/LocationPackage/LocVirtualSegmentHelper.class artemis-4.0/nsdb/LocationPackage/IdListHelper.class artemis-4.0/nsdb/FeatureLocation.java artemis-4.0/nsdb/FeatureLocationOperations.java artemis-4.0/nsdb/FeatureLocationPOA.java artemis-4.0/nsdb/FeatureLocationHelper.java artemis-4.0/nsdb/FeatureLocationHolder.java artemis-4.0/nsdb/_FeatureLocationStub.java artemis-4.0/nsdb/FeatureLocationPOATie.java artemis-4.0/nsdb/NucFeature.java artemis-4.0/nsdb/NucFeaturePOA.java artemis-4.0/nsdb/NucFeatureOperations.java artemis-4.0/nsdb/NucFeatureHelper.java artemis-4.0/nsdb/NucFeatureHolder.java artemis-4.0/nsdb/_NucFeatureStub.java artemis-4.0/nsdb/NucFeaturePOATie.java artemis-4.0/nsdb/NucFeaturePackage/QualifierTypeCodeHelper.java artemis-4.0/nsdb/NucFeaturePackage/QualifierValue_u.java artemis-4.0/nsdb/NucFeaturePackage/QualifierValue_uHolder.java artemis-4.0/nsdb/NucFeaturePackage/QualifierValue_uHelper.java artemis-4.0/nsdb/NucFeaturePackage/QualifierValueListHolder.java artemis-4.0/nsdb/NucFeaturePackage/QualifierValueListHelper.java artemis-4.0/nsdb/NucFeaturePackage/Qualifier.java artemis-4.0/nsdb/NucFeaturePackage/QualifierHolder.java artemis-4.0/nsdb/NucFeaturePackage/QualifierHelper.java artemis-4.0/nsdb/NucFeaturePackage/QualifierListHolder.java artemis-4.0/nsdb/NucFeaturePackage/QualifierListHelper.java artemis-4.0/nsdb/NucFeaturePackage/Qualifier.class artemis-4.0/nsdb/NucFeaturePackage/QualifierValue_u.class artemis-4.0/nsdb/NucFeaturePackage/QualifierListHelper.class artemis-4.0/nsdb/NucFeaturePackage/QualifierHelper.class artemis-4.0/nsdb/NucFeaturePackage/QualifierValue_uHelper.class artemis-4.0/nsdb/NucFeaturePackage/QualifierValueListHelper.class artemis-4.0/nsdb/NucSeq.java artemis-4.0/nsdb/NucSeqOperations.java artemis-4.0/nsdb/NucSeqHelper.java artemis-4.0/nsdb/NucSeqHolder.java artemis-4.0/nsdb/_NucSeqStub.java artemis-4.0/nsdb/NucSeqPOA.java artemis-4.0/nsdb/NucSeqPOATie.java artemis-4.0/nsdb/Embl.java artemis-4.0/nsdb/EmblSeq.java artemis-4.0/nsdb/EmblSeqOperations.java artemis-4.0/nsdb/EmblSeqHelper.java artemis-4.0/nsdb/EmblSeqHolder.java artemis-4.0/nsdb/_EmblSeqStub.java artemis-4.0/nsdb/EmblSeqPOA.java artemis-4.0/nsdb/EmblSeqPOATie.java artemis-4.0/nsdb/EmblOperations.java artemis-4.0/nsdb/EmblHelper.java artemis-4.0/nsdb/EmblHolder.java artemis-4.0/nsdb/_EmblStub.java artemis-4.0/nsdb/EmblPOA.java artemis-4.0/nsdb/EmblPOATie.java artemis-4.0/nsdb/EmblPackage/Superceded.java artemis-4.0/nsdb/EmblPackage/SupercededHolder.java artemis-4.0/nsdb/EmblPackage/SupercededHelper.java artemis-4.0/nsdb/EmblPackage/Superceded.class artemis-4.0/nsdb/EmblPackage/SupercededHelper.class artemis-4.0/nsdb/OutOfDate.java artemis-4.0/nsdb/LocationParse.java artemis-4.0/nsdb/OutOfDateHolder.java artemis-4.0/nsdb/OutOfDateHelper.java artemis-4.0/nsdb/ReadOnlyException.java artemis-4.0/nsdb/ReadOnlyExceptionHolder.java artemis-4.0/nsdb/ReadOnlyExceptionHelper.java artemis-4.0/nsdb/LocationParseHolder.java artemis-4.0/nsdb/LocationParseHelper.java artemis-4.0/nsdb/QualifierParse.java artemis-4.0/nsdb/QualifierParseHolder.java artemis-4.0/nsdb/QualifierParseHelper.java artemis-4.0/nsdb/InvalidQualifier.java artemis-4.0/nsdb/InvalidQualifierHolder.java artemis-4.0/nsdb/InvalidQualifierHelper.java artemis-4.0/nsdb/NucFeatureWriterListHolder.java artemis-4.0/nsdb/NucFeatureWriterListHelper.java artemis-4.0/nsdb/datestamp_tHelper.java artemis-4.0/nsdb/Datestamp.java artemis-4.0/nsdb/DatestampHolder.java artemis-4.0/nsdb/DatestampHelper.java artemis-4.0/nsdb/EntryStats.java artemis-4.0/nsdb/EntryStatsHolder.java artemis-4.0/nsdb/EntryStatsHelper.java artemis-4.0/nsdb/ServerInfo.java artemis-4.0/nsdb/EmblWriter.java artemis-4.0/nsdb/ServerInfoHolder.java artemis-4.0/nsdb/ServerInfoHelper.java artemis-4.0/nsdb/EmblWriterOperations.java artemis-4.0/nsdb/EmblWriterHelper.java artemis-4.0/nsdb/EmblWriterHolder.java artemis-4.0/nsdb/_EmblWriterStub.java artemis-4.0/nsdb/EmblWriterPOA.java artemis-4.0/nsdb/EmblWriterPOATie.java artemis-4.0/nsdb/InvalidKey.java artemis-4.0/nsdb/InvalidKeyHolder.java artemis-4.0/nsdb/InvalidKeyHelper.java artemis-4.0/nsdb/CommitFailed.java artemis-4.0/nsdb/CommitFailedHolder.java artemis-4.0/nsdb/CommitFailedHelper.java artemis-4.0/nsdb/EmblSeqWriter.java artemis-4.0/nsdb/EmblSeqWriterOperations.java artemis-4.0/nsdb/EmblSeqWriterHelper.java artemis-4.0/nsdb/EmblSeqWriterHolder.java artemis-4.0/nsdb/_EmblSeqWriterStub.java artemis-4.0/nsdb/EmblSeqWriterPOA.java artemis-4.0/nsdb/EmblSeqWriterPOATie.java artemis-4.0/nsdb/NucFeatureWriter.java artemis-4.0/nsdb/NucFeatureWriterOperations.java artemis-4.0/nsdb/Embl.class artemis-4.0/nsdb/NucFeatureWriterHelper.java artemis-4.0/nsdb/NucFeatureWriterHolder.java artemis-4.0/nsdb/_NucFeatureWriterStub.java artemis-4.0/nsdb/NucFeatureWriterPOA.java artemis-4.0/nsdb/NucFeatureWriterPOATie.java artemis-4.0/nsdb/EmblSeq.class artemis-4.0/nsdb/EmblSeqOperations.class artemis-4.0/nsdb/NucSeq.class artemis-4.0/nsdb/EntryInfo.class artemis-4.0/nsdb/NucSeqOperations.class artemis-4.0/nsdb/EntryInfoOperations.class artemis-4.0/nsdb/InexactLocation.class artemis-4.0/nsdb/ServerInfo.class artemis-4.0/nsdb/EntryStats.class artemis-4.0/nsdb/EmblOperations.class artemis-4.0/nsdb/EmblWriter.class artemis-4.0/nsdb/EmblWriterOperations.class artemis-4.0/nsdb/EmblWriterHelper.class artemis-4.0/nsdb/NucFeature.class artemis-4.0/nsdb/NucFeatureOperations.class artemis-4.0/nsdb/EmblSeqWriter.class artemis-4.0/nsdb/EmblSeqWriterOperations.class artemis-4.0/nsdb/LocationParse.class artemis-4.0/nsdb/InvalidKey.class artemis-4.0/nsdb/ReadOnlyException.class artemis-4.0/nsdb/CommitFailed.class artemis-4.0/nsdb/NucFeatureWriter.class artemis-4.0/nsdb/NucFeatureWriterOperations.class artemis-4.0/nsdb/QualifierParse.class artemis-4.0/nsdb/InvalidQualifier.class artemis-4.0/nsdb/OutOfDate.class artemis-4.0/nsdb/EmblHelper.class artemis-4.0/nsdb/Location.class artemis-4.0/nsdb/LocationOperations.class artemis-4.0/nsdb/InexactLocationHelper.class artemis-4.0/nsdb/_EmblWriterStub.class artemis-4.0/nsdb/FeatureLocation.class artemis-4.0/nsdb/FeatureLocationOperations.class artemis-4.0/nsdb/Datestamp.class artemis-4.0/nsdb/_EmblStub.class artemis-4.0/nsdb/LocationParseHelper.class artemis-4.0/nsdb/CommitFailedHelper.class artemis-4.0/nsdb/EmblSeqWriterHelper.class artemis-4.0/nsdb/NucFeatureWriterHelper.class artemis-4.0/nsdb/QualifierParseHelper.class artemis-4.0/nsdb/ServerInfoHelper.class artemis-4.0/nsdb/EmblSeqHelper.class artemis-4.0/nsdb/_EmblSeqWriterStub.class artemis-4.0/nsdb/_NucFeatureWriterStub.class artemis-4.0/nsdb/EntryStatsHelper.class artemis-4.0/nsdb/_EmblSeqStub.class artemis-4.0/nsdb/NucFeatureListHelper.class artemis-4.0/nsdb/DatestampHelper.class artemis-4.0/nsdb/NucFeatureHelper.class artemis-4.0/nsdb/ReadOnlyExceptionHelper.class artemis-4.0/nsdb/LocationHelper.class artemis-4.0/nsdb/InvalidKeyHelper.class artemis-4.0/nsdb/InvalidQualifierHelper.class artemis-4.0/nsdb/OutOfDateHelper.class artemis-4.0/nsdb/FeatureLocationHelper.class artemis-4.0/nsdb/_NucFeatureStub.class artemis-4.0/nsdb/_LocationStub.class artemis-4.0/nsdb/_FeatureLocationStub.class artemis-4.0/seqdb/BioSeq.java artemis-4.0/seqdb/BioSeqOperations.java artemis-4.0/seqdb/BioSeqHelper.java artemis-4.0/seqdb/BioSeqHolder.java artemis-4.0/seqdb/_BioSeqStub.java artemis-4.0/seqdb/BioSeqPOA.java artemis-4.0/seqdb/BioSeqPOATie.java artemis-4.0/seqdb/Feature.java artemis-4.0/seqdb/FeatureOperations.java artemis-4.0/seqdb/FeatureHelper.java artemis-4.0/seqdb/FeatureHolder.java artemis-4.0/seqdb/_FeatureStub.java artemis-4.0/seqdb/FeaturePOA.java artemis-4.0/seqdb/FeaturePOATie.java artemis-4.0/seqdb/SeqInfo.java artemis-4.0/seqdb/SeqInfoOperations.java artemis-4.0/seqdb/SeqInfoHelper.java artemis-4.0/seqdb/SeqInfoPOA.java artemis-4.0/seqdb/SeqInfoHolder.java artemis-4.0/seqdb/_SeqInfoStub.java artemis-4.0/seqdb/SeqInfoPOATie.java artemis-4.0/seqdb/SeqInfo.class artemis-4.0/seqdb/SeqInfoOperations.class artemis-4.0/seqdb/BioSeqOperations.class artemis-4.0/seqdb/BioSeq.class artemis-4.0/seqdb/Feature.class artemis-4.0/seqdb/FeatureOperations.class artemis-4.0/Ensembl/artemis/RequestedSequenceTooLong.java artemis-4.0/Ensembl/artemis/RequestedSequenceTooLongHolder.java artemis-4.0/Ensembl/artemis/RequestedSequenceTooLongHelper.java artemis-4.0/Ensembl/artemis/NoEntry.java artemis-4.0/Ensembl/artemis/NoEntryHolder.java artemis-4.0/Ensembl/artemis/NoEntryHelper.java artemis-4.0/Ensembl/artemis/BioSequence.java artemis-4.0/Ensembl/artemis/BioSequenceOperations.java artemis-4.0/Ensembl/artemis/BioSequenceHelper.java artemis-4.0/Ensembl/artemis/BioSequenceHolder.java artemis-4.0/Ensembl/artemis/_BioSequenceStub.java artemis-4.0/Ensembl/artemis/BioSequencePOA.java artemis-4.0/Ensembl/artemis/BioSequencePOATie.java artemis-4.0/Ensembl/artemis/Qualifier.java artemis-4.0/Ensembl/artemis/QualifierHolder.java artemis-4.0/Ensembl/artemis/QualifierHelper.java artemis-4.0/Ensembl/artemis/QualifierListHolder.java artemis-4.0/Ensembl/artemis/QualifierListHelper.java artemis-4.0/Ensembl/artemis/Feature.java artemis-4.0/Ensembl/artemis/FeatureOperations.java artemis-4.0/Ensembl/artemis/FeatureHelper.java artemis-4.0/Ensembl/artemis/FeatureHolder.java artemis-4.0/Ensembl/artemis/_FeatureStub.java artemis-4.0/Ensembl/artemis/FeaturePOA.java artemis-4.0/Ensembl/artemis/DB.java artemis-4.0/Ensembl/artemis/FeaturePOATie.java artemis-4.0/Ensembl/artemis/FeatureListHolder.java artemis-4.0/Ensembl/artemis/FeatureListHelper.java artemis-4.0/Ensembl/artemis/Entry.java artemis-4.0/Ensembl/artemis/EntryOperations.java artemis-4.0/Ensembl/artemis/EntryHelper.java artemis-4.0/Ensembl/artemis/EntryHolder.java artemis-4.0/Ensembl/artemis/_EntryStub.java artemis-4.0/Ensembl/artemis/EntryPOA.java artemis-4.0/Ensembl/artemis/EntryPOATie.java artemis-4.0/Ensembl/artemis/QualifierDefinitionListHolder.java artemis-4.0/Ensembl/artemis/QualifierDefinitionListHelper.java artemis-4.0/Ensembl/artemis/FeatureDefinition.java artemis-4.0/Ensembl/artemis/FeatureDefinitionHolder.java artemis-4.0/Ensembl/artemis/FeatureDefinitionHelper.java artemis-4.0/Ensembl/artemis/FeatureDefinitionListHolder.java artemis-4.0/Ensembl/artemis/FeatureDefinitionListHelper.java artemis-4.0/Ensembl/artemis/EntryNameListHolder.java artemis-4.0/Ensembl/artemis/EntryNameListHelper.java artemis-4.0/Ensembl/artemis/DBOperations.java artemis-4.0/Ensembl/artemis/DBHelper.java artemis-4.0/Ensembl/artemis/DBHolder.java artemis-4.0/Ensembl/artemis/_DBStub.java artemis-4.0/Ensembl/artemis/DBPOA.java artemis-4.0/Ensembl/artemis/DBPOATie.java artemis-4.0/Diana.class artemis-4.0/AppGlobal.class bin/art @dirrm artemis-4.0/META-INF/CVS @dirrm artemis-4.0/META-INF @dirrm artemis-4.0/collections/CVS @dirrm artemis-4.0/collections @dirrm artemis-4.0/corba/CVS @dirrm artemis-4.0/corba @dirrm artemis-4.0/diana/CVS @dirrm artemis-4.0/diana/plot/CVS @dirrm artemis-4.0/diana/plot @dirrm artemis-4.0/diana/components/CVS @dirrm artemis-4.0/diana/components @dirrm artemis-4.0/diana/sequence/CVS @dirrm artemis-4.0/diana/sequence @dirrm artemis-4.0/diana @dirrm artemis-4.0/docs/CVS @dirrm artemis-4.0/docs @dirrm artemis-4.0/embl/CVS @dirrm artemis-4.0/embl @dirrm artemis-4.0/etc/CVS @dirrm artemis-4.0/etc @dirrm artemis-4.0/lib/CVS @dirrm artemis-4.0/lib @dirrm artemis-4.0/uk/CVS @dirrm artemis-4.0/uk/ac/sanger/CVS @dirrm artemis-4.0/uk/ac/sanger/pathogens/CVS @dirrm artemis-4.0/uk/ac/sanger/pathogens/embl/CVS @dirrm artemis-4.0/uk/ac/sanger/pathogens/embl @dirrm artemis-4.0/uk/ac/sanger/pathogens @dirrm artemis-4.0/uk/ac/CVS @dirrm artemis-4.0/uk/ac/sanger @dirrm artemis-4.0/uk/ac @dirrm artemis-4.0/uk @dirrm artemis-4.0/type @dirrm artemis-4.0/nsdb/LocationPackage @dirrm artemis-4.0/nsdb/NucFeaturePackage @dirrm artemis-4.0/nsdb/EmblPackage @dirrm artemis-4.0/nsdb @dirrm artemis-4.0/seqdb @dirrm artemis-4.0/Ensembl/artemis @dirrm artemis-4.0/Ensembl @dirrm artemis-4.0/CVS @dirrm artemis-4.0