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* Add buddy 2.4, a Binary Decision Diagram library.Thierry Thomas2005-01-221-0/+1
| | | | | | | | PR: 71221 Submitted by: Leland Wang Notes: svn path=/head/; revision=127101
* DeViSoR is abbreviated for "Design and Visualization of Software Resource". TheHerve Quiroz2005-01-211-0/+1
| | | | | | | | | | | | | | | | | | | | | | DeViSoRGrid application is part of that software family and is primarily used for the following tasks, so far in 2D only: * Geometry generation * Manual coarse mesh generation * Grid visualisation at all levels All of this can be done in a very confortable manner using a simple point and click interface like in common vector-based image processing software. Both the reliable FEAT file format and the new FEAST format with integrated parallelism are supported. WWW: http://www.featflow.de/ PR: 75973 Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=127045
* Add a port of udunits:Greg Lewis2005-01-141-0/+1
| | | | | | | | | | | | | | The Unidata units library, udunits, supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of unit specifications, and conversion of values between compatible scales of measurement. WWW: http://www.unidata.ucar.edu/packages/udunits/ Obtained from: Gentoo (partially) Notes: svn path=/head/; revision=126463
* Add isaac-cfd 4.2, Integrated Solution Algorithm for ArbitraryThierry Thomas2004-12-291-0/+1
| | | | | | | | | | Configuration. PR: 75529 Submitted by: Pedro F. Giffuni Notes: svn path=/head/; revision=125463
* Add gsystem, a virtual reality simulation framework, specialised on life andPav Lucistnik2004-12-281-0/+1
| | | | | | | | | | | | evolution simulation. I'm a main developer of this framework and I will also keep the FreeBSD port up-to-date, as I'm using FreeBSD as my primary platform. See http://www.g-system.at for details. PR: ports/75466 Submitted by: Raphael Langerhorst <raphael-langerhorst@gmx.at> Notes: svn path=/head/; revision=125394
* Add x11iraf 1.3.1, which provides graphical tools to work with IRAF.Thierry Thomas2004-12-261-0/+1
| | | | | | | | PR: 70816 Submitted by: David Syphers. Notes: svn path=/head/; revision=125246
* Slave port to science/libsvmSergey Matveychuk2004-12-111-0/+1
| | | | | | | | PR: ports/73981 Submitted by: Rong-En Fan <rafan(at)infor.org> Notes: svn path=/head/; revision=123685
* SIMLIB/C++ is the SIMulation LIBrary for C++ programming language. You canPav Lucistnik2004-11-271-0/+1
| | | | | | | | | | | | create models directly in C++ language with the use of predefined simulation tools from the library. SIMLIB allows object-oriented description of models based on simulation abstractions. Current version allows a description of continuous, discrete, combined, 2D/3D vector, and fuzzy models. Requested by: Roman Divacky Notes: svn path=/head/; revision=122623
* Add omnetpp, a public-source, component-based, modular and open-architecturePav Lucistnik2004-11-151-0/+1
| | | | | | | | | | | | | | simulation environment with strong GUI support and an embeddable simulation kernel. Its primary application area is the simulation of communication networks and because of its generic and flexible architecture, it has been successfully used in other areas like the simulation of IT systems, queueing networks, hardware architectures and business processes as well. PR: ports/73920 Submitted by: Bjoern Koenig <bkoenig@cs.tu-berlin.de> Notes: svn path=/head/; revision=121716
* Add getdp 1.0.0, a rather general finite element solver using mixedThierry Thomas2004-11-151-0/+1
| | | | | | | | | finite elements. Suggested by: Pedro F. Giffuni. Notes: svn path=/head/; revision=121709
* New port science/gromacsMaho Nakata2004-10-191-0/+1
| | | | | | | | | | | | | | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles, and also the World's fastest Molecular Dynamics under GPL. PR: 71211 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> Reviewed by: Bruno Afonso <brunomiguel@dequim.ist.utl.pt> Notes: svn path=/head/; revision=119761
* add py-scipy 0.3Ying-Chieh Liao2004-08-261-0/+1
| | | | | | | Scientific tools for Python Notes: svn path=/head/; revision=117296
* Add vmd, a molecular visualization program for displaying, animating, andPav Lucistnik2004-08-211-0/+1
| | | | | | | | | | analyzing large biomolecular systems using 3-D graphics and built-in scripting. PR: ports/70509 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> Notes: svn path=/head/; revision=116960
* Add abinit, calculates total energy, charge densityMaho Nakata2004-08-141-0/+1
| | | | | | | and electronic structure of systems. Notes: svn path=/head/; revision=116182
* Add kst 0.97.Markus Brueffer2004-04-301-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | kst is a program for looking at data streams. It can plot: - x-y plots - power spectra - histograms - equations (including equations of data streams). - data in files which are being updated as data is being logged, in which case it can act as a plotter for a chart recorder. - much more You can use the mouse to rapidly zoom into interesting parts of the plots. In addition to a complete GUI, kst has a convenient command line interface for rapid access to plotting data in files. kst can read data from stdin. It provides a DCOP interface for remote manipulation, and supports several file formats in use in scientific projects around the world. WWW: http://omega.astro.utoronto.ca/kst/ WWW: http://extragear.kde.org/apps/kst.php Notes: svn path=/head/; revision=108034
* Remove category pkg/COMMENT files in favour of a COMMENT variable in theKris Kennaway2004-04-021-0/+2
| | | | | | | | | | category makefile. Submitted by: Matthew Seaman <m.seaman@infracaninophile.co.uk> PR: 59651 Notes: svn path=/head/; revision=105948
* Add ovt 2.3, the Orbit Visualization Tool.Thierry Thomas2004-03-231-0/+1
| | | | | | | | PR: 57860 Submitted by: Mykola Khotyaintsev <ko@nest.irfu.se> Notes: svn path=/head/; revision=105088
* A Density functional software. This software has a unique designMaho Nakata2004-03-201-0/+1
| | | | | | | | | | | | | | | | based upon the DFT++ algebraic framework introduced in Computer Physics Communications 128, 1-45 (June 2000). This framework allows us to transparently separate the computational guts (cache optimization, parallelization, etc.) from the introduction of new representations (plane waves, wavelets) and new physics (new density functionals, linear response theory, dielectric solutions). The software is fully cache and register optimized, and runs in serial, threaded, MPI and mixed threaded-MPI parallel environments. Notes: svn path=/head/; revision=104696
* The PSI3 suite of quantum chemical programs is designed for efficient,Maho Nakata2004-03-191-0/+1
| | | | | | | | | | | high-accuracy calculations of properties of small to medium-sized molecules. The package's current capabilities include a variety of Hartree-Fock, coupled cluster, complete-active-space self-consistent-field, and multi-reference configuration interaction models. Molecular point-group symmetry is utilized throughout to maximize efficiency. Notes: svn path=/head/; revision=104605
* Add gave, a gtk+ based grid data analyser and viewer written in Ruby.Pav Lucistnik2004-03-141-0/+1
| | | | | | | | PR: ports/64249 Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> Notes: svn path=/head/; revision=104002
* Add ruby-gphys, a multi-purpose class to handle gridded physicalPav Lucistnik2004-03-141-0/+1
| | | | | | | | | | quantities for Ruby. PR: ports/64248 Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> Notes: svn path=/head/; revision=103999
* Add ruby-dcl, a ruby interface to DCL, a scienific graphical library.Pav Lucistnik2004-02-271-0/+2
| | | | | | | | | | Add ruby-dcl-gtk, a slave port for ruby-dcl with gtk patches. PR: ports/62873, ports/62874 Submitted by: <murashin@edamame.summing.com> Notes: svn path=/head/; revision=102331
* Add cdcl-gtk, a slave port for science/cdcl with enabled Gtk support.Pav Lucistnik2004-02-271-0/+1
| | | | | | | | PR: ports/62872 Submitted by: Shin'ya Murakami <murashin@edamame.summing.com> Notes: svn path=/head/; revision=102323
* Add cdcl, a scientific graphic library for geosciencePav Lucistnik2004-02-271-0/+1
| | | | | | | | PR: ports/62871 Submitted by: Shin'ya Murakami <murashin@edamame.summing.com> Notes: svn path=/head/; revision=102319
* Unhook hdf* ports in graphics, hook them in science.Pav Lucistnik2004-02-251-0/+2
| | | | Notes: svn path=/head/; revision=102144
* Gramps (Genealogical Research and Analysis Management Programming System)Pav Lucistnik2004-02-011-0/+1
| | | | | | | | | | | | | is an open source genealogy program. It is written in Python, using the GTK/GNOME interface. WWW: http://gramps.sourceforge.net PR: ports/62171 Submitted by: Andreas Fehlner <fehlner@gmx.de> Notes: svn path=/head/; revision=99667
* . Welcome felt to the science category.Greg Lewis2003-11-081-0/+1
| | | | | | | | PR: 58178 Submitted by: Pedro F. Giffuni <giffunip@yahoo.com> Notes: svn path=/head/; revision=93381
* add kmovisto 0.5.1Ying-Chieh Liao2003-10-241-0/+1
| | | | | | | A real 3-D molecule viewer Notes: svn path=/head/; revision=92020
* Remove #Maho Nakata2003-10-041-1/+1
| | | | | | | chemtool-devel is now real developer version of chemtool. Notes: svn path=/head/; revision=90198
* New port: science/at Acoustic ToolBoxEdwin Groothuis2003-09-081-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | The Acoustic ToolBox includes four acoustic models: BELLHOP: A beam/ray trace code KRAKEN: A normal mode code SCOOTER: A finite element FFP code SPARC: A time domain FFP code A common input structure has been used throughout so that only minor modifications are needed to switch from one program to another. All the models produce shade files which can be processed using a common set of plotting routines to plot transmission loss vs. range or vs. range and depth. These plotting routines are contained in the GLOBAL directory. PR: ports/42378 Submitted by: Heiner Strauss <heiner@bilch.com> Notes: svn path=/head/; revision=88803
* Added a Numerical Hartree-Fock Program for Diatomic Molecules.Maho Nakata2003-07-241-0/+1
| | | | | | | | | This program package calcluates virtually exact solution of the Hartree-Fock and Hartree-Fock-Salter equations for diatomic molecules (distributed under GPL). Notes: svn path=/head/; revision=85513
* Comment out chemtool-devel, which provides a duplicate chemtool-1.6 versionKris Kennaway2003-07-221-1/+1
| | | | | | | | | since the upgrade of chemtool. Pointy hat to: maho Notes: svn path=/head/; revision=85397
* Added new port chemtool-devel.Maho Nakata2003-05-101-0/+1
| | | | | | | | | | | Chemtool is a nice drawing tool for chemist, however, it has not been released almost 1 year. So I added developer version as -devel. Have fun! Notes: svn path=/head/; revision=80580
* Add new port science/ghemicalMaho Nakata2003-05-041-0/+1
| | | | | | | a computational chemistry software package Notes: svn path=/head/; revision=80095
* Add gchempaint, a 2D chemical structure editor for GNOME 2.Joe Marcus Clarke2003-04-081-0/+1
| | | | | | | | PR: 50539 Submitted by: Pav Lucistnik <pav@oook.cz> Notes: svn path=/head/; revision=78562
* Add gchemutils a set of C++ class and GTK+-2 widgets related to chemistry.Joe Marcus Clarke2003-04-081-0/+1
| | | | | | | | PR: 50538 Submitted by: Pav Lucistnik <pav@oook.cz> Notes: svn path=/head/; revision=78560
* add mpb 1.4.2Ying-Chieh Liao2003-04-041-0/+1
| | | | | | | MIT Photonic-Bands Notes: svn path=/head/; revision=78158
* add libctl 2.2Ying-Chieh Liao2003-04-041-0/+1
| | | | | | | Control Language Library Notes: svn path=/head/; revision=78126
* add openbabel 1.100.0Ying-Chieh Liao2003-01-051-0/+1
| | | | | | | Chemistry file translation program Notes: svn path=/head/; revision=72577
* add xloops-ginac 0.1.3Ying-Chieh Liao2002-10-151-0/+1
| | | | | | | A program calculating Feynman diagrams Notes: svn path=/head/; revision=68091
* add flounder 0.32aYing-Chieh Liao2002-10-141-0/+1
| | | | | | | A quick way to visualize regularly spaced 4D data Notes: svn path=/head/; revision=68054
* add mmtk 2.2Ying-Chieh Liao2002-09-161-0/+1
| | | | | | | | | | An Open Source program library for molecular simulation applications PR: 42332 Submitted by: Glenn Johnson <glennpj@charter.net> Notes: svn path=/head/; revision=66428
* add glens 0.3Ying-Chieh Liao2002-08-081-0/+1
| | | | | | | OpenGL gravitational lens simulator Notes: svn path=/head/; revision=64210
* add bblimage 0.66Ying-Chieh Liao2002-07-221-0/+1
| | | | | | | A set of software tools for medical image processing Notes: svn path=/head/; revision=63376
* add mpqc-mpichYing-Chieh Liao2002-07-161-0/+1
| | | | | | | | PR: 40631 Submitted by: Nakata Maho <chat95@mbox.kyoto-inet.or.jp> Notes: svn path=/head/; revision=63072
* add oases 2.2Ying-Chieh Liao2002-05-281-0/+1
| | | | | | | | | | Ocean Acoustics and Seismic Exploration Synthesis PR: 38548 Submitted by: Heiner Strau? <heiner@bilch.com> Notes: svn path=/head/; revision=60166
* add euler 1.60.4Ying-Chieh Liao2002-05-141-0/+1
| | | | | | | A program computes with real and complex numbers and matrices Notes: svn path=/head/; revision=59056
* add mayavi 1.1Ying-Chieh Liao2002-03-091-0/+1
| | | | | | | The MayaVi Data Visualizer Notes: svn path=/head/; revision=55764
* add gdis 0.73.3Ying-Chieh Liao2002-03-051-0/+1
| | | | | | | Display and manipulation of isolated molecules and periodic systems Notes: svn path=/head/; revision=55550
* Add p5-Chemistry-Elements 0.91, perl extension for working withPete Fritchman2002-02-081-0/+1
| | | | | | | | | | Chemical Elements. PR: 33412 Submitted by: Seamus Venasse <svenasse@polaris.ca> Notes: svn path=/head/; revision=54347
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