From 77daf87099d085bed5b9ce9f9caeb485b7e6607c Mon Sep 17 00:00:00 2001 From: "Vanilla I. Shu" Date: Sun, 21 Dec 1997 21:57:37 +0000 Subject: This is a port of a molecular file format converter, babel. Babel is developed by Dolata Group, Department of Chemistry, University of Arizona and Ohio State University. PR: ports/5215 Submitted by: Frank Chen Hsiung Chan --- biology/babel/Makefile | 19 +++++++++++++++++++ biology/babel/distinfo | 1 + biology/babel/files/patch-aa | 24 ++++++++++++++++++++++++ biology/babel/files/patch-ab | 37 +++++++++++++++++++++++++++++++++++++ biology/babel/pkg-comment | 1 + biology/babel/pkg-descr | 6 ++++++ biology/babel/pkg-plist | 7 +++++++ 7 files changed, 95 insertions(+) create mode 100644 biology/babel/Makefile create mode 100644 biology/babel/distinfo create mode 100644 biology/babel/files/patch-aa create mode 100644 biology/babel/files/patch-ab create mode 100644 biology/babel/pkg-comment create mode 100644 biology/babel/pkg-descr create mode 100644 biology/babel/pkg-plist diff --git a/biology/babel/Makefile b/biology/babel/Makefile new file mode 100644 index 000000000000..c6346cd588a3 --- /dev/null +++ b/biology/babel/Makefile @@ -0,0 +1,19 @@ +# New ports collection Makefile for: babel +# Version required: 1.6 +# Date created: Dec 4 1997 +# Whom: frankch@waru.life.nthu.edu.tw +# +# $Id$ +# + +DISTNAME= babel-1.6 +CATEGORIES= biology +MASTER_SITES= ftp://ccl.osc.edu/pub/chemistry/software/MAC/babel/ +EXTRACT_SUFX= .tar.Z + +MAINTAINER= frankch@waru.life.nthu.edu.tw + +post-install: + @ ${CAT} ${PKGDIR}/INSTALL + +.include diff --git a/biology/babel/distinfo b/biology/babel/distinfo new file mode 100644 index 000000000000..bcd232fdeacb --- /dev/null +++ b/biology/babel/distinfo @@ -0,0 +1 @@ +MD5 (babel-1.6.tar.Z) = 101a5dc4858ecacac123571db52b272e diff --git a/biology/babel/files/patch-aa b/biology/babel/files/patch-aa new file mode 100644 index 000000000000..2cbbdf919829 --- /dev/null +++ b/biology/babel/files/patch-aa @@ -0,0 +1,24 @@ +--- Makefile.orig Tue Jan 21 23:53:05 1997 ++++ Makefile Sat Dec 20 05:12:51 1997 +@@ -1,6 +1,6 @@ +-CFLAGS = -O ++DEST = /usr/local/share/babel + +-LIBFLAGS = -O -DLIBRARY ++LIBFLAGS = -DLIBRARY + + CC = cc + +@@ -334,7 +334,11 @@ + index:; ctags -wx $(HDRS) $(SRCS) + + install: $(PROGRAM) +- install -s $(PROGRAM) $(DEST) ++ install -s $(PROGRAM) /usr/local/bin/$(PROGRAM) ++ install -d -o bin -g bin $(DEST) ++ install -c -o bin -g bin README.1ST $(DEST) ++ install -c -o bin -g bin element.lis new.lis $(DEST) ++ install -c -o bin -g bin quanta.lis types.lis $(DEST) + + print:; $(PRINT) $(HDRS) $(SRCS) + diff --git a/biology/babel/files/patch-ab b/biology/babel/files/patch-ab new file mode 100644 index 000000000000..4770277b67e8 --- /dev/null +++ b/biology/babel/files/patch-ab @@ -0,0 +1,37 @@ +--- menus.c.orig Thu Dec 4 20:20:28 1997 ++++ menus.c Thu Dec 4 20:21:46 1997 +@@ -63,9 +63,9 @@ + } + } + printf("Input file name : "); +- gets(InfileName); ++ fgets(InfileName, BUFF_SIZE - 1, stdin); + printf("Keywords : "); +- gets(InputKeywords); ++ fgets(InputKeywords, BUFF_SIZE - 1, stdin); + + if (strlen(InputKeywords) < 1) + strcpy(InputKeywords,"KEYWORDS GO HERE"); +@@ -108,11 +108,11 @@ + } + } + printf("Output file name : "); +- gets(OutfileName); ++ fgets(OutfileName, BUFF_SIZE - 1, stdin); + if (has_keywords) + { + printf("Keywords : "); +- gets(OutputKeywords); ++ fgets(OutputKeywords, BUFF_SIZE - 1, stdin); + if (strlen(OutputKeywords) < 1) + strcpy(OutputKeywords,"KEYWORDS GO HERE"); + } +@@ -167,7 +167,7 @@ + while (done == FALSE) + { + printf("Choice : "); +- gets(choice_string); ++ fgets(choice_string, 99, stdin); + for (i = 0; i < (int) strlen(choice_string); i++) + { + if (!isdigit(choice_string[i])) diff --git a/biology/babel/pkg-comment b/biology/babel/pkg-comment new file mode 100644 index 000000000000..a7633be03ae8 --- /dev/null +++ b/biology/babel/pkg-comment @@ -0,0 +1 @@ +Conversion program among various molecular file formats. diff --git a/biology/babel/pkg-descr b/biology/babel/pkg-descr new file mode 100644 index 000000000000..7823c5be345e --- /dev/null +++ b/biology/babel/pkg-descr @@ -0,0 +1,6 @@ +Babel is a conversion program which is able to convert among dozens of +molecular file formats. +Babel is developed by Dolata Group, Department of Chemistry, +Arizona University and Ohio State University. +The homepage of babel could be found at + http://mercury.aichem.arizona.edu/babel.html diff --git a/biology/babel/pkg-plist b/biology/babel/pkg-plist new file mode 100644 index 000000000000..9acff72a342f --- /dev/null +++ b/biology/babel/pkg-plist @@ -0,0 +1,7 @@ +bin/babel +share/babel/README.1ST +share/babel/element.lis +share/babel/new.lis +share/babel/quanta.lis +share/babel/types.lis +@dirrm share/babel -- cgit v1.2.3