summaryrefslogtreecommitdiff
path: root/science/vmd (follow)
Commit message (Collapse)AuthorAgeFilesLines
* *: Bump PORTREVISIONs for math/mpc update to 1.3.1Gerald Pfeifer2023-04-231-0/+1
|
* science/vmd: Add another alternate MASTER_SITE for tachyonJason W. Bacon2023-01-061-0/+1
| | | | jedi.ks.uiuc.edu is timing out
* science/vmd: Update to 1.9.4a57Jason W. Bacon2022-11-159-387/+952
| | | | | Unbreak build: 1.9.3 incompatible with latest python tools Clean up portlint and stage qa issues
* Remove WWW entries moved into port MakefilesStefan Eßer2022-09-071-2/+0
| | | | | | | | | | Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)
* Add WWW entries to port MakefilesStefan Eßer2022-09-071-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
* science: remove 'Created by' linesTobias C. Berner2022-07-201-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | A big Thank You to the original contributors of these ports: * Andreas Fehlner <fehlner@gmx.de> * Brad Huntting <huntting@glarp.com> * Chao Shin <quakelee@cn.FreeBSD.org> * Cheng-Lung Sung <clsung@FreeBSD.org> * Chia-Hsing Yu <me@davidyu.org> * Chris Rees <utisoft@gmail.com> * David Naylor <dbn@FreeBSD.org> * Dmitry Sivachenko <demon@FreeBSD.org> * Ed Schouten <ed@FreeBSD.org> * Eric Freeman <freebsdports@chillibear.com> * Erik B Knudsen * Fernan Aguero <fernan@iib.unsam.edu.ar> * Frederic Culot <frederic@culot.org> * Gea-Suan Lin <gslin@gslin.org> * Glenn Johnson * Greg Lewis <glewis@FreeBSD.org> * Igor Serikov <iserikov@acm.org> * Johannes Dieterich <dieterich@ogolem.org> * Johannes Dieterich <jmd@FreeBSD.org> * Johannes M Dieterich <jmd@FreeBSD.org> * Johannes Meixner <johannes@perceivon.net> * Ju Pengfei <jupengfei@gmail.com> * Kay Lehmann <kay_lehmann@web.de> * Klaus Aehlig <aehlig@linta.de> * Kurt Kanzenbach <kurt@kmk-computers.de> * Leland Wang <llwang@infor.org> * Li-Lun Wang <llwang@infor.org> * Markus Brueffer <markus@FreeBSD.org> * NAKATA Maho <maho@FreeBSD.org> * NAKATA, Maho <maho@FreeBSD.org> * Nakata Maho <chat95@mbox.kyoto-inet.or.jp> * Nakata Maho <maho@FreeBSD.org> * Pav Lucistnik <pav@FreeBSD.org> * Pav Lucistnik <pav@oook.cz> * Pedro F. Giffuni * Pedro F. Giffuni <giffunip@tutopia.com> * Pedro Giffuni * Pedro Giffuni <giffunip@asme.org> * Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Rong-En Fan <rafan@FreeBSD.org> * Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> * Seamus Venasse <svenasse@polaris.ca> * Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> * Shin-ya MURAKAMI <murashin@gfd-dennou.org> * Shin-ya Murakami <murashin@gfd-dennou.org> * Stas Timokhin <devel@stasyan.com> * Stephen Montgomery-Smith <stephen@math.missouri.edu> * Steve Wills <steve@mouf.net * Steve Wills <steve@mouf.net> * Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> * TAKATSU Tomonari <tota@FreeBSD.org> * TAOKA Fumiyoshi * Thierry Thomas <thierry@pompo.net> * Tim Cas <ports@stdrand.com> * Uffe Jakobsen <uffe@uffe.org> * Veniamin Gvozdikov <vg@FreeBSD.org> * Vsevolod Stakhov <vsevolod@highsecure.ru> * Wen Heping <wen@FreeBSD.org> * Wen Heping <wenheping@gmail.com> * Wen heping <wenheping@gmail.com> * Ying-Chieh Liao <ijliao@FreeBSD.org> * Yuri Victorovich <yuri@rawbw.com> * anholt@FreeBSD.org * bacon@smithers.neuro.mcw.edu * batman <batman@udel.edu> * db * gurkan@phys.ethz.ch * ijliao * jbacon * maintainer.freebsd@xpoundit.com * mi * rafan@infor.org * shurd@FreeBSD.org * thierry@pompo.net * will With hat: portmgr
* science/netcdf: Update to 4.8.1Po-Chuan Hsieh2022-03-081-1/+1
| | | | | | | - Update MASTER_SITES - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/Unidata/netcdf-c/releases
* graphics/mesa-libs: Bump reverse deps for libglvndKevin Bowling2021-06-221-1/+1
| | | | | | | | | | Per discussion with bapt on helping pkg handle the changing of these deps and avoiding impossible upgrade senarios. PR: 246767 Reviewed by: manu, bapt Approved by: x11 Differential Revision: https://reviews.freebsd.org/D30824
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
|
* Bump PORTREVISION for science/netcdf shlib changeSunpoet Po-Chuan Hsieh2021-01-261-1/+1
| | | | Notes: svn path=/head/; revision=562679
* Return dbn's ports to the pool after safekeeping his commit bit.Rene Ladan2020-02-031-1/+1
| | | | Notes: svn path=/head/; revision=525092
* Add USES=xorg USES=gl, ports categories sNiclas Zeising2019-11-071-1/+1
| | | | | | | | Add USES=xorg and USES=gl to ports in categories starting with 's' While here, try to sprinkle other USES (mostly gnome and sdl) as needed. Notes: svn path=/head/; revision=516988
* science/vmd: Add USES=glYuri Victorovich2019-08-151-5/+3
| | | | | | | | | | Pet portlint, group USExx lines. PR: 237066 Approved by: dbn (maintainer's timeout 4+ months) Notes: svn path=/head/; revision=509002
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-261-1/+1
| | | | | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
* Update science/netcdf to 4.6.3Sunpoet Po-Chuan Hsieh2019-03-021-1/+1
| | | | | | | | | | - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/Unidata/netcdf-c/releases https://github.com/Unidata/netcdf-c/blob/master/RELEASE_NOTES.md Notes: svn path=/head/; revision=494422
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-121-1/+1
| | | | | | | | | | | | | | | | | | defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590 Notes: svn path=/head/; revision=487272
* science/vmd: Remove RESTRICTED: not requiredYuri Victorovich2018-09-101-2/+0
| | | | | | | | Reported by: mat Approved by: portmgr Notes: svn path=/head/; revision=479368
* science/vmd: License auto-accept -> no-auto-acceptYuri Victorovich2018-09-091-1/+1
| | | | | | | VMD license requires specific acknowledgement if VMD is used for published results, therefore no auto-accept. Notes: svn path=/head/; revision=479336
* science/vmd: Add RESTRICTED clause.Yuri Victorovich2018-09-091-1/+3
| | | | | | | | | | | | This software comes from the University of Illinois, same as science/namd, and is for non-commercial use only. Also add it to ports/LEGAL. Approved by: portmgr blanket Notes: svn path=/head/; revision=479327
* Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer2018-03-101-1/+1
| | | | | | | version 1.1.0 (via revision 464079). Notes: svn path=/head/; revision=464084
* Update to 4.5.0Sunpoet Po-Chuan Hsieh2017-10-211-1/+1
| | | | | | | | | - Pet portlint: reorder LICENSE knobs Changes: https://github.com/Unidata/netcdf-c/releases Notes: svn path=/head/; revision=452602
* science/vmd: various fixesDavid Naylor2017-06-184-45/+70
| | | | | | | | | | | | | | | | | | | | | | | | - fix spelling of VMD license [1] - use USES=tcl,tk instead of direct dependency - patch vmd to support (tcl|tk)86 - fix shebang for tcl [1] - fix detection of netcdf - add sqlite as a dependency (for dmsplugin) [1] - add expact as a dependency (for hoomdplugin) - rework configuration: - explicitly list required components (CONFIGURE_ARGS) - call configure directly (instead of via gmake(1)) - patch configure to accept TCLLDFLAGS and TKLDFLAGS - pass PREFIX as an environment variable instead of using sed(1) - patch Make-arch to accept environment TCLLDFLAGS and NETCDFLDFLAGS - add support for parallel building (except for building plugins) - bump PORTREVISION PR: 219642 Reported by: Yuri Victorovich <yuri@rawbw.com> Notes: svn path=/head/; revision=443820
* Revision bump of all ports with USE_GL after consolidation of mesa-libsMatthew Rezny2017-05-231-1/+1
| | | | | | | | Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D10845 Notes: svn path=/head/; revision=441503
* science/vmd: unbreak buildDavid Naylor2017-04-046-43/+50
| | | | | | | | - Remove patches that are not required with the new sources for stride - Add stride license test Notes: svn path=/head/; revision=437680
* science/vmd: correct the wording of numpy keywordRuslan Makhmatkhanov2017-01-091-2/+2
| | | | Notes: svn path=/head/; revision=430912
* science/vmd: fix port to depend on numpy.David Naylor2017-01-091-2/+3
| | | | | | | Reported by: Ruslan Makhmatkhanov <cvs-src@yandex.ru> Notes: svn path=/head/; revision=430911
* science/vmd: update to 1.9.3David Naylor2017-01-085-428/+520
| | | | | | | | | | | | | | | | | | | | | | | - update MASTER_SITES to use upstream stride (the old - repackages - sources were no longer working). - take maintainership: although I don't use the software I am happy to respond to PR's and check for updates periodically, - add license information for each source: - vmd: custom license that requires the user to explicitly download (and accept the license before downloading). Mark the license as auto-accept here as the present of the DISTFILE will indicate that the license has been accepted - tachyon: standard 3-clause BSD license :-) - stride: almost BSD license, except only for academic use (i.e. non-commersial) and a requirement to report bugs to the author. Add a plain text copy of the license file to the port. - add missing dependencies: gl, x11 - fix detection of python. - simplify configure patch. - update pkg-plist for changes in plugin versions. Notes: svn path=/head/; revision=430880
* Bump PORTREVISIONS for ports depending on the canonical version of GCC andGerald Pfeifer2016-11-201-1/+1
| | | | | | | | | | | | lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms). In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang, c++11-lang, c++0x, c11 requested via USES=compiler. Notes: svn path=/head/; revision=426566
* Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.Mathieu Arnold2016-04-011-5/+5
| | | | | | | | With hat: portmgr Sponsored by: Absolight Notes: svn path=/head/; revision=412349
* 3 ports categories: Remove $PTHREAD_LIBSJohn Marino2015-03-241-10/+13
| | | | | | | | | Categories: print, science, emulators approved by: PTHREAD blanket Notes: svn path=/head/; revision=382185
* science/vmd: Improve cc/gcc replacement patterns for MakefilesJohn Marino2015-03-151-8/+3
| | | | | | | | PR: 197103 Submitted by: Sakaue Mamoru Notes: svn path=/head/; revision=381327
* science/vmd: Unbreak on F10+John Marino2015-02-241-0/+25
| | | | | | | | | | | | This patch removes the hardcoded "gcc" so that it works with USE_GCC variable. There is a slightly newer version of vmd available, so a version upgrade may soon follow. PR: 197103 Submitted by: Sakaue Mamoru Notes: svn path=/head/; revision=379777
* Cleanup plistAntoine Brodin2014-11-121-159/+1
| | | | Notes: svn path=/head/; revision=372500
* Update the default version of GCC in the Ports Collection from GCC 4.7.4Gerald Pfeifer2014-09-101-1/+1
| | | | | | | | | | | | | to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit) Notes: svn path=/head/; revision=367888
* Stage science/vmdJohn Marino2014-08-302-45/+139
| | | | | | | | | | | | | | | | I clobbered the Makefile diff (sorry danfe@). The entire makefile was tabbed over 3 times. There was also no respect for 80 columns so a good part of the clobber came from line wrapping. I also made $TAR use real switches (e.g. -xzf) rather than undocumented by supported (zxf) This is another manual package / obtain restricted data files/ only port so I can't test much of it. PR: 193090 Submitted by: turutani (Kyoto) Notes: svn path=/head/; revision=366620
* Reset maintainership for ports not staged with no pending PRBaptiste Daroussin2014-07-241-1/+1
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=362828
* Remove indefinite articles and trailing periods from COMMENT, plusJimmy Olgeni2014-07-171-1/+1
| | | | | | | | | | | | minor COMMENT typos and surrounding whitespace fixes. A few Makefiles where not included as they contain Latin-1 characters that break the Phabricator workflow. Categories P-S. CR: D422 Approved by: portmgr (bapt) Notes: svn path=/head/; revision=362126
* Convert GMAKE to MAKE_CMDBaptiste Daroussin2014-06-251-7/+7
| | | | | | | | | | Please note that lots of invocation of MAKE_CMD here are wrong as they do not properly respect MAKE_ENV and friends With hat: portmgr Notes: svn path=/head/; revision=359185
* Remove all space characters from Makefile assignments.Jimmy Olgeni2014-06-081-1/+1
| | | | | | | | | | No functional changes included. CR: D193 (except math/sedumi) Approved by: portmgr (bapt) Notes: svn path=/head/; revision=357070
* - Update to 4.3.2 (from science/netcdf4)Sunpoet Po-Chuan Hsieh2014-05-031-4/+5
| | | | | | | | | | | - Bump PORTREVISION for science/netcdf shlib change and dependency change from science/netcdf4 to science/netcdf [1] Changes: http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html Approved by: portmgr (bapt) [1] Notes: svn path=/head/; revision=352855
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | science) Notes: svn path=/head/; revision=327767
* - convert to the new perl5 frameworkAndrej Zverev2013-09-161-2/+2
| | | | | | | | | - convert USE_GMAKE to Uses Approved by: portmgr (bapt@, blanket) Notes: svn path=/head/; revision=327380
* - Remove bogus conditional IGNORE for PACKAGE_BUILDING; these shouldBryan Drewery2013-08-291-1/+1
| | | | | | | | | | | | | be IGNOREd regardless of PACKAGE_BUILDING. Soem have no MASTER_SITES and require manual fetching, others are already marked RESTRICTED. - Trim headers - Convert some pre-fetch errors into IGNORE - Remove needless quoting in java/jdk7-doc IGNORE With hat: portmgr Notes: svn path=/head/; revision=325598
* Fix minor nit: use the canconical FreeBSD.org form for email addresses.Eitan Adler2013-03-171-6/+2
| | | | | | | | | | | | This was causing me issues when attempting to gather certain statistics. While here trim header Approved by: miwi, adrian, tj No objection from: db, bjk, cperciva, scheidell, osa Notes: svn path=/head/; revision=314460
* In categories starting with [n-s], remove empty lines (and also few cases ofAlexey Dokuchaev2013-03-171-1/+0
| | | | | | | trailing slashes) from pkg-plist. Notes: svn path=/head/; revision=314445
* Update to 1.9.1.Hiroki Sato2012-04-2312-552/+533
| | | | | | | Submitted by: bjk Notes: svn path=/head/; revision=295293
* re-assignment of echo_msg breaks 'make readme'Jason Helfman2011-12-201-8/+1
| | | | | | | | | | | unbreak PR: ports/163257 Submitted by: Jason Helfman <jhelfman@experts-exchange.com> Approved by: maintainer, crees (mentor) Notes: svn path=/head/; revision=287751
* - Add files/patch-bin_vmd.csh, files/patch-bin_vmd.shNicola Vitale2010-12-184-4/+32
| | | | | | | | | | | | | to fix a runtime error (the "ARCH" value is not set) - Bump PORTREVISION - Remove MD5 checksum from distinfo - Set ONLY_FOR_ARCHS (i386 and amd64) PR: ports/152955 Submitted by: Benjamin Kaduk <kaduk-fbsd at mit.edu> (maintainer) Notes: svn path=/head/; revision=266546
* - update to 1.4.1Dirk Meyer2010-03-281-1/+1
| | | | | | | | Reviewed by: exp8 run on pointyhat Supported by: miwi Notes: svn path=/head/; revision=251605
* - Chase x11-toolkits/fltk updatePietro Cerutti2010-03-231-1/+2
| | | | Notes: svn path=/head/; revision=251412