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* Update distfiles' checksums after the distfiles have been rerolled yetPeter Pentchev2000-12-042-4/+5
| | | | | | | | | | again without changing names or versions. Also add a new MASTER_SITE. PR: 23262 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=35651
* Distfile tarballs were rerolled without notice due to a minor bug.Peter Pentchev2000-11-301-4/+4
| | | | | | | | PR: 23193 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=35565
* - Update port biology/emboss from 1.7.0 to 1.8.0James E. Housley2000-11-284-17/+124
| | | | | | | | PR: 23130 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=35477
* Make nolonger support :U. Fix to compensate for that.James E. Housley2000-11-191-3/+6
| | | | | | | | Submitted by: fenner Approved by: MAINTAINER Notes: svn path=/head/; revision=35251
* They made changes to the "blast" program.James E. Housley2000-11-152-2/+3
| | | | | | | Submitted by: MAINTAINER Notes: svn path=/head/; revision=35154
* - This is a fairly extensive rework of this port.James E. Housley2000-11-133-0/+56
| | | | | | | | | | | | | | - "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=35081
* - This is a fairly extensive rework of this port.James E. Housley2000-11-134-5/+150
| | | | | | | | | | | | | | | - "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to choose which of these should be isntalled. PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=35080
* Change motif to a normal dependency. REQUIRES_MOTIF is now calledSatoshi Asami2000-11-071-1/+1
| | | | | | | | | | | | | | | | | USE_MOTIF and generates a LIB_DEPENDS to x11-toolkits/open-motif. As before, it implies USE_XPM (and therefore USE_XLIB). Motif-dummy is removed from PKG_IGNORE_DEPENDS, whose sole resident is now XFree86-3. Most of the simple ".if defined(HAVE_MOTIF)"s are removed to always have USE_MOTIF. ftp/moxftp will define USE_MOTIF unless WANT_ATHENA_VERSION (new variable) is defined. I merged the X cases in cad/mars, so USE_MOTIF is used iff WITHOUT_X11 is not defined. I will remove x11-toolkits/Motif-dummy (which has been repo copied to open-motif) in a few days. Notes: svn path=/head/; revision=34892
* Yes. They did re-roll this version, it is legit.James E. Housley2000-11-032-2/+2
| | | | | | | | | | | They donot version the dist, but store them in versioned dir. Update Makefile to handle that. Update CHECKSUM Submitted by: bento Notes: svn path=/head/; revision=34732
* Updated to new version. That is the pits, the day after it becomesJames E. Housley2000-11-024-4/+3
| | | | | | | | | | a port they release a new version. This is a new version, w/o a number. PR: 22522 Submitted by: Tony Maher <tonym@dt.home> MAINTAINER Notes: svn path=/head/; revision=34626
* Make portlint happy, remove a spaceJames E. Housley2000-11-011-1/+1
| | | | Notes: svn path=/head/; revision=34535
* Update to version 1.7.0James E. Housley2000-11-013-2/+11
| | | | | | | | PR: 22474 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=34533
* File missing in pkg-plistJames E. Housley2000-10-301-0/+1
| | | | | | | Submitted by: bento Notes: svn path=/head/; revision=34458
* New Port: biology/ncbi-toolkitJames E. Housley2000-10-2911-0/+376
| | | | | | | | | | National Center for Biotechnology Information (NCBI) Development Toolkit. PR: 22388 Submitted by: Tony Maher <tony.maher@ebioinformatics.com> Notes: svn path=/head/; revision=34402
* Update biology/sim4 to 2000.10.19James E. Housley2000-10-263-5/+7
| | | | | | | | | | Maintainership over to FreeBSD bio-porters mailing list PR: 22306 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=34252
* gmake is neededJames E. Housley2000-10-241-0/+1
| | | | | | | Submitted by: bento Notes: svn path=/head/; revision=34172
* Update to version 0.6.2James E. Housley2000-10-133-174/+132
| | | | | | | | PR: 21954 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=33772
* A file was added to distfile and then repackaged with the same name.James E. Housley2000-10-133-2/+5
| | | | | | | | | | No response from MAINTAINER PR: 21345 Submitted by: Johann Visagie <wjv@cityip.co.za> (actual patch) Notes: svn path=/head/; revision=33769
* Initial import of fastDNAml Version 1.2.2James E. Housley2000-10-126-0/+93
| | | | | | | | | | The faster variant of DNAML, makes phylogenetic trees using maximum likelihood PR: 21931 Submitted by: Motomichi Matsuzaki <mzaki@e-mail.ne.jp> Notes: svn path=/head/; revision=33727
* Missing " in post-patch targetJames E. Housley2000-10-111-1/+1
| | | | | | | Submitted by: bento Notes: svn path=/head/; revision=33706
* PR 21608 was not processed as intented.James E. Housley2000-10-102-21/+22
| | | | | | | | | | Bumped PORTREVISION and removed duplicate from pkg-plist. PR: 21894 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp> Notes: svn path=/head/; revision=33686
* Initial import of biology/biojavaJames E. Housley2000-10-106-0/+661
| | | | | | | | PR: 21678 Submitted by: Brad Chapman <chapmanb@arches.uga.edu> Notes: svn path=/head/; revision=33667
* - Update to 1.6.0Kevin Lo2000-10-103-363/+372
| | | | | | | | | | - Reorder packing list PR: 21857 Submitted by: MAINTAINER Notes: svn path=/head/; revision=33651
* - Update biology/p5-AcePerl from 1.62 to 1.67Kevin Lo2000-10-106-61/+88
| | | | | | | | | | | | | | - Alphabetise ${PLIST} to ease future maintenance - Port now compiles in XS optimisations and RPC server interface - Port now honours ${CC} properly, also for compiled extensions - Port now uses PERL_CONFIGURE - Hand over port MAINTAINERship to FreeBSD bio-porters mailing list PR: 21865 Submitted by: MAINTAINER Notes: svn path=/head/; revision=33644
* Initiail version of nab (4.2)James E. Housley2000-10-1017-0/+666
| | | | | | | | PR: 21585 Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU> Notes: svn path=/head/; revision=33641
* This is nab (nucleic acid builder), a language for macromoleculesJames E. Housley2000-10-101-0/+1
| | | | | | | | PR: 21585 Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU> Notes: svn path=/head/; revision=33640
* - Fix MASTER_SITES/DISTNAMEJames E. Housley2000-10-103-20/+19
| | | | | | | | | | | | | | | - USEPGPLOT -> WITH_PGPLOT - Support FFLAGS/X11BASE properly Remove file: files/patch-ab PR: 21608 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp> Approved by: rmiya@cc.hirosaki-u.ac.jp (Ryo MIYAMOTO) MAINTAINER Notes: svn path=/head/; revision=33638
* The last commit changes the ports and therefore need a PORTREVISION bumpJames E. Housley2000-10-102-0/+2
| | | | Notes: svn path=/head/; revision=33637
* Support PREFIX properlyJames E. Housley2000-10-102-1/+5
| | | | | | | | | PR: 21607 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp> Approved by: rmiya@cc.hirosaki-u.ac.jp (Ryo MIYAMOTO) MAINTAINER Notes: svn path=/head/; revision=33636
* - Fix MASTER_SITESJames E. Housley2000-10-104-18/+36
| | | | | | | | | | | | | | | | - Support CC/LOCALBASE/X11BASE/PREFIX properly Remove file: patches/patch-aa Approval from MAINTAINER after sending EMail PR: 21609 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp> Approved by: Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw> MAINTAINER Notes: svn path=/head/; revision=33635
* Add do-install target to port's Makefile. Remove patch sectionTrevor Johnson2000-10-082-10/+5
| | | | | | | | | | adding install target to ${WRKSRC}/Makefile. PR: 21792 Submitted by: Kato Tsuguru <tkato@prontomail.ne.jp> Notes: svn path=/head/; revision=33590
* Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} isSatoshi Asami2000-10-081-1/+1
| | | | | | | | | spelled out (many of which are ${PKGDIR}/MESSAGE -> ${PKGMESSAGE} type fixes that shouldn't have been necessary) and the string "/pkg/" appear. Notes: svn path=/head/; revision=33576
* Rename ${FILESDIR}/patch-* to ${PATCHDIR}/extra-patch-*.Satoshi Asami2000-10-071-2/+2
| | | | | | | | (This should probably be rewritten to use EXTRA_PATCHES but I don't have time to test it now.) Notes: svn path=/head/; revision=33475
* Implement USE_GTK, part 1.Jeremy Lea2000-10-053-38/+26
| | | | Notes: svn path=/head/; revision=33424
* - Support CC/CFLAGS/PREFIX properlyJames E. Housley2000-10-036-8/+127
| | | | | | | | | | | | | | | - gets() -> fgets() - Add WWW: line into pkg/DESCR Also bumped PORTREVISION to 1 PR: 21572 Submitted by: tkato@prontomail.ne.jp <KATO@FreeBSD.ORG, Tsuguru@FreeBSD.ORG> Reviewed by: will Approved by: MAINTAINER (dbader@eece.unm.edu) Notes: svn path=/head/; revision=33343
* Correct and sort PLISTs.Jeremy Lea2000-10-022-6/+6
| | | | Notes: svn path=/head/; revision=33336
* Change MAINTAINER for my ports.Trevor Johnson2000-10-021-1/+1
| | | | | | | Approved by: will Notes: svn path=/head/; revision=33312
* Add USE_XLIBKris Kennaway2000-09-221-0/+1
| | | | Notes: svn path=/head/; revision=32989
* respect CXX and CXXFLAGS (Kato Tsuguru)Ade Lovett2000-09-184-20/+39
| | | | | | | | | | | | | install data files (Kato Tsuguru) bump version (myself) use USE_NEWGCC (Will Andrews) make whitespace changes to Makefile PR: 21359 Submitted by: maintainer Notes: svn path=/head/; revision=32828
* Update to 0.90.d03Neil Blakey-Milner2000-09-113-132/+152
| | | | | | | | PR: 21202 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=32519
* Fix checksumKevin Lo2000-09-091-18/+1
| | | | | | | | PR: 21115 Submitted by: Andreas Schulz <ats@first.gmd.de> Notes: svn path=/head/; revision=32455
* Don't break package building on Satoshi's cluster. Explicitly dependThomas Gellekum2000-09-081-1/+1
| | | | | | | on python1.5:lang/python15. Notes: svn path=/head/; revision=32438
* Upgrade to 1.5.0Neil Blakey-Milner2000-09-084-66/+113
| | | | | | | | PR: 21108 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=32420
* Update to emboss 1.4.0.Neil Blakey-Milner2000-09-074-52/+83
| | | | | | | | PR: ports/20898 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=32388
* Update to version 2000.08.24Kevin Lo2000-09-044-7/+23
| | | | | | | | PR: 20897 Submitted by: MAINTAINER Notes: svn path=/head/; revision=32236
* USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.Maxim Sobolev2000-08-211-1/+0
| | | | Notes: svn path=/head/; revision=31811
* Update to emboss 1.1.0, fixing some style bugs too.Neil Blakey-Milner2000-08-125-6/+321
| | | | | | | | PR: ports/20519 Submitted by: Johann Visagie <johann@egenetics.com> (maintainer) Notes: svn path=/head/; revision=31577
* Upgrade to 0.90.d02.Will Andrews2000-08-052-3/+3
| | | | | | | | PR: 20383 Submitted by: maintainer Notes: svn path=/head/; revision=31328
* Fix MASTER_SITESChris D. Faulhaber2000-08-011-1/+1
| | | | | | | | PR: 20120 Submitted by: Maintainer Notes: svn path=/head/; revision=31219
* Add emboss, the European Molecular Biology Open Software SuiteNeil Blakey-Milner2000-07-316-0/+700
| | | | | | | | PR: ports/20317 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31178
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